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comparison small_rna_maps.xml @ 3:ed8b0142538d draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/small_rna_maps commit 7b2ceb05489c27ddb769c38fdec56274108a6fa1
author artbio
date Tue, 22 Aug 2017 12:05:47 -0400
parents 507383cce5a8
children a6b9a081064b
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2:507383cce5a8 3:ed8b0142538d
1 <tool id="small_rna_maps" name="small_rna_maps" version="1.0.0"> 1 <tool id="small_rna_maps" name="small_rna_maps" version="1.0.1">
2 <description></description> 2 <description></description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.11.2=py27_0">numpy</requirement> 4 <requirement type="package" version="1.11.2=py27_0">numpy</requirement>
5 <requirement type="package" version="0.11.2.1=py27_0">pysam</requirement> 5 <requirement type="package" version="0.11.2.1=py27_0">pysam</requirement>
6 <requirement type="package" version="1.3.2=r3.3.1_0">r-optparse</requirement> 6 <requirement type="package" version="1.3.2=r3.3.1_0">r-optparse</requirement>
21 #end for 21 #end for
22 --sample_names 22 --sample_names
23 #for $sample in $inputs 23 #for $sample in $inputs
24 '$sample.name' 24 '$sample.name'
25 #end for 25 #end for
26 --plot_methods Counts $extra_plot 26 --plot_methods Counts '$extra_plot'
27 --outputs $output_tab $extra_output_tab && 27 --outputs '$output_tab' '$extra_output_tab' &&
28 Rscript '$__tool_directory__'/small_rna_maps.r 28 Rscript '$__tool_directory__'/small_rna_maps.r
29 --first_dataframe '$output_tab' 29 --first_dataframe '$output_tab'
30 --extra_dataframe '$extra_output_tab' 30 --extra_dataframe '$extra_output_tab'
31 --extra_plot_method '$extra_plot' 31 --extra_plot_method '$extra_plot'
32 --output_pdf '$output_pdf' 32 --output_pdf '$output_pdf'