comparison small_rna_maps.py @ 27:fe1a9cfaf5c3 draft

planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/small_rna_maps commit d234ef45deb84f70c85b3372b8e0137df0be4e29

26:376fae7c9f32

def main(inputs, samples, methods, outputs, minsize, maxsize, cluster,
         nostrand, bedfile=None, bed_skipsize=0):
    for method, output in zip(methods, outputs):
        out = open(output, 'w')
        if method == 'Size':
            header = ["Dataset", "Chromosome", "Polarity", method, "Counts",
                      "Strandness", "z-score"]
        elif cluster:
            header = ["Dataset", "Chromosome", "Chrom_length", "Coordinate",
                      "Polarity", method, "Start-End", "Cluster Size",
                      "density"]
        else:
            header = ["Dataset", "Chromosome", "Chrom_length", "Coordinate",
                      "Polarity", method]
        out.write('\t'.join(header) + '\n')
        for input, sample in zip(inputs, samples):
            mapobj = Map(input, sample, minsize, maxsize, cluster, nostrand)
            token = {"Counts": mapobj.compute_readcount,

27:fe1a9cfaf5c3

def main(inputs, samples, methods, outputs, minsize, maxsize, cluster,
         nostrand, bedfile=None, bed_skipsize=0):
    for method, output in zip(methods, outputs):
        out = open(output, 'w')
        if method == 'Size':
            header = ["# Dataset", "Chromosome", "Polarity", method, "Counts",
                      "Strandness", "z-score"]
        elif cluster:
            header = ["# Dataset", "Chromosome", "Chrom_length", "Coordinate",
                      "Polarity", method, "Start-End", "Cluster Size",
                      "density"]
        else:
            header = ["# Dataset", "Chromosome", "Chrom_length", "Coordinate",
                      "Polarity", method]
        out.write('\t'.join(header) + '\n')
        for input, sample in zip(inputs, samples):
            mapobj = Map(input, sample, minsize, maxsize, cluster, nostrand)
            token = {"Counts": mapobj.compute_readcount,