Mercurial > repos > artbio > small_rna_maps
diff small_rna_maps.xml @ 11:a561a71bd7d7 draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/small_rna_maps commit c24bbb6d53574eb1c1eb8d219cf2a39a9ed5b3ff
author | artbio |
---|---|
date | Tue, 06 Mar 2018 06:11:55 -0500 |
parents | c3fb2a864526 |
children | d33263e6e812 |
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--- a/small_rna_maps.xml Tue Nov 07 17:38:39 2017 -0500 +++ b/small_rna_maps.xml Tue Mar 06 06:11:55 2018 -0500 @@ -1,4 +1,4 @@ -<tool id="small_rna_maps" name="small_rna_maps" version="2.4.1"> +<tool id="small_rna_maps" name="small_rna_maps" version="2.4.3"> <description></description> <requirements> <requirement type="package" version="1.11.2=py27_0">numpy</requirement> @@ -267,6 +267,43 @@ <output file="size-count_normed.pdf" name="output_pdf" /> </test> <test> + <param name="inputs" value="input_single_chr.bam" ftype="bam"/> + <param name="minsize" value="0" /> + <param name="maxsize" value="10000" /> + <param name="cluster" value="0" /> + <param name="plots_options_selector" value="two_plot" /> + <param name="first_plot" value="Counts" /> + <param name="extra_plot" value="Coverage" /> + <param name="normalization" value="1 1" /> + <output file="count_1_chr.tab" name="output_tab" /> + <output file="coverage_1_chr.tab" name="extra_output_tab" /> + <output file="counts_coverage_1.pdf" name="output_pdf" /> + </test> + <test> + <param name="inputs" value="input_5_chr.bam" ftype="bam"/> + <param name="minsize" value="0" /> + <param name="maxsize" value="10000" /> + <param name="cluster" value="0" /> + <param name="plots_options_selector" value="two_plot" /> + <param name="first_plot" value="Counts" /> + <param name="extra_plot" value="Coverage" /> + <param name="normalization" value="1 1" /> + <output file="count_5_chr.tab" name="output_tab" /> + <output file="coverage_5_chr.tab" name="extra_output_tab" /> + <output file="counts_coverage_5.pdf" name="output_pdf" /> + </test> + <test> + <param name="inputs" value="input_single_chr.bam" ftype="bam"/> + <param name="minsize" value="0" /> + <param name="maxsize" value="10000" /> + <param name="cluster" value="0" /> + <param name="plots_options_selector" value="one_plot" /> + <param name="first_plot" value="Counts" /> + <param name="normalization" value="1 1" /> + <output file="count_1_chr.tab" name="output_tab" /> + <output file="count_1.pdf" name="output_pdf" /> + </test> + <test> <param name="inputs" value="input1.bam,input2.bam" ftype="bam"/> <param name="minsize" value="0" /> <param name="cluster" value="0" />