# HG changeset patch
# User artbio
# Date 1510094319 18000
# Node ID c3fb2a86452684a032bde1b53be4d4c1615323a5
# Parent  3ea75c5734292b983c9fe7f53d7f70941d341802
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/small_rna_maps commit 6eb3992d56ee12b901b278f2a07bed719c5d0675

diff -r 3ea75c573429 -r c3fb2a864526 small_rna_maps.xml
--- a/small_rna_maps.xml	Tue Nov 07 12:31:28 2017 -0500
+++ b/small_rna_maps.xml	Tue Nov 07 17:38:39 2017 -0500
@@ -1,4 +1,4 @@
-<tool id="small_rna_maps" name="small_rna_maps" version="2.4.0">
+<tool id="small_rna_maps" name="small_rna_maps" version="2.4.1">
   <description></description>
   <requirements>
         <requirement type="package" version="1.11.2=py27_0">numpy</requirement>
diff -r 3ea75c573429 -r c3fb2a864526 test-data/count_cluster_5.pdf
Binary file test-data/count_cluster_5.pdf has changed
diff -r 3ea75c573429 -r c3fb2a864526 test-data/count_cluster_5.tab
--- a/test-data/count_cluster_5.tab	Tue Nov 07 12:31:28 2017 -0500
+++ b/test-data/count_cluster_5.tab	Tue Nov 07 17:38:39 2017 -0500
@@ -1,4 +1,135 @@
 Dataset	Chromosome	Chrom_length	Coordinate	Polarity	Counts
+input1.bam	FBtr0070001	72	1	F	1
+input1.bam	FBtr0070001	72	12	F	14
+input1.bam	FBtr0070001	72	30	F	42
+input1.bam	FBtr0070001	72	72	F	0
+input1.bam	FBtr0070533	72	1	F	1
+input1.bam	FBtr0070533	72	25	F	23
+input1.bam	FBtr0070533	72	72	F	0
+input1.bam	FBtr0070603	72	1	F	0
+input1.bam	FBtr0070603	72	21	F	68
+input1.bam	FBtr0070603	72	53	F	2
+input1.bam	FBtr0070603	72	72	F	0
+input1.bam	FBtr0070604	72	1	F	1
+input1.bam	FBtr0070604	72	20	F	2
+input1.bam	FBtr0070604	72	31	F	36
+input1.bam	FBtr0070604	72	57	F	1
+input1.bam	FBtr0070604	72	72	F	0
+input1.bam	FBtr0070911	73	1	F	0
+input1.bam	FBtr0070911	73	15	F	1
+input1.bam	FBtr0070911	73	38	F	1
+input1.bam	FBtr0070911	73	73	F	0
+input1.bam	FBtr0078490	72	1	F	0
+input1.bam	FBtr0078490	72	15	F	4
+input1.bam	FBtr0078490	72	26	F	3
+input1.bam	FBtr0078490	72	38	F	1
+input1.bam	FBtr0078490	72	72	F	0
+input1.bam	FBtr0078580	72	1	F	0
+input1.bam	FBtr0078580	72	16	F	1102
+input1.bam	FBtr0078580	72	52	F	2
+input1.bam	FBtr0078580	72	72	F	0
+input1.bam	FBtr0078790	73	1	F	1
+input1.bam	FBtr0078790	73	17	F	2
+input1.bam	FBtr0078790	73	33	F	1
+input1.bam	FBtr0078790	73	47	F	9
+input1.bam	FBtr0078790	73	69	R	1
+input1.bam	FBtr0078790	73	73	F	0
+input1.bam	FBtr0079064	72	1	F	0
+input1.bam	FBtr0079064	72	2	F	2
+input1.bam	FBtr0079064	72	33	F	1
+input1.bam	FBtr0079064	72	52	F	1
+input1.bam	FBtr0079064	72	72	F	0
+input1.bam	FBtr0079090	72	1	F	2
+input1.bam	FBtr0079090	72	26	F	1
+input1.bam	FBtr0079090	72	33	F	1
+input1.bam	FBtr0079090	72	53	F	1
+input1.bam	FBtr0079090	72	56	R	1
+input1.bam	FBtr0079090	72	72	F	0
+input1.bam	FBtr0079338	73	1	F	0
+input1.bam	FBtr0079338	73	14	F	5
+input1.bam	FBtr0079338	73	25	F	1
+input1.bam	FBtr0079338	73	44	F	10
+input1.bam	FBtr0079338	73	73	F	0
+input1.bam	FBtr0079528	71	1	F	0
+input1.bam	FBtr0079528	71	9	F	97
+input1.bam	FBtr0079528	71	28	F	1
+input1.bam	FBtr0079528	71	36	F	3
+input1.bam	FBtr0079528	71	51	F	5
+input1.bam	FBtr0079528	71	71	F	0
+input1.bam	FBtr0079596	73	1	F	0
+input1.bam	FBtr0079596	73	10	F	148
+input1.bam	FBtr0079596	73	53	F	4
+input1.bam	FBtr0079596	73	73	F	0
+input1.bam	FBtr0079677	72	1	F	0
+input1.bam	FBtr0079677	72	3	F	2
+input1.bam	FBtr0079677	72	52	F	2
+input1.bam	FBtr0079677	72	72	F	0
+input1.bam	FBtr0079690	72	1	F	1
+input1.bam	FBtr0079690	72	24	F	2
+input1.bam	FBtr0079690	72	33	F	2
+input1.bam	FBtr0079690	72	72	F	0
+input1.bam	FBtr0079692	73	1	F	3
+input1.bam	FBtr0079692	73	18	F	1
+input1.bam	FBtr0079692	73	25	F	1
+input1.bam	FBtr0079692	73	32	F	1
+input1.bam	FBtr0079692	73	73	F	0
+input1.bam	FBtr0079693	72	1	F	5
+input1.bam	FBtr0079693	72	25	F	1
+input1.bam	FBtr0079693	72	72	F	0
+input1.bam	FBtr0079694	72	1	F	5
+input1.bam	FBtr0079694	72	18	F	1
+input1.bam	FBtr0079694	72	52	F	1
+input1.bam	FBtr0079694	72	72	F	0
+input1.bam	FBtr0079702	72	1	F	1
+input1.bam	FBtr0079702	72	19	F	2
+input1.bam	FBtr0079702	72	56	F	1
+input1.bam	FBtr0079702	72	72	F	0
+input1.bam	FBtr0079728	72	1	F	2
+input1.bam	FBtr0079728	72	8	F	1
+input1.bam	FBtr0079728	72	19	F	1
+input1.bam	FBtr0079728	72	33	F	3
+input1.bam	FBtr0079728	72	56	F	1
+input1.bam	FBtr0079728	72	72	F	0
+input1.bam	FBtr0079729	72	1	F	1
+input1.bam	FBtr0079729	72	13	F	1
+input1.bam	FBtr0079729	72	54	F	2
+input1.bam	FBtr0079729	72	72	F	0
+input1.bam	FBtr0079752	72	1	F	2
+input1.bam	FBtr0079752	72	9	F	2
+input1.bam	FBtr0079752	72	33	F	2
+input1.bam	FBtr0079752	72	52	F	2
+input1.bam	FBtr0079752	72	72	F	0
+input1.bam	FBtr0079820	74	1	F	0
+input1.bam	FBtr0079820	74	50	F	13
+input1.bam	FBtr0079820	74	74	F	0
+input1.bam	FBtr0080609	72	1	F	0
+input1.bam	FBtr0080609	72	10	F	60
+input1.bam	FBtr0080609	72	42	F	1
+input1.bam	FBtr0080609	72	51	F	2
+input1.bam	FBtr0080609	72	72	F	0
+input1.bam	FBtr0080644	72	1	F	0
+input1.bam	FBtr0080644	72	6	F	6
+input1.bam	FBtr0080644	72	72	F	0
+input1.bam	FBtr0080646	72	1	F	0
+input1.bam	FBtr0080646	72	4	F	3
+input1.bam	FBtr0080646	72	72	F	0
+input1.bam	FBtr0080647	72	1	F	0
+input1.bam	FBtr0080647	72	6	F	10
+input1.bam	FBtr0080647	72	72	F	0
+input1.bam	FBtr0080660	72	1	F	0
+input1.bam	FBtr0080660	72	4	F	7
+input1.bam	FBtr0080660	72	72	F	0
+input1.bam	FBtr0080663	71	1	F	0
+input1.bam	FBtr0080663	71	9	F	102
+input1.bam	FBtr0080663	71	26	F	1
+input1.bam	FBtr0080663	71	32	F	2
+input1.bam	FBtr0080663	71	50	F	10
+input1.bam	FBtr0080663	71	71	F	0
+input1.bam	FBtr0080664	71	1	F	0
+input1.bam	FBtr0080664	71	11	F	108
+input1.bam	FBtr0080664	71	33	F	9
+input1.bam	FBtr0080664	71	53	F	11
+input1.bam	FBtr0080664	71	71	F	0
 input2.bam	FBtr0070001	72	1	F	1
 input2.bam	FBtr0070001	72	15	F	4
 input2.bam	FBtr0070001	72	30	F	4
@@ -132,134 +263,3 @@
 input2.bam	FBtr0080664	71	62	R	1
 input2.bam	FBtr0080664	71	71	F	0
 input2.bam	FBtr0080664	71	71	R	1
-input1.bam	FBtr0070001	72	1	F	1
-input1.bam	FBtr0070001	72	12	F	14
-input1.bam	FBtr0070001	72	30	F	42
-input1.bam	FBtr0070001	72	72	F	0
-input1.bam	FBtr0070533	72	1	F	1
-input1.bam	FBtr0070533	72	25	F	23
-input1.bam	FBtr0070533	72	72	F	0
-input1.bam	FBtr0070603	72	1	F	0
-input1.bam	FBtr0070603	72	21	F	68
-input1.bam	FBtr0070603	72	53	F	2
-input1.bam	FBtr0070603	72	72	F	0
-input1.bam	FBtr0070604	72	1	F	1
-input1.bam	FBtr0070604	72	20	F	2
-input1.bam	FBtr0070604	72	31	F	36
-input1.bam	FBtr0070604	72	57	F	1
-input1.bam	FBtr0070604	72	72	F	0
-input1.bam	FBtr0070911	73	1	F	0
-input1.bam	FBtr0070911	73	15	F	1
-input1.bam	FBtr0070911	73	38	F	1
-input1.bam	FBtr0070911	73	73	F	0
-input1.bam	FBtr0078490	72	1	F	0
-input1.bam	FBtr0078490	72	15	F	4
-input1.bam	FBtr0078490	72	26	F	3
-input1.bam	FBtr0078490	72	38	F	1
-input1.bam	FBtr0078490	72	72	F	0
-input1.bam	FBtr0078580	72	1	F	0
-input1.bam	FBtr0078580	72	16	F	1102
-input1.bam	FBtr0078580	72	52	F	2
-input1.bam	FBtr0078580	72	72	F	0
-input1.bam	FBtr0078790	73	1	F	1
-input1.bam	FBtr0078790	73	17	F	2
-input1.bam	FBtr0078790	73	33	F	1
-input1.bam	FBtr0078790	73	47	F	9
-input1.bam	FBtr0078790	73	69	R	1
-input1.bam	FBtr0078790	73	73	F	0
-input1.bam	FBtr0079064	72	1	F	0
-input1.bam	FBtr0079064	72	2	F	2
-input1.bam	FBtr0079064	72	33	F	1
-input1.bam	FBtr0079064	72	52	F	1
-input1.bam	FBtr0079064	72	72	F	0
-input1.bam	FBtr0079090	72	1	F	2
-input1.bam	FBtr0079090	72	26	F	1
-input1.bam	FBtr0079090	72	33	F	1
-input1.bam	FBtr0079090	72	53	F	1
-input1.bam	FBtr0079090	72	56	R	1
-input1.bam	FBtr0079090	72	72	F	0
-input1.bam	FBtr0079338	73	1	F	0
-input1.bam	FBtr0079338	73	14	F	5
-input1.bam	FBtr0079338	73	25	F	1
-input1.bam	FBtr0079338	73	44	F	10
-input1.bam	FBtr0079338	73	73	F	0
-input1.bam	FBtr0079528	71	1	F	0
-input1.bam	FBtr0079528	71	9	F	97
-input1.bam	FBtr0079528	71	28	F	1
-input1.bam	FBtr0079528	71	36	F	3
-input1.bam	FBtr0079528	71	51	F	5
-input1.bam	FBtr0079528	71	71	F	0
-input1.bam	FBtr0079596	73	1	F	0
-input1.bam	FBtr0079596	73	10	F	148
-input1.bam	FBtr0079596	73	53	F	4
-input1.bam	FBtr0079596	73	73	F	0
-input1.bam	FBtr0079677	72	1	F	0
-input1.bam	FBtr0079677	72	3	F	2
-input1.bam	FBtr0079677	72	52	F	2
-input1.bam	FBtr0079677	72	72	F	0
-input1.bam	FBtr0079690	72	1	F	1
-input1.bam	FBtr0079690	72	24	F	2
-input1.bam	FBtr0079690	72	33	F	2
-input1.bam	FBtr0079690	72	72	F	0
-input1.bam	FBtr0079692	73	1	F	3
-input1.bam	FBtr0079692	73	18	F	1
-input1.bam	FBtr0079692	73	25	F	1
-input1.bam	FBtr0079692	73	32	F	1
-input1.bam	FBtr0079692	73	73	F	0
-input1.bam	FBtr0079693	72	1	F	5
-input1.bam	FBtr0079693	72	25	F	1
-input1.bam	FBtr0079693	72	72	F	0
-input1.bam	FBtr0079694	72	1	F	5
-input1.bam	FBtr0079694	72	18	F	1
-input1.bam	FBtr0079694	72	52	F	1
-input1.bam	FBtr0079694	72	72	F	0
-input1.bam	FBtr0079702	72	1	F	1
-input1.bam	FBtr0079702	72	19	F	2
-input1.bam	FBtr0079702	72	56	F	1
-input1.bam	FBtr0079702	72	72	F	0
-input1.bam	FBtr0079728	72	1	F	2
-input1.bam	FBtr0079728	72	8	F	1
-input1.bam	FBtr0079728	72	19	F	1
-input1.bam	FBtr0079728	72	33	F	3
-input1.bam	FBtr0079728	72	56	F	1
-input1.bam	FBtr0079728	72	72	F	0
-input1.bam	FBtr0079729	72	1	F	1
-input1.bam	FBtr0079729	72	13	F	1
-input1.bam	FBtr0079729	72	54	F	2
-input1.bam	FBtr0079729	72	72	F	0
-input1.bam	FBtr0079752	72	1	F	2
-input1.bam	FBtr0079752	72	9	F	2
-input1.bam	FBtr0079752	72	33	F	2
-input1.bam	FBtr0079752	72	52	F	2
-input1.bam	FBtr0079752	72	72	F	0
-input1.bam	FBtr0079820	74	1	F	0
-input1.bam	FBtr0079820	74	50	F	13
-input1.bam	FBtr0079820	74	74	F	0
-input1.bam	FBtr0080609	72	1	F	0
-input1.bam	FBtr0080609	72	10	F	60
-input1.bam	FBtr0080609	72	42	F	1
-input1.bam	FBtr0080609	72	51	F	2
-input1.bam	FBtr0080609	72	72	F	0
-input1.bam	FBtr0080644	72	1	F	0
-input1.bam	FBtr0080644	72	6	F	6
-input1.bam	FBtr0080644	72	72	F	0
-input1.bam	FBtr0080646	72	1	F	0
-input1.bam	FBtr0080646	72	4	F	3
-input1.bam	FBtr0080646	72	72	F	0
-input1.bam	FBtr0080647	72	1	F	0
-input1.bam	FBtr0080647	72	6	F	10
-input1.bam	FBtr0080647	72	72	F	0
-input1.bam	FBtr0080660	72	1	F	0
-input1.bam	FBtr0080660	72	4	F	7
-input1.bam	FBtr0080660	72	72	F	0
-input1.bam	FBtr0080663	71	1	F	0
-input1.bam	FBtr0080663	71	9	F	102
-input1.bam	FBtr0080663	71	26	F	1
-input1.bam	FBtr0080663	71	32	F	2
-input1.bam	FBtr0080663	71	50	F	10
-input1.bam	FBtr0080663	71	71	F	0
-input1.bam	FBtr0080664	71	1	F	0
-input1.bam	FBtr0080664	71	11	F	108
-input1.bam	FBtr0080664	71	33	F	9
-input1.bam	FBtr0080664	71	53	F	11
-input1.bam	FBtr0080664	71	71	F	0