Mercurial > repos > artbio > small_rna_maps
changeset 26:376fae7c9f32 draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/small_rna_maps commit 32eba59fa52705ae74fd9fe65f6f55be783bfc74
| author | artbio |
|---|---|
| date | Sun, 14 Apr 2019 14:43:44 -0400 |
| parents | 07aa8f928d4b |
| children | fe1a9cfaf5c3 |
| files | small_rna_maps.py small_rna_maps.xml test-data/bed1.bed test-data/bed2.bed test-data/bed3.bed test-data/bed4.bed test-data/bed5.bed test-data/clustering.pdf test-data/clustering.tab test-data/clustering_unstranded.pdf test-data/clustering_unstranded.tab test-data/global_merge.pdf test-data/global_merge.tab test-data/global_nomerge.pdf test-data/global_nomerge.tab test-data/input1__single_plot_mean.pdf test-data/input1_cluster5_counts.tab test-data/input1_counts.tab test-data/input1_counts_yminneg5_5.tab test-data/input1_coverage.tab test-data/input1_input2_counts.tab test-data/input1_input2_coverage.tab test-data/input1_input2_double_plot_counts_size_ylimneg5_5.pdf test-data/input1_input2_double_plot_coverage_mean_ylim20_25.pdf test-data/input1_input2_mean.tab test-data/input1_input2_norm_1_2_counts.tab test-data/input1_input2_norm_1_2_coverage.tab test-data/input1_input2_norm_1_2_single_plot_counts.pdf test-data/input1_input2_norm_1_2_single_plot_coverage.pdf test-data/input1_input2_size.tab test-data/input1_input2new_norm_1_2_counts.tab test-data/input1_input2new_norm_1_2_single_plot_counts.pdf test-data/input1_mean.tab test-data/input1_median.tab test-data/input1_min0_max10000_cluster0_single_plot_counts.pdf test-data/input1_min0_max10000_cluster0_single_plot_coverage.pdf test-data/input1_min0_max10000_cluster0_single_plot_mean.pdf test-data/input1_min0_max10000_cluster0_single_plot_median.pdf test-data/input1_min0_max10000_cluster0_single_plot_size.pdf test-data/input1_min0_max10000_cluster0_ylimneg5_pos5_single_plot_counts.pdf test-data/input1_min0_max10000_cluster5_single_plot_counts.pdf test-data/input1_min20_max30_cluster0_single_plot_counts.pdf test-data/input1_min20_max30_counts.tab test-data/input1_min20_max30_single_plot_size.pdf test-data/input1_min20_max30_size.tab test-data/input1_single_plot_median.pdf test-data/input1_size.tab test-data/input1_yminneg5_5_single_plot_counts.pdf test-data/input_single_chr_x_6_single_plot_coverage.pdf test-data/input_single_chr_x_6_single_plot_coverage.tab test-data/size.tab |
| diffstat | 51 files changed, 2622 insertions(+), 16625 deletions(-) [+] |
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--- a/small_rna_maps.py Wed Apr 10 06:38:33 2019 -0400 +++ b/small_rna_maps.py Sun Apr 14 14:43:44 2019 -0400 @@ -11,9 +11,9 @@ the_parser.add_argument('--inputs', dest='inputs', required=True, nargs='+', help='list of input BAM files') the_parser.add_argument('--minsize', dest='minsize', type=int, - default=0, help='minimal size of reads') + default=19, help='minimal size of reads') the_parser.add_argument('--maxsize', dest='maxsize', type=int, - default=10000, help='maximal size of reads') + default=29, help='maximal size of reads') the_parser.add_argument('--cluster', dest='cluster', type=int, default=0, help='clustering distance') the_parser.add_argument('--sample_names', dest='sample_names', @@ -63,12 +63,11 @@ self.bam_object = pysam.AlignmentFile(bam_file, 'rb') self.chromosomes = dict(zip(self.bam_object.references, self.bam_object.lengths)) - self.map_dict = self.create_map(self.bam_object, self.minsize, - self.maxsize, self.nostrand) + self.map_dict = self.create_map(self.bam_object, self.nostrand) if self.cluster: self.map_dict = self.tile_map(self.map_dict, self.cluster) - def create_map(self, bam_object, minsize, maxsize, nostrand=False): + def create_map(self, bam_object, nostrand=False): ''' Returns a map_dictionary {(chromosome,read_position,polarity): [read_length, ...]} @@ -294,16 +293,12 @@ out is an *open* file handler ''' for chrom in sorted(sizedic): - sizes = sizedic[chrom]['F'].keys() - sizes.extend(sizedic[chrom]['R'].keys()) + sizes = range(self.minsize, self.maxsize+1) strandness = defaultdict(int) sizeness = defaultdict(int) for polarity in sizedic[chrom]: - for size in range(min(sizes), max(sizes)+1): - try: - strandness[polarity] += sizedic[chrom][polarity][size] - except KeyError: - pass + for size in sizes: + strandness[polarity] += sizedic[chrom][polarity][size] sizeness[size] += sizedic[chrom][polarity][size] Strandbias = strandness['F'] + strandness['R'] if Strandbias: @@ -318,7 +313,7 @@ else: sizeness[size] = 0 for polarity in sorted(sizedic[chrom]): - for size in range(min(sizes), max(sizes)+1): + for size in sizes: try: line = [self.sample_name, chrom, polarity, size, sizedic[chrom][polarity][size],
--- a/small_rna_maps.xml Wed Apr 10 06:38:33 2019 -0400 +++ b/small_rna_maps.xml Sun Apr 14 14:43:44 2019 -0400 @@ -1,4 +1,4 @@ -<tool id="small_rna_maps" name="small_rna_maps" version="2.13.0"> +<tool id="small_rna_maps" name="small_rna_maps" version="2.13.1"> <description></description> <requirements> <requirement type="package" version="1.11.2=py27_0">numpy</requirement> @@ -81,9 +81,9 @@ <param name="normalization" type="text" label="Enter a size/normalization factor." help="Enter normalisation factors separated by space eg [0.75 1.23 1.1], no normalization if no values" value="1"/> <param name="minsize" type="integer" label="Minimal size of reads for inclusion in analysis" - value="0" help="default value: 0" /> + value="19" help="default value: 19" /> <param name="maxsize" type="integer" label="Maximal size of reads for inclusion in analysis" - value="10000" help="default value: 10000" /> + value="29" help="default value: 29" /> <conditional name="plots_options"> <param name="plots_options_selector" type="select" display="radio" label="Plot Options"> <option value="one_plot">Just one plot per chromosome</option> @@ -164,8 +164,6 @@ <test> <!-- 0 --> <param name="inputs" value="input1.bam,input_new2.bam" ftype="bam" /> <param name="normalization" value="1 2" /> - <param name="minsize" value="0" /> - <param name="maxsize" value="10000" /> <param name="plots_options_selector" value="one_plot" /> <param name="first_plot" value="Counts" /> <output file="input1_input2new_norm_1_2_counts.tab" name="output_tab" /> @@ -174,8 +172,6 @@ <test> <!-- 1 --> <param name="inputs" value="input1.bam" ftype="bam" /> <param name="normalization" value="1.0" /> - <param name="minsize" value="0" /> - <param name="maxsize" value="10000" /> <param name="ylimits" value="yes" /> <param name="ymin" value="-5" /> <param name="ymax" value="5" /> @@ -187,8 +183,6 @@ <test> <!-- 2 --> <param name="inputs" value="input1.bam" ftype="bam" /> <param name="normalization" value="1.0" /> - <param name="minsize" value="0" /> - <param name="maxsize" value="10000" /> <param name="plots_options_selector" value="cluster" /> <param name="first_plot" value="Counts" /> <param name="cluster" value="5" /> @@ -201,8 +195,6 @@ <test> <!-- 3 --> <param name="inputs" value="input1.bam" ftype="bam" /> <param name="normalization" value="1.0" /> - <param name="minsize" value="0" /> - <param name="maxsize" value="10000" /> <param name="plots_options_selector" value="cluster" /> <param name="first_plot" value="Counts" /> <param name="cluster" value="5" /> @@ -215,8 +207,6 @@ <test> <!-- 4 --> <param name="inputs" value="input1.bam" ftype="bam" /> <param name="normalization" value="1.0" /> - <param name="minsize" value="0" /> - <param name="maxsize" value="10000" /> <param name="plots_options_selector" value="cluster" /> <param name="first_plot" value="Counts" /> <param name="cluster" value="5" /> @@ -229,8 +219,6 @@ <test> <!-- 5 --> <param name="inputs" value="input1.bam" ftype="bam" /> <param name="normalization" value="1.0" /> - <param name="minsize" value="0" /> - <param name="maxsize" value="10000" /> <param name="plots_options_selector" value="cluster" /> <param name="first_plot" value="Counts" /> <param name="cluster" value="5" /> @@ -245,8 +233,6 @@ <test> <!-- 6 --> <param name="inputs" value="input1.bam" ftype="bam" /> <param name="normalization" value="1.0" /> - <param name="minsize" value="0" /> - <param name="maxsize" value="10000" /> <param name="plots_options_selector" value="cluster" /> <param name="first_plot" value="Counts" /> <param name="cluster" value="5" /> @@ -261,8 +247,6 @@ <test> <!-- 7 --> <param name="inputs" value="input1.bam" ftype="bam" /> <param name="normalization" value="1.0" /> - <param name="minsize" value="20" /> - <param name="maxsize" value="30" /> <param name="plots_options_selector" value="one_plot" /> <param name="first_plot" value="Size" /> <output file="input1_min20_max30_size.tab" name="output_tab" /> @@ -271,8 +255,6 @@ <test> <!-- 8 --> <param name="inputs" value="input1.bam" ftype="bam" /> <param name="normalization" value="1.0" /> - <param name="minsize" value="0" /> - <param name="maxsize" value="10000" /> <param name="plots_options_selector" value="one_plot" /> <param name="first_plot" value="Mean" /> <output file="input1_mean.tab" name="output_tab" /> @@ -281,8 +263,6 @@ <test> <!-- 9 --> <param name="inputs" value="input1.bam" ftype="bam" /> <param name="normalization" value="1.0" /> - <param name="minsize" value="0" /> - <param name="maxsize" value="10000" /> <param name="plots_options_selector" value="one_plot" /> <param name="first_plot" value="Median" /> <output file="input1_median.tab" name="output_tab" /> @@ -291,8 +271,6 @@ <test> <!-- 10 --> <param name="inputs" value="input1.bam,input2.bam" ftype="bam" /> <param name="normalization" value="1.0 2.0" /> - <param name="minsize" value="0" /> - <param name="maxsize" value="10000" /> <param name="plots_options_selector" value="one_plot" /> <param name="first_plot" value="Counts" /> <output file="input1_input2_norm_1_2_counts.tab" name="output_tab" /> @@ -301,8 +279,6 @@ <test> <!-- 11 --> <param name="inputs" value="input1.bam,input2.bam" ftype="bam" /> <param name="normalization" value="1.0 1.0" /> - <param name="minsize" value="0" /> - <param name="maxsize" value="10000" /> <param name="ylimits" value="yes" /> <param name="ymin" value="-5" /> <param name="ymax" value="5" /> @@ -316,8 +292,6 @@ <test> <!-- 12 --> <param name="inputs" value="input_single_chr.bam,input_single_chr.bam,input_single_chr.bam,input_single_chr.bam,input_single_chr.bam,input_single_chr.bam" ftype="bam" /> <param name="normalization" value="1.0 1.0 1.0 1.0 1.0 1.0" /> - <param name="minsize" value="0" /> - <param name="maxsize" value="10000" /> <param name="plots_options_selector" value="one_plot" /> <param name="first_plot" value="Coverage" /> <output file="input_single_chr_x_6_single_plot_coverage.tab" name="output_tab" /> @@ -326,8 +300,6 @@ <test> <!-- 13 --> <param name="inputs" value="input1.bam,input2.bam" ftype="bam" /> <param name="normalization" value="1.0 1.0" /> - <param name="minsize" value="0" /> - <param name="maxsize" value="10000" /> <param name="plots_options_selector" value="global" /> <param name="mergestrands" value="nomerge" /> <param name="first_plot" value="Size" /> @@ -337,8 +309,6 @@ <test> <!-- 14 --> <param name="inputs" value="input1.bam,input2.bam" ftype="bam" /> <param name="normalization" value="1.0 1.0" /> - <param name="minsize" value="0" /> - <param name="maxsize" value="10000" /> <param name="plots_options_selector" value="global" /> <param name="mergestrands" value="merge" /> <param name="first_plot" value="Size" />
--- a/test-data/bed1.bed Wed Apr 10 06:38:33 2019 -0400 +++ b/test-data/bed1.bed Sun Apr 14 14:43:44 2019 -0400 @@ -1,84 +1,55 @@ -FBtr0070001 0 17 cluster_1 1 + 0.0588235294118 -FBtr0070001 6 33 cluster_2 14 + 0.518518518519 -FBtr0070001 26 53 cluster_3 42 + 1.55555555556 -FBtr0070533 0 15 cluster_4 1 + 0.0666666666667 -FBtr0070533 11 55 cluster_5 23 + 0.522727272727 -FBtr0070603 0 62 cluster_6 68 + 1.09677419355 -FBtr0070603 50 71 cluster_7 2 + 0.0952380952381 -FBtr0070604 0 15 cluster_8 1 + 0.0666666666667 -FBtr0070604 17 40 cluster_9 2 + 0.0869565217391 -FBtr0070604 29 53 cluster_10 36 + 1.5 -FBtr0070604 56 71 cluster_11 1 + 0.0666666666667 -FBtr0070911 14 35 cluster_12 1 + 0.047619047619 -FBtr0070911 37 52 cluster_13 1 + 0.0666666666667 -FBtr0078490 12 32 cluster_14 4 + 0.2 -FBtr0078490 24 50 cluster_15 3 + 0.115384615385 -FBtr0078490 37 55 cluster_16 1 + 0.0555555555556 -FBtr0078580 0 47 cluster_17 1102 + 23.4468085106 -FBtr0078580 51 68 cluster_18 2 + 0.117647058824 -FBtr0078790 0 19 cluster_19 1 + 0.0526315789474 -FBtr0078790 16 32 cluster_20 2 + 0.125 -FBtr0078790 32 55 cluster_21 1 + 0.0434782608696 -FBtr0078790 41 71 cluster_22 9 + 0.3 -FBtr0078790 54 69 cluster_23 1 - 0.0666666666667 -FBtr0079064 0 23 cluster_24 2 + 0.0869565217391 -FBtr0079064 32 47 cluster_25 1 + 0.0666666666667 -FBtr0079064 51 68 cluster_26 1 + 0.0588235294118 -FBtr0079090 0 28 cluster_27 2 + 0.0714285714286 -FBtr0079090 25 49 cluster_28 1 + 0.0416666666667 -FBtr0079090 32 48 cluster_29 1 + 0.0625 -FBtr0079090 52 70 cluster_30 1 + 0.0555555555556 -FBtr0079090 35 56 cluster_31 1 - 0.047619047619 -FBtr0079338 11 31 cluster_32 5 + 0.25 -FBtr0079338 24 40 cluster_33 1 + 0.0625 -FBtr0079338 41 63 cluster_34 10 + 0.454545454545 -FBtr0079528 0 38 cluster_35 97 + 2.55263157895 -FBtr0079528 27 43 cluster_36 1 + 0.0625 -FBtr0079528 34 54 cluster_37 3 + 0.15 -FBtr0079528 50 65 cluster_38 5 + 0.333333333333 -FBtr0079596 0 33 cluster_39 148 + 4.48484848485 -FBtr0079596 52 73 cluster_40 4 + 0.190476190476 -FBtr0079677 0 23 cluster_41 2 + 0.0869565217391 -FBtr0079677 51 70 cluster_42 2 + 0.105263157895 -FBtr0079690 0 15 cluster_43 1 + 0.0666666666667 -FBtr0079690 21 51 cluster_44 2 + 0.0666666666667 -FBtr0079690 32 49 cluster_45 2 + 0.117647058824 -FBtr0079692 0 23 cluster_46 3 + 0.130434782609 -FBtr0079692 17 35 cluster_47 1 + 0.0555555555556 -FBtr0079692 24 41 cluster_48 1 + 0.0588235294118 -FBtr0079692 31 51 cluster_49 1 + 0.05 -FBtr0079693 0 24 cluster_50 5 + 0.208333333333 -FBtr0079693 24 47 cluster_51 1 + 0.0434782608696 -FBtr0079694 0 25 cluster_52 5 + 0.2 -FBtr0079694 17 36 cluster_53 1 + 0.0526315789474 -FBtr0079694 51 68 cluster_54 1 + 0.0588235294118 -FBtr0079702 0 15 cluster_55 1 + 0.0666666666667 -FBtr0079702 18 36 cluster_56 2 + 0.111111111111 -FBtr0079702 55 70 cluster_57 1 + 0.0666666666667 -FBtr0079728 0 17 cluster_58 2 + 0.117647058824 -FBtr0079728 7 27 cluster_59 1 + 0.05 -FBtr0079728 18 42 cluster_60 1 + 0.0416666666667 -FBtr0079728 32 49 cluster_61 3 + 0.176470588235 -FBtr0079728 55 70 cluster_62 1 + 0.0666666666667 -FBtr0079729 0 15 cluster_63 1 + 0.0666666666667 -FBtr0079729 12 34 cluster_64 1 + 0.0454545454545 -FBtr0079729 51 72 cluster_65 2 + 0.0952380952381 -FBtr0079752 0 24 cluster_66 2 + 0.0833333333333 -FBtr0079752 6 27 cluster_67 2 + 0.0952380952381 -FBtr0079752 32 49 cluster_68 2 + 0.117647058824 -FBtr0079752 51 71 cluster_69 2 + 0.1 -FBtr0079820 44 74 cluster_70 13 + 0.433333333333 -FBtr0080609 0 44 cluster_71 60 + 1.36363636364 -FBtr0080609 41 62 cluster_72 1 + 0.047619047619 -FBtr0080609 50 66 cluster_73 2 + 0.125 -FBtr0080644 0 27 cluster_74 6 + 0.222222222222 -FBtr0080646 0 27 cluster_75 3 + 0.111111111111 -FBtr0080647 0 27 cluster_76 10 + 0.37037037037 -FBtr0080660 0 27 cluster_77 7 + 0.259259259259 -FBtr0080663 0 34 cluster_78 102 + 3.0 -FBtr0080663 25 43 cluster_79 1 + 0.0555555555556 -FBtr0080663 31 47 cluster_80 2 + 0.125 -FBtr0080663 49 70 cluster_81 10 + 0.47619047619 -FBtr0080664 0 35 cluster_82 108 + 3.08571428571 -FBtr0080664 27 52 cluster_83 9 + 0.36 -FBtr0080664 49 71 cluster_84 11 + 0.5 +FBtr0070001 6 39 cluster_1 12 + 0.363636363636 +FBtr0070001 26 53 cluster_2 42 + 1.55555555556 +FBtr0070533 18 41 cluster_3 7 + 0.304347826087 +FBtr0070533 27 55 cluster_4 7 + 0.25 +FBtr0070603 0 23 cluster_5 2 + 0.0869565217391 +FBtr0070603 11 53 cluster_6 35 + 0.833333333333 +FBtr0070603 41 62 cluster_7 1 + 0.047619047619 +FBtr0070604 17 40 cluster_8 2 + 0.0869565217391 +FBtr0070604 30 53 cluster_9 34 + 1.47826086957 +FBtr0070911 14 35 cluster_10 1 + 0.047619047619 +FBtr0078490 27 50 cluster_11 1 + 0.0434782608696 +FBtr0078580 0 52 cluster_12 452 + 8.69230769231 +FBtr0078790 0 19 cluster_13 1 + 0.0526315789474 +FBtr0078790 32 55 cluster_14 1 + 0.0434782608696 +FBtr0078790 41 63 cluster_15 4 + 0.181818181818 +FBtr0078790 51 71 cluster_16 1 + 0.05 +FBtr0079064 0 23 cluster_17 1 + 0.0434782608696 +FBtr0079090 0 28 cluster_18 1 + 0.0357142857143 +FBtr0079090 25 49 cluster_19 1 + 0.0416666666667 +FBtr0079090 35 56 cluster_20 1 - 0.047619047619 +FBtr0079338 12 31 cluster_21 1 + 0.0526315789474 +FBtr0079338 41 63 cluster_22 9 + 0.409090909091 +FBtr0079528 0 38 cluster_23 77 + 2.02631578947 +FBtr0079528 35 55 cluster_24 1 + 0.05 +FBtr0079596 0 24 cluster_25 50 + 2.08333333333 +FBtr0079596 12 33 cluster_26 1 + 0.047619047619 +FBtr0079596 52 73 cluster_27 3 + 0.142857142857 +FBtr0079677 0 23 cluster_28 2 + 0.0869565217391 +FBtr0079677 51 70 cluster_29 1 + 0.0526315789474 +FBtr0079690 26 51 cluster_30 1 + 0.04 +FBtr0079692 0 23 cluster_31 2 + 0.0869565217391 +FBtr0079692 31 51 cluster_32 1 + 0.05 +FBtr0079693 0 24 cluster_33 1 + 0.0416666666667 +FBtr0079693 24 47 cluster_34 1 + 0.0434782608696 +FBtr0079694 0 25 cluster_35 3 + 0.12 +FBtr0079694 17 36 cluster_36 1 + 0.0526315789474 +FBtr0079728 7 27 cluster_37 1 + 0.05 +FBtr0079728 18 42 cluster_38 1 + 0.0416666666667 +FBtr0079729 12 34 cluster_39 1 + 0.0454545454545 +FBtr0079752 0 24 cluster_40 1 + 0.0416666666667 +FBtr0079752 6 26 cluster_41 1 + 0.05 +FBtr0079752 51 71 cluster_42 2 + 0.1 +FBtr0079820 44 74 cluster_43 6 + 0.2 +FBtr0080609 0 23 cluster_44 17 + 0.739130434783 +FBtr0080609 11 44 cluster_45 6 + 0.181818181818 +FBtr0080609 41 62 cluster_46 1 + 0.047619047619 +FBtr0080644 0 27 cluster_47 2 + 0.0740740740741 +FBtr0080646 0 27 cluster_48 2 + 0.0740740740741 +FBtr0080647 0 27 cluster_49 2 + 0.0740740740741 +FBtr0080660 0 27 cluster_50 6 + 0.222222222222 +FBtr0080663 0 27 cluster_51 69 + 2.55555555556 +FBtr0080663 13 32 cluster_52 2 + 0.105263157895 +FBtr0080663 50 70 cluster_53 1 + 0.05 +FBtr0080664 0 35 cluster_54 78 + 2.22857142857 +FBtr0080664 32 56 cluster_55 2 + 0.0833333333333
--- a/test-data/bed2.bed Wed Apr 10 06:38:33 2019 -0400 +++ b/test-data/bed2.bed Sun Apr 14 14:43:44 2019 -0400 @@ -1,83 +1,55 @@ -FBtr0070001 0 17 cluster_1 1 . 0.0588235294118 -FBtr0070001 6 33 cluster_2 14 . 0.518518518519 -FBtr0070001 26 53 cluster_3 42 . 1.55555555556 -FBtr0070533 0 15 cluster_4 1 . 0.0666666666667 -FBtr0070533 11 55 cluster_5 23 . 0.522727272727 -FBtr0070603 0 62 cluster_6 68 . 1.09677419355 -FBtr0070603 50 71 cluster_7 2 . 0.0952380952381 -FBtr0070604 0 15 cluster_8 1 . 0.0666666666667 -FBtr0070604 17 40 cluster_9 2 . 0.0869565217391 -FBtr0070604 29 53 cluster_10 36 . 1.5 -FBtr0070604 56 71 cluster_11 1 . 0.0666666666667 -FBtr0070911 14 35 cluster_12 1 . 0.047619047619 -FBtr0070911 37 52 cluster_13 1 . 0.0666666666667 -FBtr0078490 12 32 cluster_14 4 . 0.2 -FBtr0078490 24 50 cluster_15 3 . 0.115384615385 -FBtr0078490 37 55 cluster_16 1 . 0.0555555555556 -FBtr0078580 0 47 cluster_17 1102 . 23.4468085106 -FBtr0078580 51 68 cluster_18 2 . 0.117647058824 -FBtr0078790 0 19 cluster_19 1 . 0.0526315789474 -FBtr0078790 16 32 cluster_20 2 . 0.125 -FBtr0078790 32 55 cluster_21 1 . 0.0434782608696 -FBtr0078790 41 71 cluster_22 9 . 0.3 -FBtr0078790 68 73 cluster_23 1 . 0.2 -FBtr0079064 0 23 cluster_24 2 . 0.0869565217391 -FBtr0079064 32 47 cluster_25 1 . 0.0666666666667 -FBtr0079064 51 68 cluster_26 1 . 0.0588235294118 -FBtr0079090 0 28 cluster_27 2 . 0.0714285714286 -FBtr0079090 25 49 cluster_28 1 . 0.0416666666667 -FBtr0079090 32 48 cluster_29 1 . 0.0625 -FBtr0079090 52 76 cluster_30 2 . 0.0833333333333 -FBtr0079338 11 31 cluster_31 5 . 0.25 -FBtr0079338 24 40 cluster_32 1 . 0.0625 -FBtr0079338 41 63 cluster_33 10 . 0.454545454545 -FBtr0079528 0 38 cluster_34 97 . 2.55263157895 -FBtr0079528 27 43 cluster_35 1 . 0.0625 -FBtr0079528 34 54 cluster_36 3 . 0.15 -FBtr0079528 50 65 cluster_37 5 . 0.333333333333 -FBtr0079596 0 33 cluster_38 148 . 4.48484848485 -FBtr0079596 52 73 cluster_39 4 . 0.190476190476 -FBtr0079677 0 23 cluster_40 2 . 0.0869565217391 -FBtr0079677 51 70 cluster_41 2 . 0.105263157895 -FBtr0079690 0 15 cluster_42 1 . 0.0666666666667 -FBtr0079690 21 51 cluster_43 2 . 0.0666666666667 -FBtr0079690 32 49 cluster_44 2 . 0.117647058824 -FBtr0079692 0 23 cluster_45 3 . 0.130434782609 -FBtr0079692 17 35 cluster_46 1 . 0.0555555555556 -FBtr0079692 24 41 cluster_47 1 . 0.0588235294118 -FBtr0079692 31 51 cluster_48 1 . 0.05 -FBtr0079693 0 24 cluster_49 5 . 0.208333333333 -FBtr0079693 24 47 cluster_50 1 . 0.0434782608696 -FBtr0079694 0 25 cluster_51 5 . 0.2 -FBtr0079694 17 36 cluster_52 1 . 0.0526315789474 -FBtr0079694 51 68 cluster_53 1 . 0.0588235294118 -FBtr0079702 0 15 cluster_54 1 . 0.0666666666667 -FBtr0079702 18 36 cluster_55 2 . 0.111111111111 -FBtr0079702 55 70 cluster_56 1 . 0.0666666666667 -FBtr0079728 0 17 cluster_57 2 . 0.117647058824 -FBtr0079728 7 27 cluster_58 1 . 0.05 -FBtr0079728 18 42 cluster_59 1 . 0.0416666666667 -FBtr0079728 32 49 cluster_60 3 . 0.176470588235 -FBtr0079728 55 70 cluster_61 1 . 0.0666666666667 -FBtr0079729 0 15 cluster_62 1 . 0.0666666666667 -FBtr0079729 12 34 cluster_63 1 . 0.0454545454545 -FBtr0079729 51 72 cluster_64 2 . 0.0952380952381 -FBtr0079752 0 24 cluster_65 2 . 0.0833333333333 -FBtr0079752 6 27 cluster_66 2 . 0.0952380952381 -FBtr0079752 32 49 cluster_67 2 . 0.117647058824 -FBtr0079752 51 71 cluster_68 2 . 0.1 -FBtr0079820 44 74 cluster_69 13 . 0.433333333333 -FBtr0080609 0 44 cluster_70 60 . 1.36363636364 -FBtr0080609 41 62 cluster_71 1 . 0.047619047619 -FBtr0080609 50 66 cluster_72 2 . 0.125 -FBtr0080644 0 27 cluster_73 6 . 0.222222222222 -FBtr0080646 0 27 cluster_74 3 . 0.111111111111 -FBtr0080647 0 27 cluster_75 10 . 0.37037037037 -FBtr0080660 0 27 cluster_76 7 . 0.259259259259 -FBtr0080663 0 34 cluster_77 102 . 3.0 -FBtr0080663 25 43 cluster_78 1 . 0.0555555555556 -FBtr0080663 31 47 cluster_79 2 . 0.125 -FBtr0080663 49 70 cluster_80 10 . 0.47619047619 -FBtr0080664 0 35 cluster_81 108 . 3.08571428571 -FBtr0080664 27 52 cluster_82 9 . 0.36 -FBtr0080664 49 71 cluster_83 11 . 0.5 +FBtr0070001 6 39 cluster_1 12 . 0.363636363636 +FBtr0070001 26 53 cluster_2 42 . 1.55555555556 +FBtr0070533 18 41 cluster_3 7 . 0.304347826087 +FBtr0070533 27 55 cluster_4 7 . 0.25 +FBtr0070603 0 23 cluster_5 2 . 0.0869565217391 +FBtr0070603 11 53 cluster_6 35 . 0.833333333333 +FBtr0070603 41 62 cluster_7 1 . 0.047619047619 +FBtr0070604 17 40 cluster_8 2 . 0.0869565217391 +FBtr0070604 30 53 cluster_9 34 . 1.47826086957 +FBtr0070911 14 35 cluster_10 1 . 0.047619047619 +FBtr0078490 27 50 cluster_11 1 . 0.0434782608696 +FBtr0078580 0 52 cluster_12 452 . 8.69230769231 +FBtr0078790 0 19 cluster_13 1 . 0.0526315789474 +FBtr0078790 32 55 cluster_14 1 . 0.0434782608696 +FBtr0078790 41 63 cluster_15 4 . 0.181818181818 +FBtr0078790 51 71 cluster_16 1 . 0.05 +FBtr0079064 0 23 cluster_17 1 . 0.0434782608696 +FBtr0079090 0 28 cluster_18 1 . 0.0357142857143 +FBtr0079090 25 49 cluster_19 1 . 0.0416666666667 +FBtr0079090 55 76 cluster_20 1 . 0.047619047619 +FBtr0079338 12 31 cluster_21 1 . 0.0526315789474 +FBtr0079338 41 63 cluster_22 9 . 0.409090909091 +FBtr0079528 0 38 cluster_23 77 . 2.02631578947 +FBtr0079528 35 55 cluster_24 1 . 0.05 +FBtr0079596 0 24 cluster_25 50 . 2.08333333333 +FBtr0079596 12 33 cluster_26 1 . 0.047619047619 +FBtr0079596 52 73 cluster_27 3 . 0.142857142857 +FBtr0079677 0 23 cluster_28 2 . 0.0869565217391 +FBtr0079677 51 70 cluster_29 1 . 0.0526315789474 +FBtr0079690 26 51 cluster_30 1 . 0.04 +FBtr0079692 0 23 cluster_31 2 . 0.0869565217391 +FBtr0079692 31 51 cluster_32 1 . 0.05 +FBtr0079693 0 24 cluster_33 1 . 0.0416666666667 +FBtr0079693 24 47 cluster_34 1 . 0.0434782608696 +FBtr0079694 0 25 cluster_35 3 . 0.12 +FBtr0079694 17 36 cluster_36 1 . 0.0526315789474 +FBtr0079728 7 27 cluster_37 1 . 0.05 +FBtr0079728 18 42 cluster_38 1 . 0.0416666666667 +FBtr0079729 12 34 cluster_39 1 . 0.0454545454545 +FBtr0079752 0 24 cluster_40 1 . 0.0416666666667 +FBtr0079752 6 26 cluster_41 1 . 0.05 +FBtr0079752 51 71 cluster_42 2 . 0.1 +FBtr0079820 44 74 cluster_43 6 . 0.2 +FBtr0080609 0 23 cluster_44 17 . 0.739130434783 +FBtr0080609 11 44 cluster_45 6 . 0.181818181818 +FBtr0080609 41 62 cluster_46 1 . 0.047619047619 +FBtr0080644 0 27 cluster_47 2 . 0.0740740740741 +FBtr0080646 0 27 cluster_48 2 . 0.0740740740741 +FBtr0080647 0 27 cluster_49 2 . 0.0740740740741 +FBtr0080660 0 27 cluster_50 6 . 0.222222222222 +FBtr0080663 0 27 cluster_51 69 . 2.55555555556 +FBtr0080663 13 32 cluster_52 2 . 0.105263157895 +FBtr0080663 50 70 cluster_53 1 . 0.05 +FBtr0080664 0 35 cluster_54 78 . 2.22857142857 +FBtr0080664 32 56 cluster_55 2 . 0.0833333333333
--- a/test-data/bed3.bed Wed Apr 10 06:38:33 2019 -0400 +++ b/test-data/bed3.bed Sun Apr 14 14:43:44 2019 -0400 @@ -1,84 +1,55 @@ -FBtr0070001 0 17 cluster_1 1 + 0.0588235294118 -FBtr0070001 6 33 cluster_2 14 + 0.518518518519 -FBtr0070001 26 53 cluster_3 42 + 1.55555555556 -FBtr0070533 0 15 cluster_4 1 + 0.0666666666667 -FBtr0070533 11 55 cluster_5 23 + 0.522727272727 -FBtr0070603 0 62 cluster_6 68 + 1.09677419355 -FBtr0070603 50 71 cluster_7 2 + 0.0952380952381 -FBtr0070604 0 15 cluster_8 1 + 0.0666666666667 -FBtr0070604 17 40 cluster_9 2 + 0.0869565217391 -FBtr0070604 29 53 cluster_10 36 + 1.5 -FBtr0070604 56 71 cluster_11 1 + 0.0666666666667 -FBtr0070911 14 35 cluster_12 1 + 0.047619047619 -FBtr0070911 37 52 cluster_13 1 + 0.0666666666667 -FBtr0078490 12 32 cluster_14 4 + 0.2 -FBtr0078490 24 50 cluster_15 3 + 0.115384615385 -FBtr0078490 37 55 cluster_16 1 + 0.0555555555556 -FBtr0078580 0 47 cluster_17 1102 + 23.4468085106 -FBtr0078580 51 68 cluster_18 2 + 0.117647058824 -FBtr0078790 0 19 cluster_19 1 + 0.0526315789474 -FBtr0078790 16 32 cluster_20 2 + 0.125 -FBtr0078790 32 55 cluster_21 1 + 0.0434782608696 -FBtr0078790 41 71 cluster_22 9 + 0.3 -FBtr0078790 54 69 cluster_23 1 - 0.0666666666667 -FBtr0079064 0 23 cluster_24 2 + 0.0869565217391 -FBtr0079064 32 47 cluster_25 1 + 0.0666666666667 -FBtr0079064 51 68 cluster_26 1 + 0.0588235294118 -FBtr0079090 0 28 cluster_27 2 + 0.0714285714286 -FBtr0079090 25 49 cluster_28 1 + 0.0416666666667 -FBtr0079090 32 48 cluster_29 1 + 0.0625 -FBtr0079090 52 70 cluster_30 1 + 0.0555555555556 -FBtr0079090 35 56 cluster_31 1 - 0.047619047619 -FBtr0079338 11 31 cluster_32 5 + 0.25 -FBtr0079338 24 40 cluster_33 1 + 0.0625 -FBtr0079338 41 63 cluster_34 10 + 0.454545454545 -FBtr0079528 0 38 cluster_35 97 + 2.55263157895 -FBtr0079528 27 43 cluster_36 1 + 0.0625 -FBtr0079528 34 54 cluster_37 3 + 0.15 -FBtr0079528 50 65 cluster_38 5 + 0.333333333333 -FBtr0079596 0 33 cluster_39 148 + 4.48484848485 -FBtr0079596 52 73 cluster_40 4 + 0.190476190476 -FBtr0079677 0 23 cluster_41 2 + 0.0869565217391 -FBtr0079677 51 70 cluster_42 2 + 0.105263157895 -FBtr0079690 0 15 cluster_43 1 + 0.0666666666667 -FBtr0079690 21 51 cluster_44 2 + 0.0666666666667 -FBtr0079690 32 49 cluster_45 2 + 0.117647058824 -FBtr0079692 0 23 cluster_46 3 + 0.130434782609 -FBtr0079692 17 35 cluster_47 1 + 0.0555555555556 -FBtr0079692 24 41 cluster_48 1 + 0.0588235294118 -FBtr0079692 31 51 cluster_49 1 + 0.05 -FBtr0079693 0 24 cluster_50 5 + 0.208333333333 -FBtr0079693 24 47 cluster_51 1 + 0.0434782608696 -FBtr0079694 0 25 cluster_52 5 + 0.2 -FBtr0079694 17 36 cluster_53 1 + 0.0526315789474 -FBtr0079694 51 68 cluster_54 1 + 0.0588235294118 -FBtr0079702 0 15 cluster_55 1 + 0.0666666666667 -FBtr0079702 18 36 cluster_56 2 + 0.111111111111 -FBtr0079702 55 70 cluster_57 1 + 0.0666666666667 -FBtr0079728 0 17 cluster_58 2 + 0.117647058824 -FBtr0079728 7 27 cluster_59 1 + 0.05 -FBtr0079728 18 42 cluster_60 1 + 0.0416666666667 -FBtr0079728 32 49 cluster_61 3 + 0.176470588235 -FBtr0079728 55 70 cluster_62 1 + 0.0666666666667 -FBtr0079729 0 15 cluster_63 1 + 0.0666666666667 -FBtr0079729 12 34 cluster_64 1 + 0.0454545454545 -FBtr0079729 51 72 cluster_65 2 + 0.0952380952381 -FBtr0079752 0 24 cluster_66 2 + 0.0833333333333 -FBtr0079752 6 27 cluster_67 2 + 0.0952380952381 -FBtr0079752 32 49 cluster_68 2 + 0.117647058824 -FBtr0079752 51 71 cluster_69 2 + 0.1 -FBtr0079820 44 74 cluster_70 13 + 0.433333333333 -FBtr0080609 0 44 cluster_71 60 + 1.36363636364 -FBtr0080609 41 62 cluster_72 1 + 0.047619047619 -FBtr0080609 50 66 cluster_73 2 + 0.125 -FBtr0080644 0 27 cluster_74 6 + 0.222222222222 -FBtr0080646 0 27 cluster_75 3 + 0.111111111111 -FBtr0080647 0 27 cluster_76 10 + 0.37037037037 -FBtr0080660 0 27 cluster_77 7 + 0.259259259259 -FBtr0080663 0 34 cluster_78 102 + 3.0 -FBtr0080663 25 43 cluster_79 1 + 0.0555555555556 -FBtr0080663 31 47 cluster_80 2 + 0.125 -FBtr0080663 49 70 cluster_81 10 + 0.47619047619 -FBtr0080664 0 35 cluster_82 108 + 3.08571428571 -FBtr0080664 27 52 cluster_83 9 + 0.36 -FBtr0080664 49 71 cluster_84 11 + 0.5 +FBtr0070001 6 39 cluster_1 12 + 0.363636363636 +FBtr0070001 26 53 cluster_2 42 + 1.55555555556 +FBtr0070533 18 41 cluster_3 7 + 0.304347826087 +FBtr0070533 27 55 cluster_4 7 + 0.25 +FBtr0070603 0 23 cluster_5 2 + 0.0869565217391 +FBtr0070603 11 53 cluster_6 35 + 0.833333333333 +FBtr0070603 41 62 cluster_7 1 + 0.047619047619 +FBtr0070604 17 40 cluster_8 2 + 0.0869565217391 +FBtr0070604 30 53 cluster_9 34 + 1.47826086957 +FBtr0070911 14 35 cluster_10 1 + 0.047619047619 +FBtr0078490 27 50 cluster_11 1 + 0.0434782608696 +FBtr0078580 0 52 cluster_12 452 + 8.69230769231 +FBtr0078790 0 19 cluster_13 1 + 0.0526315789474 +FBtr0078790 32 55 cluster_14 1 + 0.0434782608696 +FBtr0078790 41 63 cluster_15 4 + 0.181818181818 +FBtr0078790 51 71 cluster_16 1 + 0.05 +FBtr0079064 0 23 cluster_17 1 + 0.0434782608696 +FBtr0079090 0 28 cluster_18 1 + 0.0357142857143 +FBtr0079090 25 49 cluster_19 1 + 0.0416666666667 +FBtr0079090 35 56 cluster_20 1 - 0.047619047619 +FBtr0079338 12 31 cluster_21 1 + 0.0526315789474 +FBtr0079338 41 63 cluster_22 9 + 0.409090909091 +FBtr0079528 0 38 cluster_23 77 + 2.02631578947 +FBtr0079528 35 55 cluster_24 1 + 0.05 +FBtr0079596 0 24 cluster_25 50 + 2.08333333333 +FBtr0079596 12 33 cluster_26 1 + 0.047619047619 +FBtr0079596 52 73 cluster_27 3 + 0.142857142857 +FBtr0079677 0 23 cluster_28 2 + 0.0869565217391 +FBtr0079677 51 70 cluster_29 1 + 0.0526315789474 +FBtr0079690 26 51 cluster_30 1 + 0.04 +FBtr0079692 0 23 cluster_31 2 + 0.0869565217391 +FBtr0079692 31 51 cluster_32 1 + 0.05 +FBtr0079693 0 24 cluster_33 1 + 0.0416666666667 +FBtr0079693 24 47 cluster_34 1 + 0.0434782608696 +FBtr0079694 0 25 cluster_35 3 + 0.12 +FBtr0079694 17 36 cluster_36 1 + 0.0526315789474 +FBtr0079728 7 27 cluster_37 1 + 0.05 +FBtr0079728 18 42 cluster_38 1 + 0.0416666666667 +FBtr0079729 12 34 cluster_39 1 + 0.0454545454545 +FBtr0079752 0 24 cluster_40 1 + 0.0416666666667 +FBtr0079752 6 26 cluster_41 1 + 0.05 +FBtr0079752 51 71 cluster_42 2 + 0.1 +FBtr0079820 44 74 cluster_43 6 + 0.2 +FBtr0080609 0 23 cluster_44 17 + 0.739130434783 +FBtr0080609 11 44 cluster_45 6 + 0.181818181818 +FBtr0080609 41 62 cluster_46 1 + 0.047619047619 +FBtr0080644 0 27 cluster_47 2 + 0.0740740740741 +FBtr0080646 0 27 cluster_48 2 + 0.0740740740741 +FBtr0080647 0 27 cluster_49 2 + 0.0740740740741 +FBtr0080660 0 27 cluster_50 6 + 0.222222222222 +FBtr0080663 0 27 cluster_51 69 + 2.55555555556 +FBtr0080663 13 32 cluster_52 2 + 0.105263157895 +FBtr0080663 50 70 cluster_53 1 + 0.05 +FBtr0080664 0 35 cluster_54 78 + 2.22857142857 +FBtr0080664 32 56 cluster_55 2 + 0.0833333333333
--- a/test-data/bed4.bed Wed Apr 10 06:38:33 2019 -0400 +++ b/test-data/bed4.bed Sun Apr 14 14:43:44 2019 -0400 @@ -1,9 +1,7 @@ FBtr0070001 26 53 cluster_1 42 + 1.55555555556 -FBtr0070603 0 62 cluster_2 68 + 1.09677419355 -FBtr0070604 29 53 cluster_3 36 + 1.5 -FBtr0078580 0 47 cluster_4 1102 + 23.4468085106 -FBtr0079528 0 38 cluster_5 97 + 2.55263157895 -FBtr0079596 0 33 cluster_6 148 + 4.48484848485 -FBtr0080609 0 44 cluster_7 60 + 1.36363636364 -FBtr0080663 0 34 cluster_8 102 + 3.0 -FBtr0080664 0 35 cluster_9 108 + 3.08571428571 +FBtr0070604 30 53 cluster_2 34 + 1.47826086957 +FBtr0078580 0 52 cluster_3 452 + 8.69230769231 +FBtr0079528 0 38 cluster_4 77 + 2.02631578947 +FBtr0079596 0 24 cluster_5 50 + 2.08333333333 +FBtr0080663 0 27 cluster_6 69 + 2.55555555556 +FBtr0080664 0 35 cluster_7 78 + 2.22857142857
--- a/test-data/bed5.bed Wed Apr 10 06:38:33 2019 -0400 +++ b/test-data/bed5.bed Sun Apr 14 14:43:44 2019 -0400 @@ -1,15 +1,10 @@ -FBtr0070001 6 33 cluster_1 14 . 0.518518518519 -FBtr0070001 26 53 cluster_2 42 . 1.55555555556 -FBtr0070533 11 55 cluster_3 23 . 0.522727272727 -FBtr0070603 0 62 cluster_4 68 . 1.09677419355 -FBtr0070604 29 53 cluster_5 36 . 1.5 -FBtr0078580 0 47 cluster_6 1102 . 23.4468085106 -FBtr0079338 41 63 cluster_7 10 . 0.454545454545 -FBtr0079528 0 38 cluster_8 97 . 2.55263157895 -FBtr0079596 0 33 cluster_9 148 . 4.48484848485 -FBtr0079820 44 74 cluster_10 13 . 0.433333333333 -FBtr0080609 0 44 cluster_11 60 . 1.36363636364 -FBtr0080663 0 34 cluster_12 102 . 3.0 -FBtr0080663 49 70 cluster_13 10 . 0.47619047619 -FBtr0080664 0 35 cluster_14 108 . 3.08571428571 -FBtr0080664 49 71 cluster_15 11 . 0.5 +FBtr0070001 26 53 cluster_1 42 . 1.55555555556 +FBtr0070603 11 53 cluster_2 35 . 0.833333333333 +FBtr0070604 30 53 cluster_3 34 . 1.47826086957 +FBtr0078580 0 52 cluster_4 452 . 8.69230769231 +FBtr0079338 41 63 cluster_5 9 . 0.409090909091 +FBtr0079528 0 38 cluster_6 77 . 2.02631578947 +FBtr0079596 0 24 cluster_7 50 . 2.08333333333 +FBtr0080609 0 23 cluster_8 17 . 0.739130434783 +FBtr0080663 0 27 cluster_9 69 . 2.55555555556 +FBtr0080664 0 35 cluster_10 78 . 2.22857142857
--- a/test-data/clustering.tab Wed Apr 10 06:38:33 2019 -0400 +++ b/test-data/clustering.tab Sun Apr 14 14:43:44 2019 -0400 @@ -1,119 +1,97 @@ Dataset Chromosome Chrom_length Coordinate Polarity Counts Start-End Cluster Size density -input1.bam FBtr0070001 72 1 F 1 1-17 17 0.0588235294118 -input1.bam FBtr0070001 72 12 F 14 7-33 27 0.518518518519 +input1.bam FBtr0070001 72 1 F 0 1-1 1 0.0 +input1.bam FBtr0070001 72 12 F 12 7-39 33 0.363636363636 input1.bam FBtr0070001 72 30 F 42 27-53 27 1.55555555556 input1.bam FBtr0070001 72 72 F 0 72-72 1 0.0 -input1.bam FBtr0070533 72 1 F 1 1-15 15 0.0666666666667 -input1.bam FBtr0070533 72 25 F 23 12-55 44 0.522727272727 +input1.bam FBtr0070533 72 1 F 0 1-1 1 0.0 +input1.bam FBtr0070533 72 20 F 7 19-41 23 0.304347826087 +input1.bam FBtr0070533 72 32 F 7 28-55 28 0.25 input1.bam FBtr0070533 72 72 F 0 72-72 1 0.0 -input1.bam FBtr0070603 72 21 F 68 1-62 62 1.09677419355 -input1.bam FBtr0070603 72 53 F 2 51-71 21 0.0952380952381 +input1.bam FBtr0070603 72 2 F 2 1-23 23 0.0869565217391 +input1.bam FBtr0070603 72 23 F 35 12-53 42 0.833333333333 +input1.bam FBtr0070603 72 42 F 1 42-62 21 0.047619047619 input1.bam FBtr0070603 72 72 F 0 72-72 1 0.0 -input1.bam FBtr0070604 72 1 F 1 1-15 15 0.0666666666667 +input1.bam FBtr0070604 72 1 F 0 1-1 1 0.0 input1.bam FBtr0070604 72 20 F 2 18-40 23 0.0869565217391 -input1.bam FBtr0070604 72 31 F 36 30-53 24 1.5 -input1.bam FBtr0070604 72 57 F 1 57-71 15 0.0666666666667 +input1.bam FBtr0070604 72 31 F 34 31-53 23 1.47826086957 input1.bam FBtr0070604 72 72 F 0 72-72 1 0.0 input1.bam FBtr0070911 73 1 F 0 1-1 1 0.0 input1.bam FBtr0070911 73 15 F 1 15-35 21 0.047619047619 -input1.bam FBtr0070911 73 38 F 1 38-52 15 0.0666666666667 input1.bam FBtr0070911 73 73 F 0 73-73 1 0.0 input1.bam FBtr0078490 72 1 F 0 1-1 1 0.0 -input1.bam FBtr0078490 72 15 F 4 13-32 20 0.2 -input1.bam FBtr0078490 72 26 F 3 25-50 26 0.115384615385 -input1.bam FBtr0078490 72 38 F 1 38-55 18 0.0555555555556 +input1.bam FBtr0078490 72 28 F 1 28-50 23 0.0434782608696 input1.bam FBtr0078490 72 72 F 0 72-72 1 0.0 -input1.bam FBtr0078580 72 16 F 1102 1-47 47 23.4468085106 -input1.bam FBtr0078580 72 52 F 2 52-68 17 0.117647058824 +input1.bam FBtr0078580 72 13 F 452 1-52 52 8.69230769231 input1.bam FBtr0078580 72 72 F 0 72-72 1 0.0 input1.bam FBtr0078790 73 1 F 1 1-19 19 0.0526315789474 -input1.bam FBtr0078790 73 17 F 2 17-32 16 0.125 input1.bam FBtr0078790 73 33 F 1 33-55 23 0.0434782608696 -input1.bam FBtr0078790 73 47 F 9 42-71 30 0.3 -input1.bam FBtr0078790 73 69 R 1 55-69 15 0.0666666666667 +input1.bam FBtr0078790 73 43 F 4 42-63 22 0.181818181818 +input1.bam FBtr0078790 73 52 F 1 52-71 20 0.05 input1.bam FBtr0078790 73 73 F 0 73-73 1 0.0 -input1.bam FBtr0079064 72 2 F 2 1-23 23 0.0869565217391 -input1.bam FBtr0079064 72 33 F 1 33-47 15 0.0666666666667 -input1.bam FBtr0079064 72 52 F 1 52-68 17 0.0588235294118 +input1.bam FBtr0079064 72 2 F 1 1-23 23 0.0434782608696 input1.bam FBtr0079064 72 72 F 0 72-72 1 0.0 -input1.bam FBtr0079090 72 1 F 2 1-28 28 0.0714285714286 +input1.bam FBtr0079090 72 1 F 1 1-28 28 0.0357142857143 input1.bam FBtr0079090 72 26 F 1 26-49 24 0.0416666666667 -input1.bam FBtr0079090 72 33 F 1 33-48 16 0.0625 -input1.bam FBtr0079090 72 53 F 1 53-70 18 0.0555555555556 input1.bam FBtr0079090 72 56 R 1 36-56 21 0.047619047619 input1.bam FBtr0079090 72 72 F 0 72-72 1 0.0 input1.bam FBtr0079338 73 1 F 0 1-1 1 0.0 -input1.bam FBtr0079338 73 14 F 5 12-31 20 0.25 -input1.bam FBtr0079338 73 25 F 1 25-40 16 0.0625 -input1.bam FBtr0079338 73 44 F 10 42-63 22 0.454545454545 +input1.bam FBtr0079338 73 13 F 1 13-31 19 0.0526315789474 +input1.bam FBtr0079338 73 42 F 9 42-63 22 0.409090909091 input1.bam FBtr0079338 73 73 F 0 73-73 1 0.0 -input1.bam FBtr0079528 71 9 F 97 1-38 38 2.55263157895 -input1.bam FBtr0079528 71 28 F 1 28-43 16 0.0625 -input1.bam FBtr0079528 71 36 F 3 35-54 20 0.15 -input1.bam FBtr0079528 71 51 F 5 51-65 15 0.333333333333 +input1.bam FBtr0079528 71 9 F 77 1-38 38 2.02631578947 +input1.bam FBtr0079528 71 36 F 1 36-55 20 0.05 input1.bam FBtr0079528 71 71 F 0 71-71 1 0.0 -input1.bam FBtr0079596 73 10 F 148 1-33 33 4.48484848485 -input1.bam FBtr0079596 73 53 F 4 53-73 21 0.190476190476 +input1.bam FBtr0079596 73 3 F 50 1-24 24 2.08333333333 +input1.bam FBtr0079596 73 13 F 1 13-33 21 0.047619047619 +input1.bam FBtr0079596 73 53 F 3 53-73 21 0.142857142857 input1.bam FBtr0079596 73 73 F 0 73-73 1 0.0 input1.bam FBtr0079677 72 3 F 2 1-23 23 0.0869565217391 -input1.bam FBtr0079677 72 52 F 2 52-70 19 0.105263157895 +input1.bam FBtr0079677 72 52 F 1 52-70 19 0.0526315789474 input1.bam FBtr0079677 72 72 F 0 72-72 1 0.0 -input1.bam FBtr0079690 72 1 F 1 1-15 15 0.0666666666667 -input1.bam FBtr0079690 72 24 F 2 22-51 30 0.0666666666667 -input1.bam FBtr0079690 72 33 F 2 33-49 17 0.117647058824 +input1.bam FBtr0079690 72 1 F 0 1-1 1 0.0 +input1.bam FBtr0079690 72 27 F 1 27-51 25 0.04 input1.bam FBtr0079690 72 72 F 0 72-72 1 0.0 -input1.bam FBtr0079692 73 1 F 3 1-23 23 0.130434782609 -input1.bam FBtr0079692 73 18 F 1 18-35 18 0.0555555555556 -input1.bam FBtr0079692 73 25 F 1 25-41 17 0.0588235294118 +input1.bam FBtr0079692 73 1 F 2 1-23 23 0.0869565217391 input1.bam FBtr0079692 73 32 F 1 32-51 20 0.05 input1.bam FBtr0079692 73 73 F 0 73-73 1 0.0 -input1.bam FBtr0079693 72 1 F 5 1-24 24 0.208333333333 +input1.bam FBtr0079693 72 1 F 1 1-24 24 0.0416666666667 input1.bam FBtr0079693 72 25 F 1 25-47 23 0.0434782608696 input1.bam FBtr0079693 72 72 F 0 72-72 1 0.0 -input1.bam FBtr0079694 72 1 F 5 1-25 25 0.2 +input1.bam FBtr0079694 72 1 F 3 1-25 25 0.12 input1.bam FBtr0079694 72 18 F 1 18-36 19 0.0526315789474 -input1.bam FBtr0079694 72 52 F 1 52-68 17 0.0588235294118 input1.bam FBtr0079694 72 72 F 0 72-72 1 0.0 -input1.bam FBtr0079702 72 1 F 1 1-15 15 0.0666666666667 -input1.bam FBtr0079702 72 19 F 2 19-36 18 0.111111111111 -input1.bam FBtr0079702 72 56 F 1 56-70 15 0.0666666666667 +input1.bam FBtr0079702 72 1 F 0 1-1 1 0.0 input1.bam FBtr0079702 72 72 F 0 72-72 1 0.0 -input1.bam FBtr0079728 72 1 F 2 1-17 17 0.117647058824 +input1.bam FBtr0079728 72 1 F 0 1-1 1 0.0 input1.bam FBtr0079728 72 8 F 1 8-27 20 0.05 input1.bam FBtr0079728 72 19 F 1 19-42 24 0.0416666666667 -input1.bam FBtr0079728 72 33 F 3 33-49 17 0.176470588235 -input1.bam FBtr0079728 72 56 F 1 56-70 15 0.0666666666667 input1.bam FBtr0079728 72 72 F 0 72-72 1 0.0 -input1.bam FBtr0079729 72 1 F 1 1-15 15 0.0666666666667 +input1.bam FBtr0079729 72 1 F 0 1-1 1 0.0 input1.bam FBtr0079729 72 13 F 1 13-34 22 0.0454545454545 -input1.bam FBtr0079729 72 54 F 2 52-72 21 0.0952380952381 input1.bam FBtr0079729 72 72 F 0 72-72 1 0.0 -input1.bam FBtr0079752 72 1 F 2 1-24 24 0.0833333333333 -input1.bam FBtr0079752 72 9 F 2 7-27 21 0.0952380952381 -input1.bam FBtr0079752 72 33 F 2 33-49 17 0.117647058824 +input1.bam FBtr0079752 72 1 F 1 1-24 24 0.0416666666667 +input1.bam FBtr0079752 72 7 F 1 7-26 20 0.05 input1.bam FBtr0079752 72 52 F 2 52-71 20 0.1 input1.bam FBtr0079752 72 72 F 0 72-72 1 0.0 input1.bam FBtr0079820 74 1 F 0 1-1 1 0.0 -input1.bam FBtr0079820 74 50 F 13 45-74 30 0.433333333333 +input1.bam FBtr0079820 74 50 F 6 45-74 30 0.2 input1.bam FBtr0079820 74 74 F 0 74-74 1 0.0 -input1.bam FBtr0080609 72 10 F 60 1-44 44 1.36363636364 +input1.bam FBtr0080609 72 3 F 17 1-23 23 0.739130434783 +input1.bam FBtr0080609 72 16 F 6 12-44 33 0.181818181818 input1.bam FBtr0080609 72 42 F 1 42-62 21 0.047619047619 -input1.bam FBtr0080609 72 51 F 2 51-66 16 0.125 input1.bam FBtr0080609 72 72 F 0 72-72 1 0.0 -input1.bam FBtr0080644 72 6 F 6 1-27 27 0.222222222222 +input1.bam FBtr0080644 72 2 F 2 1-27 27 0.0740740740741 input1.bam FBtr0080644 72 72 F 0 72-72 1 0.0 -input1.bam FBtr0080646 72 4 F 3 1-27 27 0.111111111111 +input1.bam FBtr0080646 72 4 F 2 1-27 27 0.0740740740741 input1.bam FBtr0080646 72 72 F 0 72-72 1 0.0 -input1.bam FBtr0080647 72 6 F 10 1-27 27 0.37037037037 +input1.bam FBtr0080647 72 4 F 2 1-27 27 0.0740740740741 input1.bam FBtr0080647 72 72 F 0 72-72 1 0.0 -input1.bam FBtr0080660 72 4 F 7 1-27 27 0.259259259259 +input1.bam FBtr0080660 72 4 F 6 1-27 27 0.222222222222 input1.bam FBtr0080660 72 72 F 0 72-72 1 0.0 -input1.bam FBtr0080663 71 9 F 102 1-34 34 3.0 -input1.bam FBtr0080663 71 26 F 1 26-43 18 0.0555555555556 -input1.bam FBtr0080663 71 32 F 2 32-47 16 0.125 -input1.bam FBtr0080663 71 50 F 10 50-70 21 0.47619047619 +input1.bam FBtr0080663 71 4 F 69 1-27 27 2.55555555556 +input1.bam FBtr0080663 71 14 F 2 14-32 19 0.105263157895 +input1.bam FBtr0080663 71 51 F 1 51-70 20 0.05 input1.bam FBtr0080663 71 71 F 0 71-71 1 0.0 -input1.bam FBtr0080664 71 11 F 108 1-35 35 3.08571428571 -input1.bam FBtr0080664 71 33 F 9 28-52 25 0.36 -input1.bam FBtr0080664 71 53 F 11 50-71 22 0.5 +input1.bam FBtr0080664 71 9 F 78 1-35 35 2.22857142857 +input1.bam FBtr0080664 71 34 F 2 33-56 24 0.0833333333333 input1.bam FBtr0080664 71 71 F 0 71-71 1 0.0
--- a/test-data/clustering_unstranded.tab Wed Apr 10 06:38:33 2019 -0400 +++ b/test-data/clustering_unstranded.tab Sun Apr 14 14:43:44 2019 -0400 @@ -1,117 +1,97 @@ Dataset Chromosome Chrom_length Coordinate Polarity Counts Start-End Cluster Size density -input1.bam FBtr0070001 72 1 F 1 1-17 17 0.0588235294118 -input1.bam FBtr0070001 72 12 F 14 7-33 27 0.518518518519 +input1.bam FBtr0070001 72 1 F 0 1-1 1 0.0 +input1.bam FBtr0070001 72 12 F 12 7-39 33 0.363636363636 input1.bam FBtr0070001 72 30 F 42 27-53 27 1.55555555556 input1.bam FBtr0070001 72 72 F 0 72-72 1 0.0 -input1.bam FBtr0070533 72 1 F 1 1-15 15 0.0666666666667 -input1.bam FBtr0070533 72 25 F 23 12-55 44 0.522727272727 +input1.bam FBtr0070533 72 1 F 0 1-1 1 0.0 +input1.bam FBtr0070533 72 20 F 7 19-41 23 0.304347826087 +input1.bam FBtr0070533 72 32 F 7 28-55 28 0.25 input1.bam FBtr0070533 72 72 F 0 72-72 1 0.0 -input1.bam FBtr0070603 72 21 F 68 1-62 62 1.09677419355 -input1.bam FBtr0070603 72 53 F 2 51-71 21 0.0952380952381 +input1.bam FBtr0070603 72 2 F 2 1-23 23 0.0869565217391 +input1.bam FBtr0070603 72 23 F 35 12-53 42 0.833333333333 +input1.bam FBtr0070603 72 42 F 1 42-62 21 0.047619047619 input1.bam FBtr0070603 72 72 F 0 72-72 1 0.0 -input1.bam FBtr0070604 72 1 F 1 1-15 15 0.0666666666667 +input1.bam FBtr0070604 72 1 F 0 1-1 1 0.0 input1.bam FBtr0070604 72 20 F 2 18-40 23 0.0869565217391 -input1.bam FBtr0070604 72 31 F 36 30-53 24 1.5 -input1.bam FBtr0070604 72 57 F 1 57-71 15 0.0666666666667 +input1.bam FBtr0070604 72 31 F 34 31-53 23 1.47826086957 input1.bam FBtr0070604 72 72 F 0 72-72 1 0.0 input1.bam FBtr0070911 73 1 F 0 1-1 1 0.0 input1.bam FBtr0070911 73 15 F 1 15-35 21 0.047619047619 -input1.bam FBtr0070911 73 38 F 1 38-52 15 0.0666666666667 input1.bam FBtr0070911 73 73 F 0 73-73 1 0.0 input1.bam FBtr0078490 72 1 F 0 1-1 1 0.0 -input1.bam FBtr0078490 72 15 F 4 13-32 20 0.2 -input1.bam FBtr0078490 72 26 F 3 25-50 26 0.115384615385 -input1.bam FBtr0078490 72 38 F 1 38-55 18 0.0555555555556 +input1.bam FBtr0078490 72 28 F 1 28-50 23 0.0434782608696 input1.bam FBtr0078490 72 72 F 0 72-72 1 0.0 -input1.bam FBtr0078580 72 16 F 1102 1-47 47 23.4468085106 -input1.bam FBtr0078580 72 52 F 2 52-68 17 0.117647058824 +input1.bam FBtr0078580 72 13 F 452 1-52 52 8.69230769231 input1.bam FBtr0078580 72 72 F 0 72-72 1 0.0 input1.bam FBtr0078790 73 1 F 1 1-19 19 0.0526315789474 -input1.bam FBtr0078790 73 17 F 2 17-32 16 0.125 input1.bam FBtr0078790 73 33 F 1 33-55 23 0.0434782608696 -input1.bam FBtr0078790 73 47 F 9 42-71 30 0.3 -input1.bam FBtr0078790 73 71 F 1 69-73 5 0.2 -input1.bam FBtr0079064 72 2 F 2 1-23 23 0.0869565217391 -input1.bam FBtr0079064 72 33 F 1 33-47 15 0.0666666666667 -input1.bam FBtr0079064 72 52 F 1 52-68 17 0.0588235294118 +input1.bam FBtr0078790 73 43 F 4 42-63 22 0.181818181818 +input1.bam FBtr0078790 73 52 F 1 52-71 20 0.05 +input1.bam FBtr0078790 73 73 F 0 73-73 1 0.0 +input1.bam FBtr0079064 72 2 F 1 1-23 23 0.0434782608696 input1.bam FBtr0079064 72 72 F 0 72-72 1 0.0 -input1.bam FBtr0079090 72 1 F 2 1-28 28 0.0714285714286 +input1.bam FBtr0079090 72 1 F 1 1-28 28 0.0357142857143 input1.bam FBtr0079090 72 26 F 1 26-49 24 0.0416666666667 -input1.bam FBtr0079090 72 33 F 1 33-48 16 0.0625 -input1.bam FBtr0079090 72 54 F 2 53-76 24 0.0833333333333 +input1.bam FBtr0079090 72 56 F 1 56-76 21 0.047619047619 input1.bam FBtr0079090 72 72 F 0 72-72 1 0.0 input1.bam FBtr0079338 73 1 F 0 1-1 1 0.0 -input1.bam FBtr0079338 73 14 F 5 12-31 20 0.25 -input1.bam FBtr0079338 73 25 F 1 25-40 16 0.0625 -input1.bam FBtr0079338 73 44 F 10 42-63 22 0.454545454545 +input1.bam FBtr0079338 73 13 F 1 13-31 19 0.0526315789474 +input1.bam FBtr0079338 73 42 F 9 42-63 22 0.409090909091 input1.bam FBtr0079338 73 73 F 0 73-73 1 0.0 -input1.bam FBtr0079528 71 9 F 97 1-38 38 2.55263157895 -input1.bam FBtr0079528 71 28 F 1 28-43 16 0.0625 -input1.bam FBtr0079528 71 36 F 3 35-54 20 0.15 -input1.bam FBtr0079528 71 51 F 5 51-65 15 0.333333333333 +input1.bam FBtr0079528 71 9 F 77 1-38 38 2.02631578947 +input1.bam FBtr0079528 71 36 F 1 36-55 20 0.05 input1.bam FBtr0079528 71 71 F 0 71-71 1 0.0 -input1.bam FBtr0079596 73 10 F 148 1-33 33 4.48484848485 -input1.bam FBtr0079596 73 53 F 4 53-73 21 0.190476190476 +input1.bam FBtr0079596 73 3 F 50 1-24 24 2.08333333333 +input1.bam FBtr0079596 73 13 F 1 13-33 21 0.047619047619 +input1.bam FBtr0079596 73 53 F 3 53-73 21 0.142857142857 input1.bam FBtr0079596 73 73 F 0 73-73 1 0.0 input1.bam FBtr0079677 72 3 F 2 1-23 23 0.0869565217391 -input1.bam FBtr0079677 72 52 F 2 52-70 19 0.105263157895 +input1.bam FBtr0079677 72 52 F 1 52-70 19 0.0526315789474 input1.bam FBtr0079677 72 72 F 0 72-72 1 0.0 -input1.bam FBtr0079690 72 1 F 1 1-15 15 0.0666666666667 -input1.bam FBtr0079690 72 24 F 2 22-51 30 0.0666666666667 -input1.bam FBtr0079690 72 33 F 2 33-49 17 0.117647058824 +input1.bam FBtr0079690 72 1 F 0 1-1 1 0.0 +input1.bam FBtr0079690 72 27 F 1 27-51 25 0.04 input1.bam FBtr0079690 72 72 F 0 72-72 1 0.0 -input1.bam FBtr0079692 73 1 F 3 1-23 23 0.130434782609 -input1.bam FBtr0079692 73 18 F 1 18-35 18 0.0555555555556 -input1.bam FBtr0079692 73 25 F 1 25-41 17 0.0588235294118 +input1.bam FBtr0079692 73 1 F 2 1-23 23 0.0869565217391 input1.bam FBtr0079692 73 32 F 1 32-51 20 0.05 input1.bam FBtr0079692 73 73 F 0 73-73 1 0.0 -input1.bam FBtr0079693 72 1 F 5 1-24 24 0.208333333333 +input1.bam FBtr0079693 72 1 F 1 1-24 24 0.0416666666667 input1.bam FBtr0079693 72 25 F 1 25-47 23 0.0434782608696 input1.bam FBtr0079693 72 72 F 0 72-72 1 0.0 -input1.bam FBtr0079694 72 1 F 5 1-25 25 0.2 +input1.bam FBtr0079694 72 1 F 3 1-25 25 0.12 input1.bam FBtr0079694 72 18 F 1 18-36 19 0.0526315789474 -input1.bam FBtr0079694 72 52 F 1 52-68 17 0.0588235294118 input1.bam FBtr0079694 72 72 F 0 72-72 1 0.0 -input1.bam FBtr0079702 72 1 F 1 1-15 15 0.0666666666667 -input1.bam FBtr0079702 72 19 F 2 19-36 18 0.111111111111 -input1.bam FBtr0079702 72 56 F 1 56-70 15 0.0666666666667 +input1.bam FBtr0079702 72 1 F 0 1-1 1 0.0 input1.bam FBtr0079702 72 72 F 0 72-72 1 0.0 -input1.bam FBtr0079728 72 1 F 2 1-17 17 0.117647058824 +input1.bam FBtr0079728 72 1 F 0 1-1 1 0.0 input1.bam FBtr0079728 72 8 F 1 8-27 20 0.05 input1.bam FBtr0079728 72 19 F 1 19-42 24 0.0416666666667 -input1.bam FBtr0079728 72 33 F 3 33-49 17 0.176470588235 -input1.bam FBtr0079728 72 56 F 1 56-70 15 0.0666666666667 input1.bam FBtr0079728 72 72 F 0 72-72 1 0.0 -input1.bam FBtr0079729 72 1 F 1 1-15 15 0.0666666666667 +input1.bam FBtr0079729 72 1 F 0 1-1 1 0.0 input1.bam FBtr0079729 72 13 F 1 13-34 22 0.0454545454545 -input1.bam FBtr0079729 72 54 F 2 52-72 21 0.0952380952381 input1.bam FBtr0079729 72 72 F 0 72-72 1 0.0 -input1.bam FBtr0079752 72 1 F 2 1-24 24 0.0833333333333 -input1.bam FBtr0079752 72 9 F 2 7-27 21 0.0952380952381 -input1.bam FBtr0079752 72 33 F 2 33-49 17 0.117647058824 +input1.bam FBtr0079752 72 1 F 1 1-24 24 0.0416666666667 +input1.bam FBtr0079752 72 7 F 1 7-26 20 0.05 input1.bam FBtr0079752 72 52 F 2 52-71 20 0.1 input1.bam FBtr0079752 72 72 F 0 72-72 1 0.0 input1.bam FBtr0079820 74 1 F 0 1-1 1 0.0 -input1.bam FBtr0079820 74 50 F 13 45-74 30 0.433333333333 +input1.bam FBtr0079820 74 50 F 6 45-74 30 0.2 input1.bam FBtr0079820 74 74 F 0 74-74 1 0.0 -input1.bam FBtr0080609 72 10 F 60 1-44 44 1.36363636364 +input1.bam FBtr0080609 72 3 F 17 1-23 23 0.739130434783 +input1.bam FBtr0080609 72 16 F 6 12-44 33 0.181818181818 input1.bam FBtr0080609 72 42 F 1 42-62 21 0.047619047619 -input1.bam FBtr0080609 72 51 F 2 51-66 16 0.125 input1.bam FBtr0080609 72 72 F 0 72-72 1 0.0 -input1.bam FBtr0080644 72 6 F 6 1-27 27 0.222222222222 +input1.bam FBtr0080644 72 2 F 2 1-27 27 0.0740740740741 input1.bam FBtr0080644 72 72 F 0 72-72 1 0.0 -input1.bam FBtr0080646 72 4 F 3 1-27 27 0.111111111111 +input1.bam FBtr0080646 72 4 F 2 1-27 27 0.0740740740741 input1.bam FBtr0080646 72 72 F 0 72-72 1 0.0 -input1.bam FBtr0080647 72 6 F 10 1-27 27 0.37037037037 +input1.bam FBtr0080647 72 4 F 2 1-27 27 0.0740740740741 input1.bam FBtr0080647 72 72 F 0 72-72 1 0.0 -input1.bam FBtr0080660 72 4 F 7 1-27 27 0.259259259259 +input1.bam FBtr0080660 72 4 F 6 1-27 27 0.222222222222 input1.bam FBtr0080660 72 72 F 0 72-72 1 0.0 -input1.bam FBtr0080663 71 9 F 102 1-34 34 3.0 -input1.bam FBtr0080663 71 26 F 1 26-43 18 0.0555555555556 -input1.bam FBtr0080663 71 32 F 2 32-47 16 0.125 -input1.bam FBtr0080663 71 50 F 10 50-70 21 0.47619047619 +input1.bam FBtr0080663 71 4 F 69 1-27 27 2.55555555556 +input1.bam FBtr0080663 71 14 F 2 14-32 19 0.105263157895 +input1.bam FBtr0080663 71 51 F 1 51-70 20 0.05 input1.bam FBtr0080663 71 71 F 0 71-71 1 0.0 -input1.bam FBtr0080664 71 11 F 108 1-35 35 3.08571428571 -input1.bam FBtr0080664 71 33 F 9 28-52 25 0.36 -input1.bam FBtr0080664 71 53 F 11 50-71 22 0.5 +input1.bam FBtr0080664 71 9 F 78 1-35 35 2.22857142857 +input1.bam FBtr0080664 71 34 F 2 33-56 24 0.0833333333333 input1.bam FBtr0080664 71 71 F 0 71-71 1 0.0
--- a/test-data/global_merge.tab Wed Apr 10 06:38:33 2019 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,1045 +0,0 @@ -Dataset Chromosome Polarity Size Counts -input1.bam FBtr0070001 F 16 2 -input1.bam FBtr0070001 F 17 1 -input1.bam FBtr0070001 F 18 0 -input1.bam FBtr0070001 F 19 1 -input1.bam FBtr0070001 F 20 4 -input1.bam FBtr0070001 F 21 4 -input1.bam FBtr0070001 F 22 29 -input1.bam FBtr0070001 F 23 15 -input1.bam FBtr0070001 F 24 1 -input1.bam FBtr0070001 R 16 0 -input1.bam FBtr0070001 R 17 0 -input1.bam FBtr0070001 R 18 0 -input1.bam FBtr0070001 R 19 0 -input1.bam FBtr0070001 R 20 0 -input1.bam FBtr0070001 R 21 0 -input1.bam FBtr0070001 R 22 0 -input1.bam FBtr0070001 R 23 0 -input1.bam FBtr0070001 R 24 0 -input1.bam FBtr0070533 F 15 2 -input1.bam FBtr0070533 F 16 1 -input1.bam FBtr0070533 F 17 1 -input1.bam FBtr0070533 F 18 6 -input1.bam FBtr0070533 F 19 3 -input1.bam FBtr0070533 F 20 2 -input1.bam FBtr0070533 F 21 2 -input1.bam FBtr0070533 F 22 4 -input1.bam FBtr0070533 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--- a/test-data/input1_cluster5_counts.tab Wed Apr 10 06:38:33 2019 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,132 +0,0 @@ -Dataset Chromosome Chrom_length Coordinate Polarity Counts -input1.bam FBtr0070001 72 1 F 1 -input1.bam FBtr0070001 72 12 F 14 -input1.bam FBtr0070001 72 30 F 42 -input1.bam FBtr0070001 72 72 F 0 -input1.bam FBtr0070533 72 1 F 1 -input1.bam FBtr0070533 72 25 F 23 -input1.bam FBtr0070533 72 72 F 0 -input1.bam FBtr0070603 72 1 F 0 -input1.bam FBtr0070603 72 21 F 68 -input1.bam FBtr0070603 72 53 F 2 -input1.bam FBtr0070603 72 72 F 0 -input1.bam FBtr0070604 72 1 F 1 -input1.bam FBtr0070604 72 20 F 2 -input1.bam FBtr0070604 72 31 F 36 -input1.bam FBtr0070604 72 57 F 1 -input1.bam FBtr0070604 72 72 F 0 -input1.bam FBtr0070911 73 1 F 0 -input1.bam FBtr0070911 73 15 F 1 -input1.bam FBtr0070911 73 38 F 1 -input1.bam FBtr0070911 73 73 F 0 -input1.bam FBtr0078490 72 1 F 0 -input1.bam FBtr0078490 72 15 F 4 -input1.bam FBtr0078490 72 26 F 3 -input1.bam FBtr0078490 72 38 F 1 -input1.bam FBtr0078490 72 72 F 0 -input1.bam FBtr0078580 72 1 F 0 -input1.bam FBtr0078580 72 16 F 1102 -input1.bam FBtr0078580 72 52 F 2 -input1.bam FBtr0078580 72 72 F 0 -input1.bam FBtr0078790 73 1 F 1 -input1.bam FBtr0078790 73 17 F 2 -input1.bam FBtr0078790 73 33 F 1 -input1.bam FBtr0078790 73 47 F 9 -input1.bam FBtr0078790 73 69 R 1 -input1.bam FBtr0078790 73 73 F 0 -input1.bam FBtr0079064 72 1 F 0 -input1.bam FBtr0079064 72 2 F 2 -input1.bam FBtr0079064 72 33 F 1 -input1.bam FBtr0079064 72 52 F 1 -input1.bam FBtr0079064 72 72 F 0 -input1.bam FBtr0079090 72 1 F 2 -input1.bam FBtr0079090 72 26 F 1 -input1.bam FBtr0079090 72 33 F 1 -input1.bam FBtr0079090 72 53 F 1 -input1.bam FBtr0079090 72 56 R 1 -input1.bam FBtr0079090 72 72 F 0 -input1.bam FBtr0079338 73 1 F 0 -input1.bam FBtr0079338 73 14 F 5 -input1.bam FBtr0079338 73 25 F 1 -input1.bam FBtr0079338 73 44 F 10 -input1.bam FBtr0079338 73 73 F 0 -input1.bam FBtr0079528 71 1 F 0 -input1.bam FBtr0079528 71 9 F 97 -input1.bam FBtr0079528 71 28 F 1 -input1.bam FBtr0079528 71 36 F 3 -input1.bam FBtr0079528 71 51 F 5 -input1.bam FBtr0079528 71 71 F 0 -input1.bam FBtr0079596 73 1 F 0 -input1.bam FBtr0079596 73 10 F 148 -input1.bam FBtr0079596 73 53 F 4 -input1.bam FBtr0079596 73 73 F 0 -input1.bam FBtr0079677 72 1 F 0 -input1.bam FBtr0079677 72 3 F 2 -input1.bam FBtr0079677 72 52 F 2 -input1.bam FBtr0079677 72 72 F 0 -input1.bam FBtr0079690 72 1 F 1 -input1.bam FBtr0079690 72 24 F 2 -input1.bam FBtr0079690 72 33 F 2 -input1.bam FBtr0079690 72 72 F 0 -input1.bam FBtr0079692 73 1 F 3 -input1.bam FBtr0079692 73 18 F 1 -input1.bam FBtr0079692 73 25 F 1 -input1.bam FBtr0079692 73 32 F 1 -input1.bam FBtr0079692 73 73 F 0 -input1.bam FBtr0079693 72 1 F 5 -input1.bam FBtr0079693 72 25 F 1 -input1.bam FBtr0079693 72 72 F 0 -input1.bam FBtr0079694 72 1 F 5 -input1.bam FBtr0079694 72 18 F 1 -input1.bam FBtr0079694 72 52 F 1 -input1.bam FBtr0079694 72 72 F 0 -input1.bam FBtr0079702 72 1 F 1 -input1.bam FBtr0079702 72 19 F 2 -input1.bam FBtr0079702 72 56 F 1 -input1.bam FBtr0079702 72 72 F 0 -input1.bam FBtr0079728 72 1 F 2 -input1.bam FBtr0079728 72 8 F 1 -input1.bam FBtr0079728 72 19 F 1 -input1.bam FBtr0079728 72 33 F 3 -input1.bam FBtr0079728 72 56 F 1 -input1.bam FBtr0079728 72 72 F 0 -input1.bam FBtr0079729 72 1 F 1 -input1.bam FBtr0079729 72 13 F 1 -input1.bam FBtr0079729 72 54 F 2 -input1.bam FBtr0079729 72 72 F 0 -input1.bam FBtr0079752 72 1 F 2 -input1.bam FBtr0079752 72 9 F 2 -input1.bam FBtr0079752 72 33 F 2 -input1.bam FBtr0079752 72 52 F 2 -input1.bam FBtr0079752 72 72 F 0 -input1.bam FBtr0079820 74 1 F 0 -input1.bam FBtr0079820 74 50 F 13 -input1.bam FBtr0079820 74 74 F 0 -input1.bam FBtr0080609 72 1 F 0 -input1.bam FBtr0080609 72 10 F 60 -input1.bam FBtr0080609 72 42 F 1 -input1.bam FBtr0080609 72 51 F 2 -input1.bam FBtr0080609 72 72 F 0 -input1.bam FBtr0080644 72 1 F 0 -input1.bam FBtr0080644 72 6 F 6 -input1.bam FBtr0080644 72 72 F 0 -input1.bam FBtr0080646 72 1 F 0 -input1.bam FBtr0080646 72 4 F 3 -input1.bam FBtr0080646 72 72 F 0 -input1.bam FBtr0080647 72 1 F 0 -input1.bam FBtr0080647 72 6 F 10 -input1.bam FBtr0080647 72 72 F 0 -input1.bam FBtr0080660 72 1 F 0 -input1.bam FBtr0080660 72 4 F 7 -input1.bam FBtr0080660 72 72 F 0 -input1.bam FBtr0080663 71 1 F 0 -input1.bam FBtr0080663 71 9 F 102 -input1.bam FBtr0080663 71 26 F 1 -input1.bam FBtr0080663 71 32 F 2 -input1.bam FBtr0080663 71 50 F 10 -input1.bam FBtr0080663 71 71 F 0 -input1.bam FBtr0080664 71 1 F 0 -input1.bam FBtr0080664 71 11 F 108 -input1.bam FBtr0080664 71 33 F 9 -input1.bam FBtr0080664 71 53 F 11 -input1.bam FBtr0080664 71 71 F 0
--- a/test-data/input1_counts.tab Wed Apr 10 06:38:33 2019 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,300 +0,0 @@ -Dataset Chromosome Chrom_length Coordinate Polarity Counts -input1.bam FBtr0070001 72 1 F 1 -input1.bam FBtr0070001 72 7 F 6 -input1.bam FBtr0070001 72 8 F 3 -input1.bam FBtr0070001 72 11 F 2 -input1.bam FBtr0070001 72 16 F 1 -input1.bam FBtr0070001 72 17 F 1 -input1.bam FBtr0070001 72 18 F 1 -input1.bam FBtr0070001 72 27 F 2 -input1.bam FBtr0070001 72 30 F 1 -input1.bam FBtr0070001 72 31 F 11 -input1.bam FBtr0070001 72 32 F 27 -input1.bam FBtr0070001 72 34 F 1 -input1.bam FBtr0070001 72 72 F 0 -input1.bam FBtr0070533 72 1 F 1 -input1.bam FBtr0070533 72 12 F 2 -input1.bam FBtr0070533 72 15 F 1 -input1.bam FBtr0070533 72 19 F 5 -input1.bam FBtr0070533 72 20 F 1 -input1.bam FBtr0070533 72 21 F 1 -input1.bam FBtr0070533 72 22 F 1 -input1.bam FBtr0070533 72 25 F 1 -input1.bam FBtr0070533 72 26 F 1 -input1.bam FBtr0070533 72 28 F 1 -input1.bam FBtr0070533 72 32 F 4 -input1.bam FBtr0070533 72 35 F 1 -input1.bam FBtr0070533 72 37 F 2 -input1.bam FBtr0070533 72 38 F 2 -input1.bam FBtr0070533 72 72 F 0 -input1.bam FBtr0070603 72 1 F 2 -input1.bam FBtr0070603 72 3 F 1 -input1.bam FBtr0070603 72 4 F 1 -input1.bam FBtr0070603 72 6 F 1 -input1.bam FBtr0070603 72 7 F 7 -input1.bam FBtr0070603 72 8 F 4 -input1.bam FBtr0070603 72 9 F 7 -input1.bam FBtr0070603 72 12 F 2 -input1.bam FBtr0070603 72 13 F 1 -input1.bam FBtr0070603 72 15 F 2 -input1.bam FBtr0070603 72 16 F 2 -input1.bam FBtr0070603 72 17 F 3 -input1.bam FBtr0070603 72 18 F 1 -input1.bam FBtr0070603 72 19 F 9 -input1.bam FBtr0070603 72 20 F 3 -input1.bam FBtr0070603 72 21 F 1 -input1.bam FBtr0070603 72 22 F 3 -input1.bam FBtr0070603 72 24 F 2 -input1.bam FBtr0070603 72 25 F 1 -input1.bam FBtr0070603 72 26 F 6 -input1.bam FBtr0070603 72 27 F 3 -input1.bam FBtr0070603 72 32 F 1 -input1.bam FBtr0070603 72 34 F 3 -input1.bam FBtr0070603 72 38 F 1 -input1.bam FBtr0070603 72 42 F 1 -input1.bam FBtr0070603 72 51 F 1 -input1.bam FBtr0070603 72 56 F 1 -input1.bam FBtr0070603 72 72 F 0 -input1.bam FBtr0070604 72 1 F 1 -input1.bam FBtr0070604 72 18 F 1 -input1.bam FBtr0070604 72 22 F 1 -input1.bam FBtr0070604 72 30 F 2 -input1.bam FBtr0070604 72 31 F 10 -input1.bam FBtr0070604 72 32 F 24 -input1.bam FBtr0070604 72 57 F 1 -input1.bam FBtr0070604 72 72 F 0 -input1.bam FBtr0070911 73 1 F 0 -input1.bam FBtr0070911 73 15 F 1 -input1.bam FBtr0070911 73 38 F 1 -input1.bam FBtr0070911 73 73 F 0 -input1.bam FBtr0078490 72 1 F 0 -input1.bam FBtr0078490 72 13 F 2 -input1.bam FBtr0078490 72 17 F 1 -input1.bam FBtr0078490 72 18 F 1 -input1.bam FBtr0078490 72 25 F 1 -input1.bam FBtr0078490 72 28 F 2 -input1.bam FBtr0078490 72 38 F 1 -input1.bam FBtr0078490 72 72 F 0 -input1.bam FBtr0078580 72 1 F 1041 -input1.bam FBtr0078580 72 3 F 3 -input1.bam FBtr0078580 72 4 F 4 -input1.bam FBtr0078580 72 5 F 5 -input1.bam FBtr0078580 72 6 F 4 -input1.bam FBtr0078580 72 7 F 1 -input1.bam FBtr0078580 72 8 F 2 -input1.bam FBtr0078580 72 11 F 1 -input1.bam FBtr0078580 72 12 F 13 -input1.bam FBtr0078580 72 14 F 7 -input1.bam FBtr0078580 72 15 F 1 -input1.bam FBtr0078580 72 16 F 4 -input1.bam FBtr0078580 72 17 F 1 -input1.bam FBtr0078580 72 19 F 1 -input1.bam FBtr0078580 72 20 F 2 -input1.bam FBtr0078580 72 21 F 5 -input1.bam FBtr0078580 72 24 F 3 -input1.bam FBtr0078580 72 25 F 2 -input1.bam FBtr0078580 72 29 F 1 -input1.bam FBtr0078580 72 31 F 1 -input1.bam FBtr0078580 72 52 F 2 -input1.bam FBtr0078580 72 72 F 0 -input1.bam FBtr0078790 73 1 F 1 -input1.bam FBtr0078790 73 17 F 2 -input1.bam FBtr0078790 73 33 F 1 -input1.bam FBtr0078790 73 42 F 4 -input1.bam FBtr0078790 73 44 F 2 -input1.bam FBtr0078790 73 46 F 1 -input1.bam FBtr0078790 73 47 F 1 -input1.bam FBtr0078790 73 52 F 1 -input1.bam FBtr0078790 73 69 R 1 -input1.bam FBtr0078790 73 73 F 0 -input1.bam FBtr0079064 72 1 F 1 -input1.bam FBtr0079064 72 3 F 1 -input1.bam FBtr0079064 72 33 F 1 -input1.bam FBtr0079064 72 52 F 1 -input1.bam FBtr0079064 72 72 F 0 -input1.bam FBtr0079090 72 1 F 2 -input1.bam FBtr0079090 72 26 F 1 -input1.bam FBtr0079090 72 33 F 1 -input1.bam FBtr0079090 72 53 F 1 -input1.bam FBtr0079090 72 56 R 1 -input1.bam FBtr0079090 72 72 F 0 -input1.bam FBtr0079338 73 1 F 0 -input1.bam FBtr0079338 73 12 F 1 -input1.bam FBtr0079338 73 13 F 2 -input1.bam FBtr0079338 73 14 F 1 -input1.bam FBtr0079338 73 17 F 1 -input1.bam FBtr0079338 73 25 F 1 -input1.bam FBtr0079338 73 42 F 8 -input1.bam FBtr0079338 73 43 F 1 -input1.bam FBtr0079338 73 46 F 1 -input1.bam FBtr0079338 73 73 F 0 -input1.bam FBtr0079528 71 1 F 19 -input1.bam FBtr0079528 71 3 F 55 -input1.bam FBtr0079528 71 4 F 2 -input1.bam FBtr0079528 71 8 F 4 -input1.bam FBtr0079528 71 10 F 1 -input1.bam FBtr0079528 71 11 F 2 -input1.bam FBtr0079528 71 13 F 1 -input1.bam FBtr0079528 71 14 F 4 -input1.bam FBtr0079528 71 16 F 1 -input1.bam FBtr0079528 71 17 F 4 -input1.bam FBtr0079528 71 18 F 4 -input1.bam FBtr0079528 71 28 F 1 -input1.bam FBtr0079528 71 35 F 1 -input1.bam FBtr0079528 71 36 F 1 -input1.bam FBtr0079528 71 37 F 1 -input1.bam FBtr0079528 71 51 F 5 -input1.bam FBtr0079528 71 71 F 0 -input1.bam FBtr0079596 73 1 F 13 -input1.bam FBtr0079596 73 3 F 13 -input1.bam FBtr0079596 73 4 F 31 -input1.bam FBtr0079596 73 5 F 2 -input1.bam FBtr0079596 73 6 F 11 -input1.bam FBtr0079596 73 8 F 9 -input1.bam FBtr0079596 73 9 F 12 -input1.bam FBtr0079596 73 10 F 3 -input1.bam FBtr0079596 73 11 F 19 -input1.bam FBtr0079596 73 12 F 1 -input1.bam FBtr0079596 73 13 F 20 -input1.bam FBtr0079596 73 14 F 6 -input1.bam FBtr0079596 73 15 F 1 -input1.bam FBtr0079596 73 16 F 3 -input1.bam FBtr0079596 73 17 F 2 -input1.bam FBtr0079596 73 18 F 1 -input1.bam FBtr0079596 73 19 F 1 -input1.bam FBtr0079596 73 53 F 2 -input1.bam FBtr0079596 73 54 F 2 -input1.bam FBtr0079596 73 73 F 0 -input1.bam FBtr0079677 72 1 F 1 -input1.bam FBtr0079677 72 5 F 1 -input1.bam FBtr0079677 72 52 F 1 -input1.bam FBtr0079677 72 53 F 1 -input1.bam FBtr0079677 72 72 F 0 -input1.bam FBtr0079690 72 1 F 1 -input1.bam FBtr0079690 72 22 F 1 -input1.bam FBtr0079690 72 27 F 1 -input1.bam FBtr0079690 72 33 F 2 -input1.bam FBtr0079690 72 72 F 0 -input1.bam FBtr0079692 73 1 F 3 -input1.bam FBtr0079692 73 18 F 1 -input1.bam FBtr0079692 73 25 F 1 -input1.bam FBtr0079692 73 32 F 1 -input1.bam FBtr0079692 73 73 F 0 -input1.bam FBtr0079693 72 1 F 5 -input1.bam FBtr0079693 72 25 F 1 -input1.bam FBtr0079693 72 72 F 0 -input1.bam FBtr0079694 72 1 F 5 -input1.bam FBtr0079694 72 18 F 1 -input1.bam FBtr0079694 72 52 F 1 -input1.bam FBtr0079694 72 72 F 0 -input1.bam FBtr0079702 72 1 F 1 -input1.bam FBtr0079702 72 19 F 2 -input1.bam FBtr0079702 72 56 F 1 -input1.bam FBtr0079702 72 72 F 0 -input1.bam FBtr0079728 72 1 F 2 -input1.bam FBtr0079728 72 8 F 1 -input1.bam FBtr0079728 72 19 F 1 -input1.bam FBtr0079728 72 33 F 3 -input1.bam FBtr0079728 72 56 F 1 -input1.bam FBtr0079728 72 72 F 0 -input1.bam FBtr0079729 72 1 F 1 -input1.bam FBtr0079729 72 13 F 1 -input1.bam FBtr0079729 72 52 F 1 -input1.bam FBtr0079729 72 57 F 1 -input1.bam FBtr0079729 72 72 F 0 -input1.bam FBtr0079752 72 1 F 2 -input1.bam FBtr0079752 72 7 F 1 -input1.bam FBtr0079752 72 12 F 1 -input1.bam FBtr0079752 72 33 F 2 -input1.bam FBtr0079752 72 52 F 2 -input1.bam FBtr0079752 72 72 F 0 -input1.bam FBtr0079820 74 1 F 0 -input1.bam FBtr0079820 74 45 F 1 -input1.bam FBtr0079820 74 46 F 2 -input1.bam FBtr0079820 74 48 F 1 -input1.bam FBtr0079820 74 49 F 1 -input1.bam FBtr0079820 74 51 F 1 -input1.bam FBtr0079820 74 54 F 4 -input1.bam FBtr0079820 74 55 F 1 -input1.bam FBtr0079820 74 56 F 2 -input1.bam FBtr0079820 74 74 F 0 -input1.bam FBtr0080609 72 1 F 13 -input1.bam FBtr0080609 72 3 F 2 -input1.bam FBtr0080609 72 4 F 10 -input1.bam FBtr0080609 72 5 F 2 -input1.bam FBtr0080609 72 7 F 19 -input1.bam FBtr0080609 72 8 F 4 -input1.bam FBtr0080609 72 9 F 3 -input1.bam FBtr0080609 72 12 F 1 -input1.bam FBtr0080609 72 15 F 1 -input1.bam FBtr0080609 72 16 F 1 -input1.bam FBtr0080609 72 17 F 2 -input1.bam FBtr0080609 72 19 F 1 -input1.bam FBtr0080609 72 20 F 1 -input1.bam FBtr0080609 72 42 F 1 -input1.bam FBtr0080609 72 51 F 1 -input1.bam FBtr0080609 72 52 F 1 -input1.bam FBtr0080609 72 72 F 0 -input1.bam FBtr0080644 72 1 F 1 -input1.bam FBtr0080644 72 4 F 2 -input1.bam FBtr0080644 72 7 F 1 -input1.bam FBtr0080644 72 12 F 2 -input1.bam FBtr0080644 72 72 F 0 -input1.bam FBtr0080646 72 1 F 1 -input1.bam FBtr0080646 72 6 F 1 -input1.bam FBtr0080646 72 7 F 1 -input1.bam FBtr0080646 72 72 F 0 -input1.bam FBtr0080647 72 1 F 3 -input1.bam FBtr0080647 72 3 F 1 -input1.bam FBtr0080647 72 6 F 2 -input1.bam FBtr0080647 72 8 F 1 -input1.bam FBtr0080647 72 11 F 2 -input1.bam FBtr0080647 72 12 F 1 -input1.bam FBtr0080647 72 72 F 0 -input1.bam FBtr0080660 72 1 F 0 -input1.bam FBtr0080660 72 4 F 4 -input1.bam FBtr0080660 72 7 F 3 -input1.bam FBtr0080660 72 72 F 0 -input1.bam FBtr0080663 71 1 F 22 -input1.bam FBtr0080663 71 3 F 56 -input1.bam FBtr0080663 71 4 F 4 -input1.bam FBtr0080663 71 7 F 1 -input1.bam FBtr0080663 71 8 F 4 -input1.bam FBtr0080663 71 12 F 2 -input1.bam FBtr0080663 71 14 F 2 -input1.bam FBtr0080663 71 15 F 1 -input1.bam FBtr0080663 71 16 F 3 -input1.bam FBtr0080663 71 17 F 7 -input1.bam FBtr0080663 71 26 F 1 -input1.bam FBtr0080663 71 32 F 2 -input1.bam FBtr0080663 71 50 F 1 -input1.bam FBtr0080663 71 51 F 9 -input1.bam FBtr0080663 71 71 F 0 -input1.bam FBtr0080664 71 1 F 16 -input1.bam FBtr0080664 71 3 F 56 -input1.bam FBtr0080664 71 4 F 4 -input1.bam FBtr0080664 71 6 F 1 -input1.bam FBtr0080664 71 7 F 1 -input1.bam FBtr0080664 71 8 F 4 -input1.bam FBtr0080664 71 9 F 1 -input1.bam FBtr0080664 71 11 F 3 -input1.bam FBtr0080664 71 12 F 3 -input1.bam FBtr0080664 71 13 F 2 -input1.bam FBtr0080664 71 14 F 3 -input1.bam FBtr0080664 71 16 F 2 -input1.bam FBtr0080664 71 17 F 10 -input1.bam FBtr0080664 71 18 F 1 -input1.bam FBtr0080664 71 21 F 1 -input1.bam FBtr0080664 71 28 F 2 -input1.bam FBtr0080664 71 32 F 1 -input1.bam FBtr0080664 71 33 F 1 -input1.bam FBtr0080664 71 34 F 1 -input1.bam FBtr0080664 71 35 F 1 -input1.bam FBtr0080664 71 36 F 1 -input1.bam FBtr0080664 71 37 F 1 -input1.bam FBtr0080664 71 38 F 1 -input1.bam FBtr0080664 71 50 F 2 -input1.bam FBtr0080664 71 51 F 7 -input1.bam FBtr0080664 71 52 F 1 -input1.bam FBtr0080664 71 56 F 1 -input1.bam FBtr0080664 71 71 F 0
--- a/test-data/input1_counts_yminneg5_5.tab Wed Apr 10 06:38:33 2019 -0400 +++ b/test-data/input1_counts_yminneg5_5.tab Sun Apr 14 14:43:44 2019 -0400 @@ -1,300 +1,190 @@ Dataset Chromosome Chrom_length Coordinate Polarity Counts -input1.bam FBtr0070001 72 1 F 1 -input1.bam FBtr0070001 72 7 F 6 +input1.bam FBtr0070001 72 1 F 0 +input1.bam FBtr0070001 72 7 F 5 input1.bam FBtr0070001 72 8 F 3 input1.bam FBtr0070001 72 11 F 2 input1.bam FBtr0070001 72 16 F 1 input1.bam FBtr0070001 72 17 F 1 -input1.bam FBtr0070001 72 18 F 1 input1.bam FBtr0070001 72 27 F 2 input1.bam FBtr0070001 72 30 F 1 input1.bam FBtr0070001 72 31 F 11 input1.bam FBtr0070001 72 32 F 27 input1.bam FBtr0070001 72 34 F 1 input1.bam FBtr0070001 72 72 F 0 -input1.bam FBtr0070533 72 1 F 1 -input1.bam FBtr0070533 72 12 F 2 -input1.bam FBtr0070533 72 15 F 1 +input1.bam FBtr0070533 72 1 F 0 input1.bam FBtr0070533 72 19 F 5 input1.bam FBtr0070533 72 20 F 1 -input1.bam FBtr0070533 72 21 F 1 input1.bam FBtr0070533 72 22 F 1 -input1.bam FBtr0070533 72 25 F 1 -input1.bam FBtr0070533 72 26 F 1 input1.bam FBtr0070533 72 28 F 1 -input1.bam FBtr0070533 72 32 F 4 +input1.bam FBtr0070533 72 32 F 3 input1.bam FBtr0070533 72 35 F 1 input1.bam FBtr0070533 72 37 F 2 -input1.bam FBtr0070533 72 38 F 2 input1.bam FBtr0070533 72 72 F 0 -input1.bam FBtr0070603 72 1 F 2 +input1.bam FBtr0070603 72 1 F 0 input1.bam FBtr0070603 72 3 F 1 input1.bam FBtr0070603 72 4 F 1 -input1.bam FBtr0070603 72 6 F 1 -input1.bam FBtr0070603 72 7 F 7 -input1.bam FBtr0070603 72 8 F 4 -input1.bam FBtr0070603 72 9 F 7 -input1.bam FBtr0070603 72 12 F 2 +input1.bam FBtr0070603 72 12 F 1 input1.bam FBtr0070603 72 13 F 1 -input1.bam FBtr0070603 72 15 F 2 -input1.bam FBtr0070603 72 16 F 2 +input1.bam FBtr0070603 72 15 F 1 +input1.bam FBtr0070603 72 16 F 1 input1.bam FBtr0070603 72 17 F 3 -input1.bam FBtr0070603 72 18 F 1 -input1.bam FBtr0070603 72 19 F 9 -input1.bam FBtr0070603 72 20 F 3 +input1.bam FBtr0070603 72 19 F 8 +input1.bam FBtr0070603 72 20 F 2 input1.bam FBtr0070603 72 21 F 1 input1.bam FBtr0070603 72 22 F 3 -input1.bam FBtr0070603 72 24 F 2 +input1.bam FBtr0070603 72 24 F 1 input1.bam FBtr0070603 72 25 F 1 input1.bam FBtr0070603 72 26 F 6 input1.bam FBtr0070603 72 27 F 3 input1.bam FBtr0070603 72 32 F 1 -input1.bam FBtr0070603 72 34 F 3 -input1.bam FBtr0070603 72 38 F 1 +input1.bam FBtr0070603 72 34 F 2 input1.bam FBtr0070603 72 42 F 1 -input1.bam FBtr0070603 72 51 F 1 -input1.bam FBtr0070603 72 56 F 1 input1.bam FBtr0070603 72 72 F 0 -input1.bam FBtr0070604 72 1 F 1 +input1.bam FBtr0070604 72 1 F 0 input1.bam FBtr0070604 72 18 F 1 input1.bam FBtr0070604 72 22 F 1 -input1.bam FBtr0070604 72 30 F 2 input1.bam FBtr0070604 72 31 F 10 input1.bam FBtr0070604 72 32 F 24 -input1.bam FBtr0070604 72 57 F 1 input1.bam FBtr0070604 72 72 F 0 input1.bam FBtr0070911 73 1 F 0 input1.bam FBtr0070911 73 15 F 1 -input1.bam FBtr0070911 73 38 F 1 input1.bam FBtr0070911 73 73 F 0 input1.bam FBtr0078490 72 1 F 0 -input1.bam FBtr0078490 72 13 F 2 -input1.bam FBtr0078490 72 17 F 1 -input1.bam FBtr0078490 72 18 F 1 -input1.bam FBtr0078490 72 25 F 1 -input1.bam FBtr0078490 72 28 F 2 -input1.bam FBtr0078490 72 38 F 1 +input1.bam FBtr0078490 72 28 F 1 input1.bam FBtr0078490 72 72 F 0 -input1.bam FBtr0078580 72 1 F 1041 +input1.bam FBtr0078580 72 1 F 420 input1.bam FBtr0078580 72 3 F 3 input1.bam FBtr0078580 72 4 F 4 input1.bam FBtr0078580 72 5 F 5 -input1.bam FBtr0078580 72 6 F 4 +input1.bam FBtr0078580 72 6 F 2 input1.bam FBtr0078580 72 7 F 1 -input1.bam FBtr0078580 72 8 F 2 +input1.bam FBtr0078580 72 8 F 1 input1.bam FBtr0078580 72 11 F 1 -input1.bam FBtr0078580 72 12 F 13 -input1.bam FBtr0078580 72 14 F 7 -input1.bam FBtr0078580 72 15 F 1 -input1.bam FBtr0078580 72 16 F 4 -input1.bam FBtr0078580 72 17 F 1 +input1.bam FBtr0078580 72 12 F 3 +input1.bam FBtr0078580 72 16 F 3 input1.bam FBtr0078580 72 19 F 1 input1.bam FBtr0078580 72 20 F 2 -input1.bam FBtr0078580 72 21 F 5 -input1.bam FBtr0078580 72 24 F 3 +input1.bam FBtr0078580 72 21 F 4 input1.bam FBtr0078580 72 25 F 2 -input1.bam FBtr0078580 72 29 F 1 -input1.bam FBtr0078580 72 31 F 1 -input1.bam FBtr0078580 72 52 F 2 input1.bam FBtr0078580 72 72 F 0 input1.bam FBtr0078790 73 1 F 1 -input1.bam FBtr0078790 73 17 F 2 input1.bam FBtr0078790 73 33 F 1 -input1.bam FBtr0078790 73 42 F 4 +input1.bam FBtr0078790 73 42 F 2 input1.bam FBtr0078790 73 44 F 2 -input1.bam FBtr0078790 73 46 F 1 -input1.bam FBtr0078790 73 47 F 1 input1.bam FBtr0078790 73 52 F 1 -input1.bam FBtr0078790 73 69 R 1 input1.bam FBtr0078790 73 73 F 0 -input1.bam FBtr0079064 72 1 F 1 +input1.bam FBtr0079064 72 1 F 0 input1.bam FBtr0079064 72 3 F 1 -input1.bam FBtr0079064 72 33 F 1 -input1.bam FBtr0079064 72 52 F 1 input1.bam FBtr0079064 72 72 F 0 -input1.bam FBtr0079090 72 1 F 2 +input1.bam FBtr0079090 72 1 F 1 input1.bam FBtr0079090 72 26 F 1 -input1.bam FBtr0079090 72 33 F 1 -input1.bam FBtr0079090 72 53 F 1 input1.bam FBtr0079090 72 56 R 1 input1.bam FBtr0079090 72 72 F 0 input1.bam FBtr0079338 73 1 F 0 -input1.bam FBtr0079338 73 12 F 1 -input1.bam FBtr0079338 73 13 F 2 -input1.bam FBtr0079338 73 14 F 1 -input1.bam FBtr0079338 73 17 F 1 -input1.bam FBtr0079338 73 25 F 1 +input1.bam FBtr0079338 73 13 F 1 input1.bam FBtr0079338 73 42 F 8 input1.bam FBtr0079338 73 43 F 1 -input1.bam FBtr0079338 73 46 F 1 input1.bam FBtr0079338 73 73 F 0 -input1.bam FBtr0079528 71 1 F 19 +input1.bam FBtr0079528 71 1 F 10 input1.bam FBtr0079528 71 3 F 55 input1.bam FBtr0079528 71 4 F 2 -input1.bam FBtr0079528 71 8 F 4 +input1.bam FBtr0079528 71 8 F 3 input1.bam FBtr0079528 71 10 F 1 -input1.bam FBtr0079528 71 11 F 2 -input1.bam FBtr0079528 71 13 F 1 -input1.bam FBtr0079528 71 14 F 4 -input1.bam FBtr0079528 71 16 F 1 -input1.bam FBtr0079528 71 17 F 4 -input1.bam FBtr0079528 71 18 F 4 -input1.bam FBtr0079528 71 28 F 1 -input1.bam FBtr0079528 71 35 F 1 +input1.bam FBtr0079528 71 11 F 1 +input1.bam FBtr0079528 71 14 F 2 +input1.bam FBtr0079528 71 18 F 3 input1.bam FBtr0079528 71 36 F 1 -input1.bam FBtr0079528 71 37 F 1 -input1.bam FBtr0079528 71 51 F 5 input1.bam FBtr0079528 71 71 F 0 -input1.bam FBtr0079596 73 1 F 13 -input1.bam FBtr0079596 73 3 F 13 +input1.bam FBtr0079596 73 1 F 3 +input1.bam FBtr0079596 73 3 F 11 input1.bam FBtr0079596 73 4 F 31 -input1.bam FBtr0079596 73 5 F 2 -input1.bam FBtr0079596 73 6 F 11 -input1.bam FBtr0079596 73 8 F 9 -input1.bam FBtr0079596 73 9 F 12 -input1.bam FBtr0079596 73 10 F 3 -input1.bam FBtr0079596 73 11 F 19 -input1.bam FBtr0079596 73 12 F 1 -input1.bam FBtr0079596 73 13 F 20 -input1.bam FBtr0079596 73 14 F 6 -input1.bam FBtr0079596 73 15 F 1 -input1.bam FBtr0079596 73 16 F 3 -input1.bam FBtr0079596 73 17 F 2 -input1.bam FBtr0079596 73 18 F 1 -input1.bam FBtr0079596 73 19 F 1 -input1.bam FBtr0079596 73 53 F 2 +input1.bam FBtr0079596 73 5 F 1 +input1.bam FBtr0079596 73 6 F 4 +input1.bam FBtr0079596 73 13 F 1 +input1.bam FBtr0079596 73 53 F 1 input1.bam FBtr0079596 73 54 F 2 input1.bam FBtr0079596 73 73 F 0 input1.bam FBtr0079677 72 1 F 1 input1.bam FBtr0079677 72 5 F 1 input1.bam FBtr0079677 72 52 F 1 -input1.bam FBtr0079677 72 53 F 1 input1.bam FBtr0079677 72 72 F 0 -input1.bam FBtr0079690 72 1 F 1 -input1.bam FBtr0079690 72 22 F 1 +input1.bam FBtr0079690 72 1 F 0 input1.bam FBtr0079690 72 27 F 1 -input1.bam FBtr0079690 72 33 F 2 input1.bam FBtr0079690 72 72 F 0 -input1.bam FBtr0079692 73 1 F 3 -input1.bam FBtr0079692 73 18 F 1 -input1.bam FBtr0079692 73 25 F 1 +input1.bam FBtr0079692 73 1 F 2 input1.bam FBtr0079692 73 32 F 1 input1.bam FBtr0079692 73 73 F 0 -input1.bam FBtr0079693 72 1 F 5 +input1.bam FBtr0079693 72 1 F 1 input1.bam FBtr0079693 72 25 F 1 input1.bam FBtr0079693 72 72 F 0 -input1.bam FBtr0079694 72 1 F 5 +input1.bam FBtr0079694 72 1 F 3 input1.bam FBtr0079694 72 18 F 1 -input1.bam FBtr0079694 72 52 F 1 input1.bam FBtr0079694 72 72 F 0 -input1.bam FBtr0079702 72 1 F 1 -input1.bam FBtr0079702 72 19 F 2 -input1.bam FBtr0079702 72 56 F 1 +input1.bam FBtr0079702 72 1 F 0 input1.bam FBtr0079702 72 72 F 0 -input1.bam FBtr0079728 72 1 F 2 +input1.bam FBtr0079728 72 1 F 0 input1.bam FBtr0079728 72 8 F 1 input1.bam FBtr0079728 72 19 F 1 -input1.bam FBtr0079728 72 33 F 3 -input1.bam FBtr0079728 72 56 F 1 input1.bam FBtr0079728 72 72 F 0 -input1.bam FBtr0079729 72 1 F 1 +input1.bam FBtr0079729 72 1 F 0 input1.bam FBtr0079729 72 13 F 1 -input1.bam FBtr0079729 72 52 F 1 -input1.bam FBtr0079729 72 57 F 1 input1.bam FBtr0079729 72 72 F 0 -input1.bam FBtr0079752 72 1 F 2 +input1.bam FBtr0079752 72 1 F 1 input1.bam FBtr0079752 72 7 F 1 -input1.bam FBtr0079752 72 12 F 1 -input1.bam FBtr0079752 72 33 F 2 input1.bam FBtr0079752 72 52 F 2 input1.bam FBtr0079752 72 72 F 0 input1.bam FBtr0079820 74 1 F 0 input1.bam FBtr0079820 74 45 F 1 -input1.bam FBtr0079820 74 46 F 2 -input1.bam FBtr0079820 74 48 F 1 input1.bam FBtr0079820 74 49 F 1 input1.bam FBtr0079820 74 51 F 1 -input1.bam FBtr0079820 74 54 F 4 -input1.bam FBtr0079820 74 55 F 1 -input1.bam FBtr0079820 74 56 F 2 +input1.bam FBtr0079820 74 54 F 2 +input1.bam FBtr0079820 74 56 F 1 input1.bam FBtr0079820 74 74 F 0 -input1.bam FBtr0080609 72 1 F 13 +input1.bam FBtr0080609 72 1 F 3 input1.bam FBtr0080609 72 3 F 2 input1.bam FBtr0080609 72 4 F 10 input1.bam FBtr0080609 72 5 F 2 -input1.bam FBtr0080609 72 7 F 19 -input1.bam FBtr0080609 72 8 F 4 -input1.bam FBtr0080609 72 9 F 3 input1.bam FBtr0080609 72 12 F 1 input1.bam FBtr0080609 72 15 F 1 input1.bam FBtr0080609 72 16 F 1 -input1.bam FBtr0080609 72 17 F 2 +input1.bam FBtr0080609 72 17 F 1 input1.bam FBtr0080609 72 19 F 1 input1.bam FBtr0080609 72 20 F 1 input1.bam FBtr0080609 72 42 F 1 -input1.bam FBtr0080609 72 51 F 1 -input1.bam FBtr0080609 72 52 F 1 input1.bam FBtr0080609 72 72 F 0 input1.bam FBtr0080644 72 1 F 1 -input1.bam FBtr0080644 72 4 F 2 -input1.bam FBtr0080644 72 7 F 1 -input1.bam FBtr0080644 72 12 F 2 +input1.bam FBtr0080644 72 4 F 1 input1.bam FBtr0080644 72 72 F 0 -input1.bam FBtr0080646 72 1 F 1 +input1.bam FBtr0080646 72 1 F 0 input1.bam FBtr0080646 72 6 F 1 input1.bam FBtr0080646 72 7 F 1 input1.bam FBtr0080646 72 72 F 0 -input1.bam FBtr0080647 72 1 F 3 -input1.bam FBtr0080647 72 3 F 1 -input1.bam FBtr0080647 72 6 F 2 +input1.bam FBtr0080647 72 1 F 0 +input1.bam FBtr0080647 72 6 F 1 input1.bam FBtr0080647 72 8 F 1 -input1.bam FBtr0080647 72 11 F 2 -input1.bam FBtr0080647 72 12 F 1 input1.bam FBtr0080647 72 72 F 0 input1.bam FBtr0080660 72 1 F 0 input1.bam FBtr0080660 72 4 F 4 -input1.bam FBtr0080660 72 7 F 3 +input1.bam FBtr0080660 72 7 F 2 input1.bam FBtr0080660 72 72 F 0 -input1.bam FBtr0080663 71 1 F 22 +input1.bam FBtr0080663 71 1 F 6 input1.bam FBtr0080663 71 3 F 56 input1.bam FBtr0080663 71 4 F 4 -input1.bam FBtr0080663 71 7 F 1 -input1.bam FBtr0080663 71 8 F 4 -input1.bam FBtr0080663 71 12 F 2 +input1.bam FBtr0080663 71 8 F 3 input1.bam FBtr0080663 71 14 F 2 -input1.bam FBtr0080663 71 15 F 1 -input1.bam FBtr0080663 71 16 F 3 -input1.bam FBtr0080663 71 17 F 7 -input1.bam FBtr0080663 71 26 F 1 -input1.bam FBtr0080663 71 32 F 2 -input1.bam FBtr0080663 71 50 F 1 -input1.bam FBtr0080663 71 51 F 9 +input1.bam FBtr0080663 71 51 F 1 input1.bam FBtr0080663 71 71 F 0 -input1.bam FBtr0080664 71 1 F 16 +input1.bam FBtr0080664 71 1 F 6 input1.bam FBtr0080664 71 3 F 56 input1.bam FBtr0080664 71 4 F 4 input1.bam FBtr0080664 71 6 F 1 input1.bam FBtr0080664 71 7 F 1 input1.bam FBtr0080664 71 8 F 4 input1.bam FBtr0080664 71 9 F 1 -input1.bam FBtr0080664 71 11 F 3 -input1.bam FBtr0080664 71 12 F 3 +input1.bam FBtr0080664 71 12 F 1 input1.bam FBtr0080664 71 13 F 2 -input1.bam FBtr0080664 71 14 F 3 -input1.bam FBtr0080664 71 16 F 2 -input1.bam FBtr0080664 71 17 F 10 -input1.bam FBtr0080664 71 18 F 1 -input1.bam FBtr0080664 71 21 F 1 -input1.bam FBtr0080664 71 28 F 2 -input1.bam FBtr0080664 71 32 F 1 +input1.bam FBtr0080664 71 14 F 1 +input1.bam FBtr0080664 71 17 F 1 input1.bam FBtr0080664 71 33 F 1 -input1.bam FBtr0080664 71 34 F 1 -input1.bam FBtr0080664 71 35 F 1 input1.bam FBtr0080664 71 36 F 1 -input1.bam FBtr0080664 71 37 F 1 -input1.bam FBtr0080664 71 38 F 1 -input1.bam FBtr0080664 71 50 F 2 -input1.bam FBtr0080664 71 51 F 7 -input1.bam FBtr0080664 71 52 F 1 -input1.bam FBtr0080664 71 56 F 1 input1.bam FBtr0080664 71 71 F 0
--- a/test-data/input1_coverage.tab Wed Apr 10 06:38:33 2019 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,1603 +0,0 @@ -Dataset Chromosome Chrom_length Coordinate Polarity Coverage -input1.bam FBtr0070001 72 1 F 1 -input1.bam FBtr0070001 72 2 F 1 -input1.bam FBtr0070001 72 3 F 1 -input1.bam FBtr0070001 72 4 F 1 -input1.bam FBtr0070001 72 5 F 1 -input1.bam FBtr0070001 72 6 F 1 -input1.bam FBtr0070001 72 7 F 7 -input1.bam FBtr0070001 72 8 F 10 -input1.bam FBtr0070001 72 9 F 10 -input1.bam FBtr0070001 72 10 F 10 -input1.bam FBtr0070001 72 11 F 12 -input1.bam FBtr0070001 72 12 F 12 -input1.bam FBtr0070001 72 13 F 12 -input1.bam FBtr0070001 72 14 F 12 -input1.bam FBtr0070001 72 15 F 12 -input1.bam FBtr0070001 72 16 F 13 -input1.bam FBtr0070001 72 17 F 14 -input1.bam FBtr0070001 72 18 F 14 -input1.bam FBtr0070001 72 19 F 14 -input1.bam FBtr0070001 72 20 F 14 -input1.bam FBtr0070001 72 21 F 14 -input1.bam FBtr0070001 72 22 F 14 -input1.bam FBtr0070001 72 23 F 13 -input1.bam FBtr0070001 72 24 F 13 -input1.bam FBtr0070001 72 25 F 13 -input1.bam FBtr0070001 72 26 F 13 -input1.bam FBtr0070001 72 27 F 14 -input1.bam FBtr0070001 72 28 F 11 -input1.bam FBtr0070001 72 29 F 8 -input1.bam FBtr0070001 72 30 F 9 -input1.bam FBtr0070001 72 31 F 18 -input1.bam FBtr0070001 72 32 F 44 -input1.bam FBtr0070001 72 33 F 44 -input1.bam FBtr0070001 72 34 F 44 -input1.bam FBtr0070001 72 35 F 43 -input1.bam FBtr0070001 72 36 F 43 -input1.bam FBtr0070001 72 37 F 43 -input1.bam FBtr0070001 72 38 F 43 -input1.bam FBtr0070001 72 39 F 43 -input1.bam FBtr0070001 72 40 F 42 -input1.bam FBtr0070001 72 41 F 42 -input1.bam FBtr0070001 72 42 F 42 -input1.bam FBtr0070001 72 43 F 42 -input1.bam FBtr0070001 72 44 F 42 -input1.bam FBtr0070001 72 45 F 42 -input1.bam FBtr0070001 72 46 F 42 -input1.bam FBtr0070001 72 47 F 42 -input1.bam FBtr0070001 72 48 F 42 -input1.bam FBtr0070001 72 49 F 42 -input1.bam FBtr0070001 72 50 F 41 -input1.bam FBtr0070001 72 51 F 40 -input1.bam FBtr0070001 72 52 F 40 -input1.bam FBtr0070001 72 53 F 39 -input1.bam FBtr0070001 72 72 F 0 -input1.bam FBtr0070533 72 1 F 1 -input1.bam FBtr0070533 72 2 F 1 -input1.bam FBtr0070533 72 3 F 1 -input1.bam FBtr0070533 72 4 F 1 -input1.bam FBtr0070533 72 5 F 1 -input1.bam FBtr0070533 72 6 F 1 -input1.bam FBtr0070533 72 7 F 1 -input1.bam FBtr0070533 72 8 F 1 -input1.bam FBtr0070533 72 9 F 1 -input1.bam FBtr0070533 72 10 F 1 -input1.bam FBtr0070533 72 11 F 1 -input1.bam FBtr0070533 72 12 F 3 -input1.bam FBtr0070533 72 13 F 3 -input1.bam FBtr0070533 72 14 F 3 -input1.bam FBtr0070533 72 15 F 4 -input1.bam FBtr0070533 72 16 F 3 -input1.bam FBtr0070533 72 17 F 3 -input1.bam FBtr0070533 72 18 F 3 -input1.bam FBtr0070533 72 19 F 8 -input1.bam FBtr0070533 72 20 F 9 -input1.bam FBtr0070533 72 21 F 10 -input1.bam FBtr0070533 72 22 F 11 -input1.bam FBtr0070533 72 23 F 11 -input1.bam FBtr0070533 72 24 F 11 -input1.bam FBtr0070533 72 25 F 12 -input1.bam FBtr0070533 72 26 F 13 -input1.bam FBtr0070533 72 27 F 13 -input1.bam FBtr0070533 72 28 F 14 -input1.bam FBtr0070533 72 29 F 14 -input1.bam FBtr0070533 72 30 F 11 -input1.bam FBtr0070533 72 31 F 11 -input1.bam FBtr0070533 72 32 F 15 -input1.bam FBtr0070533 72 33 F 15 -input1.bam FBtr0070533 72 34 F 15 -input1.bam FBtr0070533 72 35 F 16 -input1.bam FBtr0070533 72 36 F 16 -input1.bam FBtr0070533 72 37 F 18 -input1.bam FBtr0070533 72 38 F 20 -input1.bam FBtr0070533 72 39 F 19 -input1.bam FBtr0070533 72 40 F 17 -input1.bam FBtr0070533 72 41 F 15 -input1.bam FBtr0070533 72 42 F 11 -input1.bam FBtr0070533 72 43 F 10 -input1.bam FBtr0070533 72 44 F 10 -input1.bam FBtr0070533 72 45 F 10 -input1.bam FBtr0070533 72 46 F 10 -input1.bam FBtr0070533 72 47 F 10 -input1.bam FBtr0070533 72 48 F 10 -input1.bam FBtr0070533 72 49 F 10 -input1.bam FBtr0070533 72 50 F 9 -input1.bam FBtr0070533 72 51 F 9 -input1.bam FBtr0070533 72 52 F 8 -input1.bam FBtr0070533 72 53 F 7 -input1.bam FBtr0070533 72 54 F 4 -input1.bam FBtr0070533 72 55 F 4 -input1.bam FBtr0070533 72 72 F 0 -input1.bam FBtr0070603 72 1 F 2 -input1.bam FBtr0070603 72 2 F 2 -input1.bam FBtr0070603 72 3 F 3 -input1.bam FBtr0070603 72 4 F 4 -input1.bam FBtr0070603 72 5 F 4 -input1.bam FBtr0070603 72 6 F 5 -input1.bam FBtr0070603 72 7 F 12 -input1.bam FBtr0070603 72 8 F 16 -input1.bam FBtr0070603 72 9 F 23 -input1.bam FBtr0070603 72 10 F 23 -input1.bam FBtr0070603 72 11 F 23 -input1.bam FBtr0070603 72 12 F 25 -input1.bam FBtr0070603 72 13 F 26 -input1.bam FBtr0070603 72 14 F 26 -input1.bam FBtr0070603 72 15 F 28 -input1.bam FBtr0070603 72 16 F 29 -input1.bam FBtr0070603 72 17 F 32 -input1.bam FBtr0070603 72 18 F 33 -input1.bam FBtr0070603 72 19 F 41 -input1.bam FBtr0070603 72 20 F 44 -input1.bam FBtr0070603 72 21 F 45 -input1.bam FBtr0070603 72 22 F 48 -input1.bam FBtr0070603 72 23 F 48 -input1.bam FBtr0070603 72 24 F 30 -input1.bam FBtr0070603 72 25 F 30 -input1.bam FBtr0070603 72 26 F 36 -input1.bam FBtr0070603 72 27 F 39 -input1.bam FBtr0070603 72 28 F 39 -input1.bam FBtr0070603 72 29 F 38 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FBtr0080664 71 14 F 94 -input1.bam FBtr0080664 71 15 F 94 -input1.bam FBtr0080664 71 16 F 95 -input1.bam FBtr0080664 71 17 F 100 -input1.bam FBtr0080664 71 18 F 98 -input1.bam FBtr0080664 71 19 F 97 -input1.bam FBtr0080664 71 20 F 97 -input1.bam FBtr0080664 71 21 F 97 -input1.bam FBtr0080664 71 22 F 97 -input1.bam FBtr0080664 71 23 F 93 -input1.bam FBtr0080664 71 24 F 88 -input1.bam FBtr0080664 71 25 F 88 -input1.bam FBtr0080664 71 26 F 82 -input1.bam FBtr0080664 71 27 F 47 -input1.bam FBtr0080664 71 28 F 33 -input1.bam FBtr0080664 71 29 F 23 -input1.bam FBtr0080664 71 30 F 23 -input1.bam FBtr0080664 71 31 F 20 -input1.bam FBtr0080664 71 32 F 13 -input1.bam FBtr0080664 71 33 F 6 -input1.bam FBtr0080664 71 34 F 7 -input1.bam FBtr0080664 71 35 F 8 -input1.bam FBtr0080664 71 36 F 7 -input1.bam FBtr0080664 71 37 F 8 -input1.bam FBtr0080664 71 38 F 9 -input1.bam FBtr0080664 71 39 F 9 -input1.bam FBtr0080664 71 40 F 9 -input1.bam FBtr0080664 71 41 F 9 -input1.bam FBtr0080664 71 42 F 9 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1
--- a/test-data/input1_input2_counts.tab Wed Apr 10 06:38:33 2019 -0400 +++ b/test-data/input1_input2_counts.tab Sun Apr 14 14:43:44 2019 -0400 @@ -1,617 +1,392 @@ Dataset Chromosome Chrom_length Coordinate Polarity Counts -input1.bam FBtr0070001 72 1 F 1 -input1.bam FBtr0070001 72 7 F 6 +input1.bam FBtr0070001 72 1 F 0 +input1.bam FBtr0070001 72 7 F 5 input1.bam FBtr0070001 72 8 F 3 input1.bam FBtr0070001 72 11 F 2 input1.bam FBtr0070001 72 16 F 1 input1.bam FBtr0070001 72 17 F 1 -input1.bam FBtr0070001 72 18 F 1 input1.bam FBtr0070001 72 27 F 2 input1.bam FBtr0070001 72 30 F 1 input1.bam FBtr0070001 72 31 F 11 input1.bam FBtr0070001 72 32 F 27 input1.bam FBtr0070001 72 34 F 1 input1.bam FBtr0070001 72 72 F 0 -input1.bam FBtr0070533 72 1 F 1 -input1.bam FBtr0070533 72 12 F 2 -input1.bam FBtr0070533 72 15 F 1 +input1.bam FBtr0070533 72 1 F 0 input1.bam FBtr0070533 72 19 F 5 input1.bam FBtr0070533 72 20 F 1 -input1.bam FBtr0070533 72 21 F 1 input1.bam FBtr0070533 72 22 F 1 -input1.bam FBtr0070533 72 25 F 1 -input1.bam FBtr0070533 72 26 F 1 input1.bam FBtr0070533 72 28 F 1 -input1.bam FBtr0070533 72 32 F 4 +input1.bam FBtr0070533 72 32 F 3 input1.bam FBtr0070533 72 35 F 1 input1.bam FBtr0070533 72 37 F 2 -input1.bam FBtr0070533 72 38 F 2 input1.bam FBtr0070533 72 72 F 0 -input1.bam FBtr0070603 72 1 F 2 +input1.bam FBtr0070603 72 1 F 0 input1.bam FBtr0070603 72 3 F 1 input1.bam FBtr0070603 72 4 F 1 -input1.bam FBtr0070603 72 6 F 1 -input1.bam FBtr0070603 72 7 F 7 -input1.bam FBtr0070603 72 8 F 4 -input1.bam FBtr0070603 72 9 F 7 -input1.bam FBtr0070603 72 12 F 2 +input1.bam FBtr0070603 72 12 F 1 input1.bam FBtr0070603 72 13 F 1 -input1.bam FBtr0070603 72 15 F 2 -input1.bam FBtr0070603 72 16 F 2 +input1.bam FBtr0070603 72 15 F 1 +input1.bam FBtr0070603 72 16 F 1 input1.bam FBtr0070603 72 17 F 3 -input1.bam FBtr0070603 72 18 F 1 -input1.bam FBtr0070603 72 19 F 9 -input1.bam FBtr0070603 72 20 F 3 +input1.bam FBtr0070603 72 19 F 8 +input1.bam FBtr0070603 72 20 F 2 input1.bam FBtr0070603 72 21 F 1 input1.bam FBtr0070603 72 22 F 3 -input1.bam FBtr0070603 72 24 F 2 +input1.bam FBtr0070603 72 24 F 1 input1.bam FBtr0070603 72 25 F 1 input1.bam FBtr0070603 72 26 F 6 input1.bam FBtr0070603 72 27 F 3 input1.bam FBtr0070603 72 32 F 1 -input1.bam FBtr0070603 72 34 F 3 -input1.bam FBtr0070603 72 38 F 1 +input1.bam FBtr0070603 72 34 F 2 input1.bam FBtr0070603 72 42 F 1 -input1.bam FBtr0070603 72 51 F 1 -input1.bam FBtr0070603 72 56 F 1 input1.bam FBtr0070603 72 72 F 0 -input1.bam FBtr0070604 72 1 F 1 +input1.bam FBtr0070604 72 1 F 0 input1.bam FBtr0070604 72 18 F 1 input1.bam FBtr0070604 72 22 F 1 -input1.bam FBtr0070604 72 30 F 2 input1.bam FBtr0070604 72 31 F 10 input1.bam FBtr0070604 72 32 F 24 -input1.bam FBtr0070604 72 57 F 1 input1.bam FBtr0070604 72 72 F 0 input1.bam FBtr0070911 73 1 F 0 input1.bam FBtr0070911 73 15 F 1 -input1.bam FBtr0070911 73 38 F 1 input1.bam FBtr0070911 73 73 F 0 input1.bam FBtr0078490 72 1 F 0 -input1.bam FBtr0078490 72 13 F 2 -input1.bam FBtr0078490 72 17 F 1 -input1.bam FBtr0078490 72 18 F 1 -input1.bam FBtr0078490 72 25 F 1 -input1.bam FBtr0078490 72 28 F 2 -input1.bam FBtr0078490 72 38 F 1 +input1.bam FBtr0078490 72 28 F 1 input1.bam FBtr0078490 72 72 F 0 -input1.bam FBtr0078580 72 1 F 1041 +input1.bam FBtr0078580 72 1 F 420 input1.bam FBtr0078580 72 3 F 3 input1.bam FBtr0078580 72 4 F 4 input1.bam FBtr0078580 72 5 F 5 -input1.bam FBtr0078580 72 6 F 4 +input1.bam FBtr0078580 72 6 F 2 input1.bam FBtr0078580 72 7 F 1 -input1.bam FBtr0078580 72 8 F 2 +input1.bam FBtr0078580 72 8 F 1 input1.bam FBtr0078580 72 11 F 1 -input1.bam FBtr0078580 72 12 F 13 -input1.bam FBtr0078580 72 14 F 7 -input1.bam FBtr0078580 72 15 F 1 -input1.bam FBtr0078580 72 16 F 4 -input1.bam FBtr0078580 72 17 F 1 +input1.bam FBtr0078580 72 12 F 3 +input1.bam FBtr0078580 72 16 F 3 input1.bam FBtr0078580 72 19 F 1 input1.bam FBtr0078580 72 20 F 2 -input1.bam FBtr0078580 72 21 F 5 -input1.bam FBtr0078580 72 24 F 3 +input1.bam FBtr0078580 72 21 F 4 input1.bam FBtr0078580 72 25 F 2 -input1.bam FBtr0078580 72 29 F 1 -input1.bam FBtr0078580 72 31 F 1 -input1.bam FBtr0078580 72 52 F 2 input1.bam FBtr0078580 72 72 F 0 input1.bam FBtr0078790 73 1 F 1 -input1.bam FBtr0078790 73 17 F 2 input1.bam FBtr0078790 73 33 F 1 -input1.bam FBtr0078790 73 42 F 4 +input1.bam FBtr0078790 73 42 F 2 input1.bam FBtr0078790 73 44 F 2 -input1.bam FBtr0078790 73 46 F 1 -input1.bam FBtr0078790 73 47 F 1 input1.bam FBtr0078790 73 52 F 1 -input1.bam FBtr0078790 73 69 R 1 input1.bam FBtr0078790 73 73 F 0 -input1.bam FBtr0079064 72 1 F 1 +input1.bam FBtr0079064 72 1 F 0 input1.bam FBtr0079064 72 3 F 1 -input1.bam FBtr0079064 72 33 F 1 -input1.bam FBtr0079064 72 52 F 1 input1.bam FBtr0079064 72 72 F 0 -input1.bam FBtr0079090 72 1 F 2 +input1.bam FBtr0079090 72 1 F 1 input1.bam FBtr0079090 72 26 F 1 -input1.bam FBtr0079090 72 33 F 1 -input1.bam FBtr0079090 72 53 F 1 input1.bam FBtr0079090 72 56 R 1 input1.bam FBtr0079090 72 72 F 0 input1.bam FBtr0079338 73 1 F 0 -input1.bam FBtr0079338 73 12 F 1 -input1.bam FBtr0079338 73 13 F 2 -input1.bam FBtr0079338 73 14 F 1 -input1.bam FBtr0079338 73 17 F 1 -input1.bam FBtr0079338 73 25 F 1 +input1.bam FBtr0079338 73 13 F 1 input1.bam FBtr0079338 73 42 F 8 input1.bam FBtr0079338 73 43 F 1 -input1.bam FBtr0079338 73 46 F 1 input1.bam FBtr0079338 73 73 F 0 -input1.bam FBtr0079528 71 1 F 19 +input1.bam FBtr0079528 71 1 F 10 input1.bam FBtr0079528 71 3 F 55 input1.bam FBtr0079528 71 4 F 2 -input1.bam FBtr0079528 71 8 F 4 +input1.bam FBtr0079528 71 8 F 3 input1.bam FBtr0079528 71 10 F 1 -input1.bam FBtr0079528 71 11 F 2 -input1.bam FBtr0079528 71 13 F 1 -input1.bam FBtr0079528 71 14 F 4 -input1.bam FBtr0079528 71 16 F 1 -input1.bam FBtr0079528 71 17 F 4 -input1.bam FBtr0079528 71 18 F 4 -input1.bam FBtr0079528 71 28 F 1 -input1.bam FBtr0079528 71 35 F 1 +input1.bam FBtr0079528 71 11 F 1 +input1.bam FBtr0079528 71 14 F 2 +input1.bam FBtr0079528 71 18 F 3 input1.bam FBtr0079528 71 36 F 1 -input1.bam FBtr0079528 71 37 F 1 -input1.bam FBtr0079528 71 51 F 5 input1.bam FBtr0079528 71 71 F 0 -input1.bam FBtr0079596 73 1 F 13 -input1.bam FBtr0079596 73 3 F 13 +input1.bam FBtr0079596 73 1 F 3 +input1.bam FBtr0079596 73 3 F 11 input1.bam FBtr0079596 73 4 F 31 -input1.bam FBtr0079596 73 5 F 2 -input1.bam FBtr0079596 73 6 F 11 -input1.bam FBtr0079596 73 8 F 9 -input1.bam FBtr0079596 73 9 F 12 -input1.bam FBtr0079596 73 10 F 3 -input1.bam FBtr0079596 73 11 F 19 -input1.bam FBtr0079596 73 12 F 1 -input1.bam FBtr0079596 73 13 F 20 -input1.bam FBtr0079596 73 14 F 6 -input1.bam FBtr0079596 73 15 F 1 -input1.bam FBtr0079596 73 16 F 3 -input1.bam FBtr0079596 73 17 F 2 -input1.bam FBtr0079596 73 18 F 1 -input1.bam FBtr0079596 73 19 F 1 -input1.bam FBtr0079596 73 53 F 2 +input1.bam FBtr0079596 73 5 F 1 +input1.bam FBtr0079596 73 6 F 4 +input1.bam FBtr0079596 73 13 F 1 +input1.bam FBtr0079596 73 53 F 1 input1.bam FBtr0079596 73 54 F 2 input1.bam FBtr0079596 73 73 F 0 input1.bam FBtr0079677 72 1 F 1 input1.bam FBtr0079677 72 5 F 1 input1.bam FBtr0079677 72 52 F 1 -input1.bam FBtr0079677 72 53 F 1 input1.bam FBtr0079677 72 72 F 0 -input1.bam FBtr0079690 72 1 F 1 -input1.bam FBtr0079690 72 22 F 1 +input1.bam FBtr0079690 72 1 F 0 input1.bam FBtr0079690 72 27 F 1 -input1.bam FBtr0079690 72 33 F 2 input1.bam FBtr0079690 72 72 F 0 -input1.bam FBtr0079692 73 1 F 3 -input1.bam FBtr0079692 73 18 F 1 -input1.bam FBtr0079692 73 25 F 1 +input1.bam FBtr0079692 73 1 F 2 input1.bam FBtr0079692 73 32 F 1 input1.bam FBtr0079692 73 73 F 0 -input1.bam FBtr0079693 72 1 F 5 +input1.bam FBtr0079693 72 1 F 1 input1.bam FBtr0079693 72 25 F 1 input1.bam FBtr0079693 72 72 F 0 -input1.bam FBtr0079694 72 1 F 5 +input1.bam FBtr0079694 72 1 F 3 input1.bam FBtr0079694 72 18 F 1 -input1.bam FBtr0079694 72 52 F 1 input1.bam FBtr0079694 72 72 F 0 -input1.bam FBtr0079702 72 1 F 1 -input1.bam FBtr0079702 72 19 F 2 -input1.bam FBtr0079702 72 56 F 1 +input1.bam FBtr0079702 72 1 F 0 input1.bam FBtr0079702 72 72 F 0 -input1.bam FBtr0079728 72 1 F 2 +input1.bam FBtr0079728 72 1 F 0 input1.bam FBtr0079728 72 8 F 1 input1.bam FBtr0079728 72 19 F 1 -input1.bam FBtr0079728 72 33 F 3 -input1.bam FBtr0079728 72 56 F 1 input1.bam FBtr0079728 72 72 F 0 -input1.bam FBtr0079729 72 1 F 1 +input1.bam FBtr0079729 72 1 F 0 input1.bam FBtr0079729 72 13 F 1 -input1.bam FBtr0079729 72 52 F 1 -input1.bam FBtr0079729 72 57 F 1 input1.bam FBtr0079729 72 72 F 0 -input1.bam FBtr0079752 72 1 F 2 +input1.bam FBtr0079752 72 1 F 1 input1.bam FBtr0079752 72 7 F 1 -input1.bam FBtr0079752 72 12 F 1 -input1.bam FBtr0079752 72 33 F 2 input1.bam FBtr0079752 72 52 F 2 input1.bam FBtr0079752 72 72 F 0 input1.bam FBtr0079820 74 1 F 0 input1.bam FBtr0079820 74 45 F 1 -input1.bam FBtr0079820 74 46 F 2 -input1.bam FBtr0079820 74 48 F 1 input1.bam FBtr0079820 74 49 F 1 input1.bam FBtr0079820 74 51 F 1 -input1.bam FBtr0079820 74 54 F 4 -input1.bam FBtr0079820 74 55 F 1 -input1.bam FBtr0079820 74 56 F 2 +input1.bam FBtr0079820 74 54 F 2 +input1.bam FBtr0079820 74 56 F 1 input1.bam FBtr0079820 74 74 F 0 -input1.bam FBtr0080609 72 1 F 13 +input1.bam FBtr0080609 72 1 F 3 input1.bam FBtr0080609 72 3 F 2 input1.bam FBtr0080609 72 4 F 10 input1.bam FBtr0080609 72 5 F 2 -input1.bam FBtr0080609 72 7 F 19 -input1.bam FBtr0080609 72 8 F 4 -input1.bam FBtr0080609 72 9 F 3 input1.bam FBtr0080609 72 12 F 1 input1.bam FBtr0080609 72 15 F 1 input1.bam FBtr0080609 72 16 F 1 -input1.bam FBtr0080609 72 17 F 2 +input1.bam FBtr0080609 72 17 F 1 input1.bam FBtr0080609 72 19 F 1 input1.bam FBtr0080609 72 20 F 1 input1.bam FBtr0080609 72 42 F 1 -input1.bam FBtr0080609 72 51 F 1 -input1.bam FBtr0080609 72 52 F 1 input1.bam FBtr0080609 72 72 F 0 input1.bam FBtr0080644 72 1 F 1 -input1.bam FBtr0080644 72 4 F 2 -input1.bam FBtr0080644 72 7 F 1 -input1.bam FBtr0080644 72 12 F 2 +input1.bam FBtr0080644 72 4 F 1 input1.bam FBtr0080644 72 72 F 0 -input1.bam FBtr0080646 72 1 F 1 +input1.bam FBtr0080646 72 1 F 0 input1.bam FBtr0080646 72 6 F 1 input1.bam FBtr0080646 72 7 F 1 input1.bam FBtr0080646 72 72 F 0 -input1.bam FBtr0080647 72 1 F 3 -input1.bam FBtr0080647 72 3 F 1 -input1.bam FBtr0080647 72 6 F 2 +input1.bam FBtr0080647 72 1 F 0 +input1.bam FBtr0080647 72 6 F 1 input1.bam FBtr0080647 72 8 F 1 -input1.bam FBtr0080647 72 11 F 2 -input1.bam FBtr0080647 72 12 F 1 input1.bam FBtr0080647 72 72 F 0 input1.bam FBtr0080660 72 1 F 0 input1.bam FBtr0080660 72 4 F 4 -input1.bam FBtr0080660 72 7 F 3 +input1.bam FBtr0080660 72 7 F 2 input1.bam FBtr0080660 72 72 F 0 -input1.bam FBtr0080663 71 1 F 22 +input1.bam FBtr0080663 71 1 F 6 input1.bam FBtr0080663 71 3 F 56 input1.bam FBtr0080663 71 4 F 4 -input1.bam FBtr0080663 71 7 F 1 -input1.bam FBtr0080663 71 8 F 4 -input1.bam FBtr0080663 71 12 F 2 +input1.bam FBtr0080663 71 8 F 3 input1.bam FBtr0080663 71 14 F 2 -input1.bam FBtr0080663 71 15 F 1 -input1.bam FBtr0080663 71 16 F 3 -input1.bam FBtr0080663 71 17 F 7 -input1.bam FBtr0080663 71 26 F 1 -input1.bam FBtr0080663 71 32 F 2 -input1.bam FBtr0080663 71 50 F 1 -input1.bam FBtr0080663 71 51 F 9 +input1.bam FBtr0080663 71 51 F 1 input1.bam FBtr0080663 71 71 F 0 -input1.bam FBtr0080664 71 1 F 16 +input1.bam FBtr0080664 71 1 F 6 input1.bam FBtr0080664 71 3 F 56 input1.bam FBtr0080664 71 4 F 4 input1.bam FBtr0080664 71 6 F 1 input1.bam FBtr0080664 71 7 F 1 input1.bam FBtr0080664 71 8 F 4 input1.bam FBtr0080664 71 9 F 1 -input1.bam FBtr0080664 71 11 F 3 -input1.bam FBtr0080664 71 12 F 3 +input1.bam FBtr0080664 71 12 F 1 input1.bam FBtr0080664 71 13 F 2 -input1.bam FBtr0080664 71 14 F 3 -input1.bam FBtr0080664 71 16 F 2 -input1.bam FBtr0080664 71 17 F 10 -input1.bam FBtr0080664 71 18 F 1 -input1.bam FBtr0080664 71 21 F 1 -input1.bam FBtr0080664 71 28 F 2 -input1.bam FBtr0080664 71 32 F 1 +input1.bam FBtr0080664 71 14 F 1 +input1.bam FBtr0080664 71 17 F 1 input1.bam FBtr0080664 71 33 F 1 -input1.bam FBtr0080664 71 34 F 1 -input1.bam FBtr0080664 71 35 F 1 input1.bam FBtr0080664 71 36 F 1 -input1.bam FBtr0080664 71 37 F 1 -input1.bam FBtr0080664 71 38 F 1 -input1.bam FBtr0080664 71 50 F 2 -input1.bam FBtr0080664 71 51 F 7 -input1.bam FBtr0080664 71 52 F 1 -input1.bam FBtr0080664 71 56 F 1 input1.bam FBtr0080664 71 71 F 0 -input2.bam FBtr0070001 72 1 F 1 -input2.bam FBtr0070001 72 12 F 1 +input2.bam FBtr0070001 72 1 F 0 input2.bam FBtr0070001 72 13 F 1 -input2.bam FBtr0070001 72 18 F 1 input2.bam FBtr0070001 72 19 F 1 input2.bam FBtr0070001 72 28 F 1 input2.bam FBtr0070001 72 32 F 3 -input2.bam FBtr0070001 72 53 F 2 -input2.bam FBtr0070001 72 56 F 2 -input2.bam FBtr0070001 72 57 F 1 -input2.bam FBtr0070001 72 58 F 10 +input2.bam FBtr0070001 72 53 F 1 input2.bam FBtr0070001 72 72 F 0 input2.bam FBtr0070533 72 1 F 0 -input2.bam FBtr0070533 72 15 F 1 -input2.bam FBtr0070533 72 16 F 2 -input2.bam FBtr0070533 72 17 F 2 +input2.bam FBtr0070533 72 16 F 1 input2.bam FBtr0070533 72 19 F 1 input2.bam FBtr0070533 72 20 F 1 -input2.bam FBtr0070533 72 21 F 4 -input2.bam FBtr0070533 72 22 F 20 +input2.bam FBtr0070533 72 21 F 2 +input2.bam FBtr0070533 72 22 F 17 input2.bam FBtr0070533 72 23 F 1 -input2.bam FBtr0070533 72 24 F 6 -input2.bam FBtr0070533 72 25 F 5 -input2.bam FBtr0070533 72 27 F 1 -input2.bam FBtr0070533 72 39 F 1 input2.bam FBtr0070533 72 72 F 0 input2.bam FBtr0070603 72 1 F 0 -input2.bam FBtr0070603 72 12 F 2 -input2.bam FBtr0070603 72 17 F 6 -input2.bam FBtr0070603 72 19 F 3 -input2.bam FBtr0070603 72 20 F 2 -input2.bam FBtr0070603 72 21 F 1 -input2.bam FBtr0070603 72 22 F 21 -input2.bam FBtr0070603 72 25 F 1 -input2.bam FBtr0070603 72 27 F 2 +input2.bam FBtr0070603 72 17 F 4 +input2.bam FBtr0070603 72 19 F 2 +input2.bam FBtr0070603 72 20 F 1 +input2.bam FBtr0070603 72 22 F 11 +input2.bam FBtr0070603 72 27 F 1 input2.bam FBtr0070603 72 28 F 2 input2.bam FBtr0070603 72 30 F 2 -input2.bam FBtr0070603 72 31 F 2 -input2.bam FBtr0070603 72 34 F 4 +input2.bam FBtr0070603 72 31 F 1 +input2.bam FBtr0070603 72 34 F 3 input2.bam FBtr0070603 72 35 F 2 -input2.bam FBtr0070603 72 37 F 2 -input2.bam FBtr0070603 72 38 F 2 -input2.bam FBtr0070603 72 41 F 3 +input2.bam FBtr0070603 72 37 F 1 +input2.bam FBtr0070603 72 41 F 1 input2.bam FBtr0070603 72 51 F 2 input2.bam FBtr0070603 72 53 F 2 input2.bam FBtr0070603 72 72 F 0 input2.bam FBtr0070604 72 1 F 0 -input2.bam FBtr0070604 72 3 F 1 input2.bam FBtr0070604 72 31 F 1 input2.bam FBtr0070604 72 32 F 5 -input2.bam FBtr0070604 72 40 F 1 input2.bam FBtr0070604 72 53 F 3 -input2.bam FBtr0070604 72 56 F 4 -input2.bam FBtr0070604 72 57 F 18 -input2.bam FBtr0070604 72 58 F 22 input2.bam FBtr0070604 72 72 F 0 input2.bam FBtr0070911 73 1 F 0 -input2.bam FBtr0070911 73 11 F 1 input2.bam FBtr0070911 73 32 F 1 -input2.bam FBtr0070911 73 48 F 1 input2.bam FBtr0070911 73 73 F 0 input2.bam FBtr0078490 72 1 F 3 -input2.bam FBtr0078490 72 13 F 2 -input2.bam FBtr0078490 72 14 F 4 +input2.bam FBtr0078490 72 13 F 1 input2.bam FBtr0078490 72 20 F 1 input2.bam FBtr0078490 72 30 F 1 -input2.bam FBtr0078490 72 38 F 2 -input2.bam FBtr0078490 72 41 F 1 input2.bam FBtr0078490 72 72 F 0 -input2.bam FBtr0078580 72 1 F 146 +input2.bam FBtr0078580 72 1 F 3 input2.bam FBtr0078580 72 11 F 1 input2.bam FBtr0078580 72 13 F 1 input2.bam FBtr0078580 72 15 F 3 -input2.bam FBtr0078580 72 16 F 5 +input2.bam FBtr0078580 72 16 F 4 input2.bam FBtr0078580 72 17 F 2 input2.bam FBtr0078580 72 18 F 9 -input2.bam FBtr0078580 72 19 F 20 -input2.bam FBtr0078580 72 20 F 21 -input2.bam FBtr0078580 72 21 F 55 -input2.bam FBtr0078580 72 22 F 1 -input2.bam FBtr0078580 72 23 F 11 -input2.bam FBtr0078580 72 24 F 24 -input2.bam FBtr0078580 72 25 F 20 -input2.bam FBtr0078580 72 26 F 19 -input2.bam FBtr0078580 72 27 F 9 +input2.bam FBtr0078580 72 19 F 19 +input2.bam FBtr0078580 72 20 F 20 +input2.bam FBtr0078580 72 21 F 54 +input2.bam FBtr0078580 72 23 F 1 +input2.bam FBtr0078580 72 25 F 1 +input2.bam FBtr0078580 72 26 F 1 input2.bam FBtr0078580 72 28 F 2 -input2.bam FBtr0078580 72 29 F 9 -input2.bam FBtr0078580 72 30 F 2 -input2.bam FBtr0078580 72 31 F 1 -input2.bam FBtr0078580 72 40 F 5 -input2.bam FBtr0078580 72 43 F 1 -input2.bam FBtr0078580 72 52 F 3 +input2.bam FBtr0078580 72 29 F 3 +input2.bam FBtr0078580 72 40 F 3 input2.bam FBtr0078580 72 72 F 0 input2.bam FBtr0078790 73 1 F 0 -input2.bam FBtr0078790 73 17 F 1 -input2.bam FBtr0078790 73 41 F 2 input2.bam FBtr0078790 73 42 F 1 -input2.bam FBtr0078790 73 46 F 1 input2.bam FBtr0078790 73 51 F 1 input2.bam FBtr0078790 73 52 F 2 -input2.bam FBtr0078790 73 54 F 2 input2.bam FBtr0078790 73 73 F 0 -input2.bam FBtr0079064 72 1 F 3 -input2.bam FBtr0079064 72 52 F 2 +input2.bam FBtr0079064 72 1 F 0 input2.bam FBtr0079064 72 72 F 0 -input2.bam FBtr0079090 72 1 F 1 +input2.bam FBtr0079090 72 1 F 0 input2.bam FBtr0079090 72 16 F 1 -input2.bam FBtr0079090 72 20 F 1 -input2.bam FBtr0079090 72 33 F 1 -input2.bam FBtr0079090 72 35 F 1 -input2.bam FBtr0079090 72 52 F 2 input2.bam FBtr0079090 72 72 F 0 input2.bam FBtr0079338 73 1 F 0 -input2.bam FBtr0079338 73 12 F 2 -input2.bam FBtr0079338 73 13 F 4 -input2.bam FBtr0079338 73 14 F 6 -input2.bam FBtr0079338 73 16 F 4 -input2.bam FBtr0079338 73 17 F 2 -input2.bam FBtr0079338 73 18 F 1 -input2.bam FBtr0079338 73 39 F 1 +input2.bam FBtr0079338 73 13 F 2 input2.bam FBtr0079338 73 41 F 2 input2.bam FBtr0079338 73 42 F 1 input2.bam FBtr0079338 73 73 F 0 -input2.bam FBtr0079528 71 1 F 2 +input2.bam FBtr0079528 71 1 F 0 input2.bam FBtr0079528 71 3 F 1 input2.bam FBtr0079528 71 10 F 4 input2.bam FBtr0079528 71 11 F 3 input2.bam FBtr0079528 71 13 F 4 -input2.bam FBtr0079528 71 14 F 17 -input2.bam FBtr0079528 71 15 F 19 -input2.bam FBtr0079528 71 16 F 10 -input2.bam FBtr0079528 71 17 F 12 -input2.bam FBtr0079528 71 18 F 13 -input2.bam FBtr0079528 71 19 F 6 -input2.bam FBtr0079528 71 20 F 7 -input2.bam FBtr0079528 71 21 F 13 -input2.bam FBtr0079528 71 22 F 5 -input2.bam FBtr0079528 71 23 F 1 +input2.bam FBtr0079528 71 14 F 12 +input2.bam FBtr0079528 71 15 F 3 +input2.bam FBtr0079528 71 16 F 2 +input2.bam FBtr0079528 71 17 F 2 +input2.bam FBtr0079528 71 18 F 5 +input2.bam FBtr0079528 71 19 F 2 +input2.bam FBtr0079528 71 20 F 1 input2.bam FBtr0079528 71 30 F 1 -input2.bam FBtr0079528 71 31 F 2 -input2.bam FBtr0079528 71 32 F 39 -input2.bam FBtr0079528 71 33 F 4 -input2.bam FBtr0079528 71 34 F 27 -input2.bam FBtr0079528 71 35 F 122 -input2.bam FBtr0079528 71 36 F 6 -input2.bam FBtr0079528 71 37 F 21 -input2.bam FBtr0079528 71 38 F 12 +input2.bam FBtr0079528 71 31 F 1 +input2.bam FBtr0079528 71 32 F 8 +input2.bam FBtr0079528 71 34 F 4 +input2.bam FBtr0079528 71 36 F 2 +input2.bam FBtr0079528 71 37 F 9 +input2.bam FBtr0079528 71 38 F 3 input2.bam FBtr0079528 71 43 F 1 -input2.bam FBtr0079528 71 46 F 1 -input2.bam FBtr0079528 71 50 F 2 -input2.bam FBtr0079528 71 51 F 4 -input2.bam FBtr0079528 71 53 F 1 -input2.bam FBtr0079528 71 56 F 2 -input2.bam FBtr0079528 71 57 F 3 input2.bam FBtr0079528 71 71 F 0 -input2.bam FBtr0079596 73 1 F 22 -input2.bam FBtr0079596 73 2 F 1 -input2.bam FBtr0079596 73 3 F 8 -input2.bam FBtr0079596 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FBtr0080663 71 57 F 3 input2.bam FBtr0080663 71 71 F 0 input2.bam FBtr0080664 71 1 F 1 input2.bam FBtr0080664 71 3 F 2 input2.bam FBtr0080664 71 10 F 1 input2.bam FBtr0080664 71 11 F 2 input2.bam FBtr0080664 71 12 F 3 -input2.bam FBtr0080664 71 13 F 11 -input2.bam FBtr0080664 71 14 F 11 -input2.bam FBtr0080664 71 15 F 17 -input2.bam FBtr0080664 71 16 F 15 -input2.bam FBtr0080664 71 17 F 13 -input2.bam FBtr0080664 71 18 F 10 -input2.bam FBtr0080664 71 19 F 8 -input2.bam FBtr0080664 71 20 F 1 -input2.bam FBtr0080664 71 21 F 15 -input2.bam FBtr0080664 71 22 F 6 -input2.bam FBtr0080664 71 24 F 1 +input2.bam FBtr0080664 71 13 F 10 +input2.bam FBtr0080664 71 14 F 3 +input2.bam FBtr0080664 71 15 F 2 +input2.bam FBtr0080664 71 16 F 4 +input2.bam FBtr0080664 71 18 F 5 +input2.bam FBtr0080664 71 19 F 5 +input2.bam FBtr0080664 71 22 F 1 input2.bam FBtr0080664 71 30 F 1 -input2.bam FBtr0080664 71 31 F 3 -input2.bam FBtr0080664 71 32 F 39 -input2.bam FBtr0080664 71 33 F 4 -input2.bam FBtr0080664 71 34 F 37 -input2.bam FBtr0080664 71 35 F 135 -input2.bam FBtr0080664 71 36 F 8 -input2.bam FBtr0080664 71 37 F 25 -input2.bam FBtr0080664 71 38 F 8 -input2.bam FBtr0080664 71 39 F 1 +input2.bam FBtr0080664 71 31 F 2 +input2.bam FBtr0080664 71 32 F 8 +input2.bam FBtr0080664 71 33 F 1 +input2.bam FBtr0080664 71 34 F 4 +input2.bam FBtr0080664 71 36 F 4 +input2.bam FBtr0080664 71 37 F 5 +input2.bam FBtr0080664 71 38 F 2 input2.bam FBtr0080664 71 42 F 1 -input2.bam FBtr0080664 71 47 F 1 -input2.bam FBtr0080664 71 50 F 2 -input2.bam FBtr0080664 71 52 F 1 input2.bam FBtr0080664 71 53 F 1 -input2.bam FBtr0080664 71 56 F 1 -input2.bam FBtr0080664 71 57 F 2 input2.bam FBtr0080664 71 62 R 1 input2.bam FBtr0080664 71 71 F 0 input2.bam FBtr0080664 71 71 R 1
--- a/test-data/input1_input2_coverage.tab Wed Apr 10 06:38:33 2019 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,3109 +0,0 @@ -Dataset Chromosome Chrom_length Coordinate Polarity Coverage -input1.bam FBtr0070001 72 1 F 1 -input1.bam FBtr0070001 72 2 F 1 -input1.bam FBtr0070001 72 3 F 1 -input1.bam FBtr0070001 72 4 F 1 -input1.bam FBtr0070001 72 5 F 1 -input1.bam FBtr0070001 72 6 F 1 -input1.bam FBtr0070001 72 7 F 7 -input1.bam FBtr0070001 72 8 F 10 -input1.bam FBtr0070001 72 9 F 10 -input1.bam FBtr0070001 72 10 F 10 -input1.bam FBtr0070001 72 11 F 12 -input1.bam FBtr0070001 72 12 F 12 -input1.bam FBtr0070001 72 13 F 12 -input1.bam FBtr0070001 72 14 F 12 -input1.bam FBtr0070001 72 15 F 12 -input1.bam FBtr0070001 72 16 F 13 -input1.bam FBtr0070001 72 17 F 14 -input1.bam FBtr0070001 72 18 F 14 -input1.bam FBtr0070001 72 19 F 14 -input1.bam FBtr0070001 72 20 F 14 -input1.bam FBtr0070001 72 21 F 14 -input1.bam FBtr0070001 72 22 F 14 -input1.bam FBtr0070001 72 23 F 13 -input1.bam FBtr0070001 72 24 F 13 -input1.bam FBtr0070001 72 25 F 13 -input1.bam FBtr0070001 72 26 F 13 -input1.bam FBtr0070001 72 27 F 14 -input1.bam FBtr0070001 72 28 F 11 -input1.bam FBtr0070001 72 29 F 8 -input1.bam FBtr0070001 72 30 F 9 -input1.bam FBtr0070001 72 31 F 18 -input1.bam FBtr0070001 72 32 F 44 -input1.bam FBtr0070001 72 33 F 44 -input1.bam FBtr0070001 72 34 F 44 -input1.bam FBtr0070001 72 35 F 43 -input1.bam FBtr0070001 72 36 F 43 -input1.bam FBtr0070001 72 37 F 43 -input1.bam FBtr0070001 72 38 F 43 -input1.bam FBtr0070001 72 39 F 43 -input1.bam FBtr0070001 72 40 F 42 -input1.bam FBtr0070001 72 41 F 42 -input1.bam FBtr0070001 72 42 F 42 -input1.bam FBtr0070001 72 43 F 42 -input1.bam FBtr0070001 72 44 F 42 -input1.bam FBtr0070001 72 45 F 42 -input1.bam FBtr0070001 72 46 F 42 -input1.bam FBtr0070001 72 47 F 42 -input1.bam FBtr0070001 72 48 F 42 -input1.bam FBtr0070001 72 49 F 42 -input1.bam FBtr0070001 72 50 F 41 -input1.bam FBtr0070001 72 51 F 40 -input1.bam FBtr0070001 72 52 F 40 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FBtr0070533 72 28 F 14 -input1.bam FBtr0070533 72 29 F 14 -input1.bam FBtr0070533 72 30 F 11 -input1.bam FBtr0070533 72 31 F 11 -input1.bam FBtr0070533 72 32 F 15 -input1.bam FBtr0070533 72 33 F 15 -input1.bam FBtr0070533 72 34 F 15 -input1.bam FBtr0070533 72 35 F 16 -input1.bam FBtr0070533 72 36 F 16 -input1.bam FBtr0070533 72 37 F 18 -input1.bam FBtr0070533 72 38 F 20 -input1.bam FBtr0070533 72 39 F 19 -input1.bam FBtr0070533 72 40 F 17 -input1.bam FBtr0070533 72 41 F 15 -input1.bam FBtr0070533 72 42 F 11 -input1.bam FBtr0070533 72 43 F 10 -input1.bam FBtr0070533 72 44 F 10 -input1.bam FBtr0070533 72 45 F 10 -input1.bam FBtr0070533 72 46 F 10 -input1.bam FBtr0070533 72 47 F 10 -input1.bam FBtr0070533 72 48 F 10 -input1.bam FBtr0070533 72 49 F 10 -input1.bam FBtr0070533 72 50 F 9 -input1.bam FBtr0070533 72 51 F 9 -input1.bam FBtr0070533 72 52 F 8 -input1.bam FBtr0070533 72 53 F 7 -input1.bam FBtr0070533 72 54 F 4 -input1.bam FBtr0070533 72 55 F 4 -input1.bam FBtr0070533 72 72 F 0 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FBtr0070604 72 18 F 1 -input1.bam FBtr0070604 72 19 F 1 -input1.bam FBtr0070604 72 20 F 1 -input1.bam FBtr0070604 72 21 F 1 -input1.bam FBtr0070604 72 22 F 2 -input1.bam FBtr0070604 72 23 F 2 -input1.bam FBtr0070604 72 24 F 2 -input1.bam FBtr0070604 72 25 F 2 -input1.bam FBtr0070604 72 26 F 2 -input1.bam FBtr0070604 72 27 F 2 -input1.bam FBtr0070604 72 28 F 2 -input1.bam FBtr0070604 72 29 F 2 -input1.bam FBtr0070604 72 30 F 4 -input1.bam FBtr0070604 72 31 F 14 -input1.bam FBtr0070604 72 32 F 38 -input1.bam FBtr0070604 72 33 F 38 -input1.bam FBtr0070604 72 34 F 38 -input1.bam FBtr0070604 72 35 F 38 -input1.bam FBtr0070604 72 36 F 38 -input1.bam FBtr0070604 72 37 F 38 -input1.bam FBtr0070604 72 38 F 38 -input1.bam FBtr0070604 72 39 F 38 -input1.bam FBtr0070604 72 40 F 38 -input1.bam FBtr0070604 72 41 F 36 -input1.bam FBtr0070604 72 42 F 36 -input1.bam FBtr0070604 72 43 F 36 -input1.bam FBtr0070604 72 44 F 36 -input1.bam FBtr0070604 72 45 F 36 -input1.bam FBtr0070604 72 46 F 35 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--- a/test-data/input1_input2_mean.tab Wed Apr 10 06:38:33 2019 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,617 +0,0 @@ -Dataset Chromosome Chrom_length Coordinate Polarity Mean -input1.bam FBtr0070001 72 1 F 17.0 -input1.bam FBtr0070001 72 7 F 20.3 -input1.bam FBtr0070001 72 8 F 21.3 -input1.bam FBtr0070001 72 11 F 20.5 -input1.bam FBtr0070001 72 16 F 19.0 -input1.bam FBtr0070001 72 17 F 23.0 -input1.bam FBtr0070001 72 18 F 16.0 -input1.bam FBtr0070001 72 27 F 23.5 -input1.bam FBtr0070001 72 30 F 23.0 -input1.bam FBtr0070001 72 31 F 23.0 -input1.bam FBtr0070001 72 32 F 22.0 -input1.bam FBtr0070001 72 34 F 20.0 -input1.bam FBtr0070001 72 72 F 0 -input1.bam FBtr0070533 72 1 F 15.0 -input1.bam FBtr0070533 72 12 F 18.0 -input1.bam FBtr0070533 72 15 F 15.0 -input1.bam FBtr0070533 72 19 F 21.8 -input1.bam FBtr0070533 72 20 F 23.0 -input1.bam FBtr0070533 72 21 F 18.0 -input1.bam FBtr0070533 72 22 F 20.0 -input1.bam FBtr0070533 72 25 F 17.0 -input1.bam FBtr0070533 72 26 F 16.0 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19.0 -input2.bam FBtr0079596 73 8 F 17.0 -input2.bam FBtr0079596 73 9 F 20.0 -input2.bam FBtr0079596 73 11 F 22.0 -input2.bam FBtr0079596 73 12 F 20.9 -input2.bam FBtr0079596 73 13 F 19.9 -input2.bam FBtr0079596 73 14 F 19.0 -input2.bam FBtr0079596 73 15 F 18.1 -input2.bam FBtr0079596 73 16 F 17.1 -input2.bam FBtr0079596 73 17 F 16.1 -input2.bam FBtr0079596 73 18 F 15.1 -input2.bam FBtr0079596 73 19 F 15.0 -input2.bam FBtr0079596 73 22 F 19.5 -input2.bam FBtr0079596 73 42 F 19.0 -input2.bam FBtr0079596 73 53 F 18.7 -input2.bam FBtr0079596 73 59 R 21.0 -input2.bam FBtr0079596 73 73 F 0 -input2.bam FBtr0079677 72 1 F 15.0 -input2.bam FBtr0079677 72 15 F 20.0 -input2.bam FBtr0079677 72 24 F 17.0 -input2.bam FBtr0079677 72 43 F 19.0 -input2.bam FBtr0079677 72 52 F 17.0 -input2.bam FBtr0079677 72 54 F 16.0 -input2.bam FBtr0079677 72 72 F 0 -input2.bam FBtr0079690 72 1 F 15.0 -input2.bam FBtr0079690 72 15 F 20.0 -input2.bam FBtr0079690 72 17 F 20.0 -input2.bam FBtr0079690 72 19 F 21.0 -input2.bam FBtr0079690 72 21 F 16.0 -input2.bam FBtr0079690 72 72 F 0 -input2.bam FBtr0079692 73 1 F 0 -input2.bam FBtr0079692 73 4 F 18.0 -input2.bam FBtr0079692 73 7 F 15.0 -input2.bam FBtr0079692 73 12 F 22.0 -input2.bam FBtr0079692 73 15 F 21.0 -input2.bam FBtr0079692 73 73 F 0 -input2.bam FBtr0079693 72 1 F 15.0 -input2.bam FBtr0079693 72 17 F 19.0 -input2.bam FBtr0079693 72 20 F 15.0 -input2.bam FBtr0079693 72 45 F 16.0 -input2.bam FBtr0079693 72 52 F 20.0 -input2.bam FBtr0079693 72 54 F 16.0 -input2.bam FBtr0079693 72 72 F 0 -input2.bam FBtr0079694 72 1 F 15.0 -input2.bam FBtr0079694 72 16 F 19.0 -input2.bam FBtr0079694 72 17 F 18.0 -input2.bam FBtr0079694 72 18 F 17.0 -input2.bam FBtr0079694 72 52 F 18.0 -input2.bam FBtr0079694 72 72 F 0 -input2.bam FBtr0079702 72 1 F 15.0 -input2.bam FBtr0079702 72 52 F 17.5 -input2.bam FBtr0079702 72 72 F 0 -input2.bam FBtr0079728 72 1 F 15.0 -input2.bam FBtr0079728 72 20 F 16.0 -input2.bam FBtr0079728 72 52 F 17.5 -input2.bam FBtr0079728 72 72 F 0 -input2.bam FBtr0079729 72 1 F 15.0 -input2.bam FBtr0079729 72 19 F 16.0 -input2.bam FBtr0079729 72 33 F 17.0 -input2.bam FBtr0079729 72 53 F 16.0 -input2.bam FBtr0079729 72 72 F 0 -input2.bam FBtr0079752 72 1 F 0 -input2.bam FBtr0079752 72 49 F 24.0 -input2.bam FBtr0079752 72 52 F 17.0 -input2.bam FBtr0079752 72 72 F 0 -input2.bam FBtr0079820 74 1 F 0 -input2.bam FBtr0079820 74 39 F 16.0 -input2.bam FBtr0079820 74 52 F 21.0 -input2.bam FBtr0079820 74 53 F 20.0 -input2.bam FBtr0079820 74 54 F 19.3 -input2.bam FBtr0079820 74 55 F 18.6 -input2.bam FBtr0079820 74 56 F 16.5 -input2.bam FBtr0079820 74 57 F 16.8 -input2.bam FBtr0079820 74 58 F 16.0 -input2.bam FBtr0079820 74 59 F 15.5 -input2.bam FBtr0079820 74 60 F 15.0 -input2.bam FBtr0079820 74 74 F 0 -input2.bam FBtr0080609 72 1 F 0 -input2.bam FBtr0080609 72 20 F 19.0 -input2.bam FBtr0080609 72 21 F 21.0 -input2.bam FBtr0080609 72 22 F 23.0 -input2.bam FBtr0080609 72 33 F 22.0 -input2.bam FBtr0080609 72 39 F 17.0 -input2.bam FBtr0080609 72 52 F 18.0 -input2.bam FBtr0080609 72 53 F 19.0 -input2.bam FBtr0080609 72 72 F 0 -input2.bam FBtr0080644 72 1 F 0 -input2.bam FBtr0080644 72 57 F 15.0 -input2.bam FBtr0080644 72 58 F 15.0 -input2.bam FBtr0080644 72 72 F 0 -input2.bam FBtr0080646 72 1 F 0 -input2.bam FBtr0080646 72 51 F 21.0 -input2.bam FBtr0080646 72 57 F 15.5 -input2.bam FBtr0080646 72 58 F 15.0 -input2.bam FBtr0080646 72 72 F 0 -input2.bam FBtr0080647 72 1 F 18.0 -input2.bam FBtr0080647 72 57 F 15.5 -input2.bam FBtr0080647 72 58 F 15.0 -input2.bam FBtr0080647 72 72 F 0 -input2.bam FBtr0080660 72 1 F 0 -input2.bam FBtr0080660 72 58 F 15.0 -input2.bam FBtr0080660 72 72 F 0 -input2.bam FBtr0080663 71 1 F 22.0 -input2.bam FBtr0080663 71 11 F 21.0 -input2.bam FBtr0080663 71 12 F 20.5 -input2.bam FBtr0080663 71 13 F 19.8 -input2.bam FBtr0080663 71 14 F 18.6 -input2.bam FBtr0080663 71 15 F 17.9 -input2.bam FBtr0080663 71 16 F 17.0 -input2.bam FBtr0080663 71 17 F 16.0 -input2.bam FBtr0080663 71 18 F 18.2 -input2.bam FBtr0080663 71 19 F 17.7 -input2.bam FBtr0080663 71 20 F 16.7 -input2.bam FBtr0080663 71 21 F 15.5 -input2.bam FBtr0080663 71 22 F 15.3 -input2.bam FBtr0080663 71 31 F 17.0 -input2.bam FBtr0080663 71 50 F 15.5 -input2.bam FBtr0080663 71 51 F 19.0 -input2.bam FBtr0080663 71 52 F 15.0 -input2.bam FBtr0080663 71 57 F 15.0 -input2.bam FBtr0080663 71 71 F 0 -input2.bam FBtr0080664 71 1 F 22.0 -input2.bam FBtr0080664 71 3 F 23.0 -input2.bam FBtr0080664 71 10 F 23.0 -input2.bam FBtr0080664 71 11 F 22.0 -input2.bam FBtr0080664 71 12 F 21.0 -input2.bam FBtr0080664 71 13 F 19.7 -input2.bam FBtr0080664 71 14 F 18.3 -input2.bam FBtr0080664 71 15 F 18.1 -input2.bam FBtr0080664 71 16 F 17.3 -input2.bam FBtr0080664 71 17 F 15.8 -input2.bam FBtr0080664 71 18 F 18.9 -input2.bam FBtr0080664 71 19 F 19.0 -input2.bam FBtr0080664 71 20 F 16.0 -input2.bam FBtr0080664 71 21 F 15.3 -input2.bam FBtr0080664 71 22 F 16.2 -input2.bam FBtr0080664 71 24 F 15.0 -input2.bam FBtr0080664 71 30 F 21.0 -input2.bam FBtr0080664 71 31 F 18.7 -input2.bam FBtr0080664 71 32 F 18.3 -input2.bam FBtr0080664 71 33 F 17.5 -input2.bam FBtr0080664 71 34 F 16.1 -input2.bam FBtr0080664 71 35 F 15.2 -input2.bam FBtr0080664 71 36 F 19.9 -input2.bam FBtr0080664 71 37 F 17.7 -input2.bam FBtr0080664 71 38 F 18.1 -input2.bam FBtr0080664 71 39 F 17.0 -input2.bam FBtr0080664 71 42 F 20.0 -input2.bam FBtr0080664 71 47 F 15.0 -input2.bam FBtr0080664 71 50 F 15.5 -input2.bam FBtr0080664 71 52 F 16.0 -input2.bam FBtr0080664 71 53 F 19.0 -input2.bam FBtr0080664 71 56 F 16.0 -input2.bam FBtr0080664 71 57 F 15.0 -input2.bam FBtr0080664 71 62 R 23.0 -input2.bam FBtr0080664 71 71 F 0 -input2.bam FBtr0080664 71 71 R 22.0
--- a/test-data/input1_input2_norm_1_2_counts.tab Wed Apr 10 06:38:33 2019 -0400 +++ b/test-data/input1_input2_norm_1_2_counts.tab Sun Apr 14 14:43:44 2019 -0400 @@ -1,617 +1,392 @@ Dataset Chromosome Chrom_length Coordinate Polarity Counts -input1.bam FBtr0070001 72 1 F 1 -input1.bam FBtr0070001 72 7 F 6 +input1.bam FBtr0070001 72 1 F 0 +input1.bam FBtr0070001 72 7 F 5 input1.bam FBtr0070001 72 8 F 3 input1.bam FBtr0070001 72 11 F 2 input1.bam FBtr0070001 72 16 F 1 input1.bam FBtr0070001 72 17 F 1 -input1.bam FBtr0070001 72 18 F 1 input1.bam FBtr0070001 72 27 F 2 input1.bam FBtr0070001 72 30 F 1 input1.bam FBtr0070001 72 31 F 11 input1.bam FBtr0070001 72 32 F 27 input1.bam FBtr0070001 72 34 F 1 input1.bam FBtr0070001 72 72 F 0 -input1.bam FBtr0070533 72 1 F 1 -input1.bam FBtr0070533 72 12 F 2 -input1.bam FBtr0070533 72 15 F 1 +input1.bam FBtr0070533 72 1 F 0 input1.bam FBtr0070533 72 19 F 5 input1.bam FBtr0070533 72 20 F 1 -input1.bam FBtr0070533 72 21 F 1 input1.bam FBtr0070533 72 22 F 1 -input1.bam FBtr0070533 72 25 F 1 -input1.bam FBtr0070533 72 26 F 1 input1.bam FBtr0070533 72 28 F 1 -input1.bam FBtr0070533 72 32 F 4 +input1.bam FBtr0070533 72 32 F 3 input1.bam FBtr0070533 72 35 F 1 input1.bam FBtr0070533 72 37 F 2 -input1.bam FBtr0070533 72 38 F 2 input1.bam FBtr0070533 72 72 F 0 -input1.bam FBtr0070603 72 1 F 2 +input1.bam FBtr0070603 72 1 F 0 input1.bam FBtr0070603 72 3 F 1 input1.bam FBtr0070603 72 4 F 1 -input1.bam FBtr0070603 72 6 F 1 -input1.bam FBtr0070603 72 7 F 7 -input1.bam FBtr0070603 72 8 F 4 -input1.bam FBtr0070603 72 9 F 7 -input1.bam FBtr0070603 72 12 F 2 +input1.bam FBtr0070603 72 12 F 1 input1.bam FBtr0070603 72 13 F 1 -input1.bam FBtr0070603 72 15 F 2 -input1.bam FBtr0070603 72 16 F 2 +input1.bam FBtr0070603 72 15 F 1 +input1.bam FBtr0070603 72 16 F 1 input1.bam FBtr0070603 72 17 F 3 -input1.bam FBtr0070603 72 18 F 1 -input1.bam FBtr0070603 72 19 F 9 -input1.bam FBtr0070603 72 20 F 3 +input1.bam FBtr0070603 72 19 F 8 +input1.bam FBtr0070603 72 20 F 2 input1.bam FBtr0070603 72 21 F 1 input1.bam FBtr0070603 72 22 F 3 -input1.bam FBtr0070603 72 24 F 2 +input1.bam FBtr0070603 72 24 F 1 input1.bam FBtr0070603 72 25 F 1 input1.bam FBtr0070603 72 26 F 6 input1.bam FBtr0070603 72 27 F 3 input1.bam FBtr0070603 72 32 F 1 -input1.bam FBtr0070603 72 34 F 3 -input1.bam FBtr0070603 72 38 F 1 +input1.bam FBtr0070603 72 34 F 2 input1.bam FBtr0070603 72 42 F 1 -input1.bam FBtr0070603 72 51 F 1 -input1.bam FBtr0070603 72 56 F 1 input1.bam FBtr0070603 72 72 F 0 -input1.bam FBtr0070604 72 1 F 1 +input1.bam FBtr0070604 72 1 F 0 input1.bam FBtr0070604 72 18 F 1 input1.bam FBtr0070604 72 22 F 1 -input1.bam FBtr0070604 72 30 F 2 input1.bam FBtr0070604 72 31 F 10 input1.bam FBtr0070604 72 32 F 24 -input1.bam FBtr0070604 72 57 F 1 input1.bam FBtr0070604 72 72 F 0 input1.bam FBtr0070911 73 1 F 0 input1.bam FBtr0070911 73 15 F 1 -input1.bam FBtr0070911 73 38 F 1 input1.bam FBtr0070911 73 73 F 0 input1.bam FBtr0078490 72 1 F 0 -input1.bam FBtr0078490 72 13 F 2 -input1.bam FBtr0078490 72 17 F 1 -input1.bam FBtr0078490 72 18 F 1 -input1.bam FBtr0078490 72 25 F 1 -input1.bam FBtr0078490 72 28 F 2 -input1.bam FBtr0078490 72 38 F 1 +input1.bam FBtr0078490 72 28 F 1 input1.bam FBtr0078490 72 72 F 0 -input1.bam FBtr0078580 72 1 F 1041 +input1.bam FBtr0078580 72 1 F 420 input1.bam FBtr0078580 72 3 F 3 input1.bam FBtr0078580 72 4 F 4 input1.bam FBtr0078580 72 5 F 5 -input1.bam FBtr0078580 72 6 F 4 +input1.bam FBtr0078580 72 6 F 2 input1.bam FBtr0078580 72 7 F 1 -input1.bam FBtr0078580 72 8 F 2 +input1.bam FBtr0078580 72 8 F 1 input1.bam FBtr0078580 72 11 F 1 -input1.bam FBtr0078580 72 12 F 13 -input1.bam FBtr0078580 72 14 F 7 -input1.bam FBtr0078580 72 15 F 1 -input1.bam FBtr0078580 72 16 F 4 -input1.bam FBtr0078580 72 17 F 1 +input1.bam FBtr0078580 72 12 F 3 +input1.bam FBtr0078580 72 16 F 3 input1.bam FBtr0078580 72 19 F 1 input1.bam FBtr0078580 72 20 F 2 -input1.bam FBtr0078580 72 21 F 5 -input1.bam FBtr0078580 72 24 F 3 +input1.bam FBtr0078580 72 21 F 4 input1.bam FBtr0078580 72 25 F 2 -input1.bam FBtr0078580 72 29 F 1 -input1.bam FBtr0078580 72 31 F 1 -input1.bam FBtr0078580 72 52 F 2 input1.bam FBtr0078580 72 72 F 0 input1.bam FBtr0078790 73 1 F 1 -input1.bam FBtr0078790 73 17 F 2 input1.bam FBtr0078790 73 33 F 1 -input1.bam FBtr0078790 73 42 F 4 +input1.bam FBtr0078790 73 42 F 2 input1.bam FBtr0078790 73 44 F 2 -input1.bam FBtr0078790 73 46 F 1 -input1.bam FBtr0078790 73 47 F 1 input1.bam FBtr0078790 73 52 F 1 -input1.bam FBtr0078790 73 69 R 1 input1.bam FBtr0078790 73 73 F 0 -input1.bam FBtr0079064 72 1 F 1 +input1.bam FBtr0079064 72 1 F 0 input1.bam FBtr0079064 72 3 F 1 -input1.bam FBtr0079064 72 33 F 1 -input1.bam FBtr0079064 72 52 F 1 input1.bam FBtr0079064 72 72 F 0 -input1.bam FBtr0079090 72 1 F 2 +input1.bam FBtr0079090 72 1 F 1 input1.bam FBtr0079090 72 26 F 1 -input1.bam FBtr0079090 72 33 F 1 -input1.bam FBtr0079090 72 53 F 1 input1.bam FBtr0079090 72 56 R 1 input1.bam FBtr0079090 72 72 F 0 input1.bam FBtr0079338 73 1 F 0 -input1.bam FBtr0079338 73 12 F 1 -input1.bam FBtr0079338 73 13 F 2 -input1.bam FBtr0079338 73 14 F 1 -input1.bam FBtr0079338 73 17 F 1 -input1.bam FBtr0079338 73 25 F 1 +input1.bam FBtr0079338 73 13 F 1 input1.bam FBtr0079338 73 42 F 8 input1.bam FBtr0079338 73 43 F 1 -input1.bam FBtr0079338 73 46 F 1 input1.bam FBtr0079338 73 73 F 0 -input1.bam FBtr0079528 71 1 F 19 +input1.bam FBtr0079528 71 1 F 10 input1.bam FBtr0079528 71 3 F 55 input1.bam FBtr0079528 71 4 F 2 -input1.bam FBtr0079528 71 8 F 4 +input1.bam FBtr0079528 71 8 F 3 input1.bam FBtr0079528 71 10 F 1 -input1.bam FBtr0079528 71 11 F 2 -input1.bam FBtr0079528 71 13 F 1 -input1.bam FBtr0079528 71 14 F 4 -input1.bam FBtr0079528 71 16 F 1 -input1.bam FBtr0079528 71 17 F 4 -input1.bam FBtr0079528 71 18 F 4 -input1.bam FBtr0079528 71 28 F 1 -input1.bam FBtr0079528 71 35 F 1 +input1.bam FBtr0079528 71 11 F 1 +input1.bam FBtr0079528 71 14 F 2 +input1.bam FBtr0079528 71 18 F 3 input1.bam FBtr0079528 71 36 F 1 -input1.bam FBtr0079528 71 37 F 1 -input1.bam FBtr0079528 71 51 F 5 input1.bam FBtr0079528 71 71 F 0 -input1.bam FBtr0079596 73 1 F 13 -input1.bam FBtr0079596 73 3 F 13 +input1.bam FBtr0079596 73 1 F 3 +input1.bam FBtr0079596 73 3 F 11 input1.bam FBtr0079596 73 4 F 31 -input1.bam FBtr0079596 73 5 F 2 -input1.bam FBtr0079596 73 6 F 11 -input1.bam FBtr0079596 73 8 F 9 -input1.bam FBtr0079596 73 9 F 12 -input1.bam FBtr0079596 73 10 F 3 -input1.bam FBtr0079596 73 11 F 19 -input1.bam FBtr0079596 73 12 F 1 -input1.bam FBtr0079596 73 13 F 20 -input1.bam FBtr0079596 73 14 F 6 -input1.bam FBtr0079596 73 15 F 1 -input1.bam FBtr0079596 73 16 F 3 -input1.bam FBtr0079596 73 17 F 2 -input1.bam FBtr0079596 73 18 F 1 -input1.bam FBtr0079596 73 19 F 1 -input1.bam FBtr0079596 73 53 F 2 +input1.bam FBtr0079596 73 5 F 1 +input1.bam FBtr0079596 73 6 F 4 +input1.bam FBtr0079596 73 13 F 1 +input1.bam FBtr0079596 73 53 F 1 input1.bam FBtr0079596 73 54 F 2 input1.bam FBtr0079596 73 73 F 0 input1.bam FBtr0079677 72 1 F 1 input1.bam FBtr0079677 72 5 F 1 input1.bam FBtr0079677 72 52 F 1 -input1.bam FBtr0079677 72 53 F 1 input1.bam FBtr0079677 72 72 F 0 -input1.bam FBtr0079690 72 1 F 1 -input1.bam FBtr0079690 72 22 F 1 +input1.bam FBtr0079690 72 1 F 0 input1.bam FBtr0079690 72 27 F 1 -input1.bam FBtr0079690 72 33 F 2 input1.bam FBtr0079690 72 72 F 0 -input1.bam FBtr0079692 73 1 F 3 -input1.bam FBtr0079692 73 18 F 1 -input1.bam FBtr0079692 73 25 F 1 +input1.bam FBtr0079692 73 1 F 2 input1.bam FBtr0079692 73 32 F 1 input1.bam FBtr0079692 73 73 F 0 -input1.bam FBtr0079693 72 1 F 5 +input1.bam FBtr0079693 72 1 F 1 input1.bam FBtr0079693 72 25 F 1 input1.bam FBtr0079693 72 72 F 0 -input1.bam FBtr0079694 72 1 F 5 +input1.bam FBtr0079694 72 1 F 3 input1.bam FBtr0079694 72 18 F 1 -input1.bam FBtr0079694 72 52 F 1 input1.bam FBtr0079694 72 72 F 0 -input1.bam FBtr0079702 72 1 F 1 -input1.bam FBtr0079702 72 19 F 2 -input1.bam FBtr0079702 72 56 F 1 +input1.bam FBtr0079702 72 1 F 0 input1.bam FBtr0079702 72 72 F 0 -input1.bam FBtr0079728 72 1 F 2 +input1.bam FBtr0079728 72 1 F 0 input1.bam FBtr0079728 72 8 F 1 input1.bam FBtr0079728 72 19 F 1 -input1.bam FBtr0079728 72 33 F 3 -input1.bam FBtr0079728 72 56 F 1 input1.bam FBtr0079728 72 72 F 0 -input1.bam FBtr0079729 72 1 F 1 +input1.bam FBtr0079729 72 1 F 0 input1.bam FBtr0079729 72 13 F 1 -input1.bam FBtr0079729 72 52 F 1 -input1.bam FBtr0079729 72 57 F 1 input1.bam FBtr0079729 72 72 F 0 -input1.bam FBtr0079752 72 1 F 2 +input1.bam FBtr0079752 72 1 F 1 input1.bam FBtr0079752 72 7 F 1 -input1.bam FBtr0079752 72 12 F 1 -input1.bam FBtr0079752 72 33 F 2 input1.bam FBtr0079752 72 52 F 2 input1.bam FBtr0079752 72 72 F 0 input1.bam FBtr0079820 74 1 F 0 input1.bam FBtr0079820 74 45 F 1 -input1.bam FBtr0079820 74 46 F 2 -input1.bam FBtr0079820 74 48 F 1 input1.bam FBtr0079820 74 49 F 1 input1.bam FBtr0079820 74 51 F 1 -input1.bam FBtr0079820 74 54 F 4 -input1.bam FBtr0079820 74 55 F 1 -input1.bam FBtr0079820 74 56 F 2 +input1.bam 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--- a/test-data/input1_input2_norm_1_2_coverage.tab Wed Apr 10 06:38:33 2019 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,3109 +0,0 @@ -Dataset Chromosome Chrom_length Coordinate Polarity Coverage -input1.bam FBtr0070001 72 1 F 1 -input1.bam FBtr0070001 72 2 F 1 -input1.bam FBtr0070001 72 3 F 1 -input1.bam FBtr0070001 72 4 F 1 -input1.bam FBtr0070001 72 5 F 1 -input1.bam FBtr0070001 72 6 F 1 -input1.bam FBtr0070001 72 7 F 7 -input1.bam FBtr0070001 72 8 F 10 -input1.bam FBtr0070001 72 9 F 10 -input1.bam FBtr0070001 72 10 F 10 -input1.bam FBtr0070001 72 11 F 12 -input1.bam FBtr0070001 72 12 F 12 -input1.bam FBtr0070001 72 13 F 12 -input1.bam FBtr0070001 72 14 F 12 -input1.bam FBtr0070001 72 15 F 12 -input1.bam FBtr0070001 72 16 F 13 -input1.bam FBtr0070001 72 17 F 14 -input1.bam FBtr0070001 72 18 F 14 -input1.bam FBtr0070001 72 19 F 14 -input1.bam FBtr0070001 72 20 F 14 -input1.bam FBtr0070001 72 21 F 14 -input1.bam FBtr0070001 72 22 F 14 -input1.bam FBtr0070001 72 23 F 13 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-input2.bam FBtr0080644 72 67 F 8 -input2.bam FBtr0080644 72 68 F 8 -input2.bam FBtr0080644 72 69 F 8 -input2.bam FBtr0080644 72 70 F 8 -input2.bam FBtr0080644 72 71 F 8 -input2.bam FBtr0080644 72 72 F 7 -input2.bam FBtr0080646 72 1 F 0 -input2.bam FBtr0080646 72 51 F 1 -input2.bam FBtr0080646 72 52 F 1 -input2.bam FBtr0080646 72 53 F 1 -input2.bam FBtr0080646 72 54 F 1 -input2.bam FBtr0080646 72 55 F 1 -input2.bam FBtr0080646 72 56 F 1 -input2.bam FBtr0080646 72 57 F 3 -input2.bam FBtr0080646 72 58 F 12 -input2.bam FBtr0080646 72 59 F 12 -input2.bam FBtr0080646 72 60 F 12 -input2.bam FBtr0080646 72 61 F 12 -input2.bam FBtr0080646 72 62 F 12 -input2.bam FBtr0080646 72 63 F 12 -input2.bam FBtr0080646 72 64 F 12 -input2.bam FBtr0080646 72 65 F 12 -input2.bam FBtr0080646 72 66 F 12 -input2.bam FBtr0080646 72 67 F 12 -input2.bam FBtr0080646 72 68 F 12 -input2.bam FBtr0080646 72 69 F 12 -input2.bam FBtr0080646 72 70 F 12 -input2.bam FBtr0080646 72 71 F 12 -input2.bam FBtr0080646 72 72 F 10 -input2.bam FBtr0080647 72 1 F 1 -input2.bam FBtr0080647 72 2 F 1 -input2.bam FBtr0080647 72 3 F 1 -input2.bam FBtr0080647 72 4 F 1 -input2.bam FBtr0080647 72 5 F 1 -input2.bam FBtr0080647 72 6 F 1 -input2.bam FBtr0080647 72 7 F 1 -input2.bam FBtr0080647 72 8 F 1 -input2.bam FBtr0080647 72 9 F 1 -input2.bam FBtr0080647 72 10 F 1 -input2.bam FBtr0080647 72 11 F 1 -input2.bam FBtr0080647 72 12 F 1 -input2.bam FBtr0080647 72 13 F 1 -input2.bam FBtr0080647 72 14 F 1 -input2.bam FBtr0080647 72 15 F 1 -input2.bam FBtr0080647 72 16 F 1 -input2.bam FBtr0080647 72 17 F 1 -input2.bam FBtr0080647 72 18 F 1 -input2.bam FBtr0080647 72 57 F 4 -input2.bam FBtr0080647 72 58 F 11 -input2.bam FBtr0080647 72 59 F 11 -input2.bam FBtr0080647 72 60 F 11 -input2.bam FBtr0080647 72 61 F 11 -input2.bam FBtr0080647 72 62 F 11 -input2.bam FBtr0080647 72 63 F 11 -input2.bam FBtr0080647 72 64 F 11 -input2.bam FBtr0080647 72 65 F 11 -input2.bam FBtr0080647 72 66 F 11 -input2.bam FBtr0080647 72 67 F 11 -input2.bam FBtr0080647 72 68 F 11 -input2.bam FBtr0080647 72 69 F 11 -input2.bam FBtr0080647 72 70 F 11 -input2.bam FBtr0080647 72 71 F 11 -input2.bam FBtr0080647 72 72 F 9 -input2.bam FBtr0080660 72 1 F 0 -input2.bam FBtr0080660 72 58 F 11 -input2.bam FBtr0080660 72 59 F 11 -input2.bam FBtr0080660 72 60 F 11 -input2.bam FBtr0080660 72 61 F 11 -input2.bam FBtr0080660 72 62 F 11 -input2.bam FBtr0080660 72 63 F 11 -input2.bam FBtr0080660 72 64 F 11 -input2.bam FBtr0080660 72 65 F 11 -input2.bam FBtr0080660 72 66 F 11 -input2.bam FBtr0080660 72 67 F 11 -input2.bam FBtr0080660 72 68 F 11 -input2.bam FBtr0080660 72 69 F 11 -input2.bam FBtr0080660 72 70 F 11 -input2.bam FBtr0080660 72 71 F 11 -input2.bam FBtr0080660 72 72 F 11 -input2.bam FBtr0080663 71 1 F 2 -input2.bam FBtr0080663 71 2 F 2 -input2.bam FBtr0080663 71 3 F 2 -input2.bam FBtr0080663 71 4 F 2 -input2.bam FBtr0080663 71 5 F 2 -input2.bam FBtr0080663 71 6 F 2 -input2.bam FBtr0080663 71 7 F 2 -input2.bam FBtr0080663 71 8 F 2 -input2.bam FBtr0080663 71 9 F 2 -input2.bam FBtr0080663 71 10 F 2 -input2.bam FBtr0080663 71 11 F 3 -input2.bam FBtr0080663 71 12 F 7 -input2.bam FBtr0080663 71 13 F 11 -input2.bam FBtr0080663 71 14 F 33 -input2.bam FBtr0080663 71 15 F 47 -input2.bam FBtr0080663 71 16 F 52 -input2.bam FBtr0080663 71 17 F 64 -input2.bam FBtr0080663 71 18 F 69 -input2.bam FBtr0080663 71 19 F 75 -input2.bam FBtr0080663 71 20 F 81 -input2.bam FBtr0080663 71 21 F 94 -input2.bam FBtr0080663 71 22 F 97 -input2.bam FBtr0080663 71 23 F 95 -input2.bam FBtr0080663 71 24 F 95 -input2.bam FBtr0080663 71 25 F 95 -input2.bam FBtr0080663 71 26 F 95 -input2.bam FBtr0080663 71 27 F 95 -input2.bam FBtr0080663 71 28 F 95 -input2.bam FBtr0080663 71 29 F 95 -input2.bam FBtr0080663 71 30 F 95 -input2.bam FBtr0080663 71 31 F 96 -input2.bam FBtr0080663 71 32 F 62 -input2.bam FBtr0080663 71 33 F 41 -input2.bam FBtr0080663 71 34 F 40 -input2.bam FBtr0080663 71 35 F 34 -input2.bam FBtr0080663 71 36 F 12 -input2.bam FBtr0080663 71 37 F 6 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FBtr0080663 71 69 F 4 -input2.bam FBtr0080663 71 70 F 3 -input2.bam FBtr0080663 71 71 F 3 -input2.bam FBtr0080664 71 1 F 1 -input2.bam FBtr0080664 71 2 F 1 -input2.bam FBtr0080664 71 3 F 3 -input2.bam FBtr0080664 71 4 F 3 -input2.bam FBtr0080664 71 5 F 3 -input2.bam FBtr0080664 71 6 F 3 -input2.bam FBtr0080664 71 7 F 3 -input2.bam FBtr0080664 71 8 F 3 -input2.bam FBtr0080664 71 9 F 3 -input2.bam FBtr0080664 71 10 F 4 -input2.bam FBtr0080664 71 11 F 6 -input2.bam FBtr0080664 71 12 F 9 -input2.bam FBtr0080664 71 13 F 20 -input2.bam FBtr0080664 71 14 F 31 -input2.bam FBtr0080664 71 15 F 48 -input2.bam FBtr0080664 71 16 F 63 -input2.bam FBtr0080664 71 17 F 76 -input2.bam FBtr0080664 71 18 F 86 -input2.bam FBtr0080664 71 19 F 94 -input2.bam FBtr0080664 71 20 F 95 -input2.bam FBtr0080664 71 21 F 110 -input2.bam FBtr0080664 71 22 F 116 -input2.bam FBtr0080664 71 23 F 114 -input2.bam FBtr0080664 71 24 F 115 -input2.bam FBtr0080664 71 25 F 115 -input2.bam FBtr0080664 71 26 F 115 -input2.bam FBtr0080664 71 27 F 115 -input2.bam FBtr0080664 71 28 F 115 -input2.bam FBtr0080664 71 29 F 113 -input2.bam FBtr0080664 71 30 F 113 -input2.bam FBtr0080664 71 31 F 117 -input2.bam FBtr0080664 71 32 F 127 -input2.bam FBtr0080664 71 33 F 97 -input2.bam FBtr0080664 71 34 F 134 -input2.bam FBtr0080664 71 35 F 265 -input2.bam FBtr0080664 71 36 F 249 -input2.bam FBtr0080664 71 37 F 266 -input2.bam FBtr0080664 71 38 F 268 -input2.bam FBtr0080664 71 39 F 263 -input2.bam FBtr0080664 71 40 F 263 -input2.bam FBtr0080664 71 41 F 262 -input2.bam FBtr0080664 71 42 F 262 -input2.bam FBtr0080664 71 43 F 260 -input2.bam FBtr0080664 71 44 F 263 -input2.bam FBtr0080664 71 45 F 263 -input2.bam FBtr0080664 71 46 F 263 -input2.bam FBtr0080664 71 47 F 264 -input2.bam FBtr0080664 71 48 F 264 -input2.bam FBtr0080664 71 49 F 254 -input2.bam FBtr0080664 71 50 F 72 -input2.bam FBtr0080664 71 51 F 63 -input2.bam FBtr0080664 71 52 F 61 -input2.bam FBtr0080664 71 53 F 31 -input2.bam FBtr0080664 71 54 F 30 -input2.bam FBtr0080664 71 55 F 21 -input2.bam FBtr0080664 71 56 F 16 -input2.bam FBtr0080664 71 57 F 18 -input2.bam FBtr0080664 71 58 F 18 -input2.bam FBtr0080664 71 59 F 18 -input2.bam FBtr0080664 71 60 F 17 -input2.bam FBtr0080664 71 61 F 16 -input2.bam FBtr0080664 71 62 F 12 -input2.bam FBtr0080664 71 62 R 12 -input2.bam FBtr0080664 71 63 F 8 -input2.bam FBtr0080664 71 64 F 8 -input2.bam FBtr0080664 71 65 F 7 -input2.bam FBtr0080664 71 66 F 6 -input2.bam FBtr0080664 71 67 F 6 -input2.bam FBtr0080664 71 68 F 5 -input2.bam FBtr0080664 71 69 F 5 -input2.bam FBtr0080664 71 70 F 5 -input2.bam FBtr0080664 71 71 F 5 -input2.bam FBtr0080664 71 71 R 5
--- a/test-data/input1_input2_size.tab Wed Apr 10 06:38:33 2019 -0400 +++ b/test-data/input1_input2_size.tab Sun Apr 14 14:43:44 2019 -0400 @@ -1,1045 +1,694 @@ Dataset Chromosome Polarity Size Counts Strandness z-score -input1.bam FBtr0070001 F 16 2 1.0 -0.476603123819 -input1.bam FBtr0070001 F 17 1 1.0 -0.586588460085 -input1.bam FBtr0070001 F 18 0 1.0 -0.696573796351 -input1.bam FBtr0070001 F 19 1 1.0 -0.586588460085 -input1.bam FBtr0070001 F 20 4 1.0 -0.256632451287 -input1.bam FBtr0070001 F 21 4 1.0 -0.256632451287 -input1.bam FBtr0070001 F 22 29 1.0 2.49300095536 -input1.bam FBtr0070001 F 23 15 1.0 0.953206247639 -input1.bam FBtr0070001 F 24 1 1.0 -0.586588460085 -input1.bam FBtr0070001 R 16 0 1.0 -0.476603123819 -input1.bam FBtr0070001 R 17 0 1.0 -0.586588460085 -input1.bam FBtr0070001 R 18 0 1.0 -0.696573796351 -input1.bam FBtr0070001 R 19 0 1.0 -0.586588460085 -input1.bam FBtr0070001 R 20 0 1.0 -0.256632451287 -input1.bam FBtr0070001 R 21 0 1.0 -0.256632451287 -input1.bam FBtr0070001 R 22 0 1.0 2.49300095536 -input1.bam FBtr0070001 R 23 0 1.0 0.953206247639 -input1.bam FBtr0070001 R 24 0 1.0 -0.586588460085 -input1.bam FBtr0070533 F 15 2 1.0 -0.114707866935 -input1.bam FBtr0070533 F 16 1 1.0 -0.745601135079 -input1.bam FBtr0070533 F 17 1 1.0 -0.745601135079 -input1.bam FBtr0070533 F 18 6 1.0 2.40886520564 -input1.bam FBtr0070533 F 19 3 1.0 0.516185401209 -input1.bam FBtr0070533 F 20 2 1.0 -0.114707866935 -input1.bam FBtr0070533 F 21 2 1.0 -0.114707866935 -input1.bam FBtr0070533 F 22 4 1.0 1.14707866935 -input1.bam FBtr0070533 F 23 2 1.0 -0.114707866935 -input1.bam FBtr0070533 F 24 0 1.0 -1.37649440322 -input1.bam FBtr0070533 F 25 1 1.0 -0.745601135079 -input1.bam FBtr0070533 R 15 0 1.0 -0.114707866935 -input1.bam FBtr0070533 R 16 0 1.0 -0.745601135079 -input1.bam FBtr0070533 R 17 0 1.0 -0.745601135079 -input1.bam FBtr0070533 R 18 0 1.0 2.40886520564 -input1.bam FBtr0070533 R 19 0 1.0 0.516185401209 -input1.bam FBtr0070533 R 20 0 1.0 -0.114707866935 -input1.bam FBtr0070533 R 21 0 1.0 -0.114707866935 -input1.bam FBtr0070533 R 22 0 1.0 1.14707866935 -input1.bam FBtr0070533 R 23 0 1.0 -0.114707866935 -input1.bam FBtr0070533 R 24 0 1.0 -1.37649440322 -input1.bam FBtr0070533 R 25 0 1.0 -0.745601135079 -input1.bam FBtr0070603 F 15 9 1.0 1.25973222843 -input1.bam FBtr0070603 F 16 6 1.0 0.214422506968 -input1.bam FBtr0070603 F 17 10 1.0 1.60816880226 -input1.bam FBtr0070603 F 18 7 1.0 0.56285908079 -input1.bam FBtr0070603 F 19 1 1.0 -1.52776036214 -input1.bam FBtr0070603 F 20 6 1.0 0.214422506968 -input1.bam FBtr0070603 F 21 3 1.0 -0.830887214499 -input1.bam FBtr0070603 F 22 3 1.0 -0.830887214499 -input1.bam FBtr0070603 F 23 10 1.0 1.60816880226 -input1.bam FBtr0070603 F 24 2 1.0 -1.17932378832 -input1.bam FBtr0070603 F 25 5 1.0 -0.134014066855 -input1.bam FBtr0070603 F 26 5 1.0 -0.134014066855 -input1.bam FBtr0070603 F 27 3 1.0 -0.830887214499 -input1.bam FBtr0070603 R 15 0 1.0 1.25973222843 -input1.bam FBtr0070603 R 16 0 1.0 0.214422506968 -input1.bam FBtr0070603 R 17 0 1.0 1.60816880226 -input1.bam FBtr0070603 R 18 0 1.0 0.56285908079 -input1.bam FBtr0070603 R 19 0 1.0 -1.52776036214 -input1.bam FBtr0070603 R 20 0 1.0 0.214422506968 -input1.bam FBtr0070603 R 21 0 1.0 -0.830887214499 -input1.bam FBtr0070603 R 22 0 1.0 -0.830887214499 -input1.bam FBtr0070603 R 23 0 1.0 1.60816880226 -input1.bam FBtr0070603 R 24 0 1.0 -1.17932378832 -input1.bam FBtr0070603 R 25 0 1.0 -0.134014066855 -input1.bam FBtr0070603 R 26 0 1.0 -0.134014066855 -input1.bam FBtr0070603 R 27 0 1.0 -0.830887214499 -input1.bam FBtr0070604 F 15 2 1.0 -0.340359959259 -input1.bam FBtr0070604 F 16 0 1.0 -0.618836289562 -input1.bam FBtr0070604 F 17 0 1.0 -0.618836289562 -input1.bam FBtr0070604 F 18 2 1.0 -0.340359959259 -input1.bam FBtr0070604 F 19 2 1.0 -0.340359959259 -input1.bam FBtr0070604 F 20 0 1.0 -0.618836289562 -input1.bam FBtr0070604 F 21 1 1.0 -0.479598124411 -input1.bam FBtr0070604 F 22 23 1.0 2.58364150892 -input1.bam FBtr0070604 F 23 10 1.0 0.773545361953 -input1.bam FBtr0070604 R 15 0 1.0 -0.340359959259 -input1.bam FBtr0070604 R 16 0 1.0 -0.618836289562 -input1.bam FBtr0070604 R 17 0 1.0 -0.618836289562 -input1.bam FBtr0070604 R 18 0 1.0 -0.340359959259 -input1.bam FBtr0070604 R 19 0 1.0 -0.340359959259 -input1.bam FBtr0070604 R 20 0 1.0 -0.618836289562 -input1.bam FBtr0070604 R 21 0 1.0 -0.479598124411 -input1.bam FBtr0070604 R 22 0 1.0 2.58364150892 -input1.bam FBtr0070604 R 23 0 1.0 0.773545361953 -input1.bam FBtr0070911 F 15 1 1.0 1.58113883008 -input1.bam FBtr0070911 F 16 0 1.0 -0.632455532034 -input1.bam FBtr0070911 F 17 0 1.0 -0.632455532034 -input1.bam FBtr0070911 F 18 0 1.0 -0.632455532034 -input1.bam FBtr0070911 F 19 0 1.0 -0.632455532034 -input1.bam FBtr0070911 F 20 0 1.0 -0.632455532034 -input1.bam FBtr0070911 F 21 1 1.0 1.58113883008 -input1.bam FBtr0070911 R 15 0 1.0 1.58113883008 -input1.bam FBtr0070911 R 16 0 1.0 -0.632455532034 -input1.bam FBtr0070911 R 17 0 1.0 -0.632455532034 -input1.bam FBtr0070911 R 18 0 1.0 -0.632455532034 -input1.bam FBtr0070911 R 19 0 1.0 -0.632455532034 -input1.bam FBtr0070911 R 20 0 1.0 -0.632455532034 -input1.bam FBtr0070911 R 21 0 1.0 1.58113883008 -input1.bam FBtr0078490 F 15 3 1.0 1.76410571268 -input1.bam FBtr0078490 F 16 3 1.0 1.76410571268 -input1.bam FBtr0078490 F 17 0 1.0 -0.742781352708 -input1.bam FBtr0078490 F 18 1 1.0 0.0928476690885 -input1.bam FBtr0078490 F 19 0 1.0 -0.742781352708 -input1.bam FBtr0078490 F 20 0 1.0 -0.742781352708 -input1.bam FBtr0078490 F 21 0 1.0 -0.742781352708 -input1.bam FBtr0078490 F 22 0 1.0 -0.742781352708 -input1.bam FBtr0078490 F 23 1 1.0 0.0928476690885 -input1.bam FBtr0078490 R 15 0 1.0 1.76410571268 -input1.bam FBtr0078490 R 16 0 1.0 1.76410571268 -input1.bam FBtr0078490 R 17 0 1.0 -0.742781352708 -input1.bam FBtr0078490 R 18 0 1.0 0.0928476690885 -input1.bam FBtr0078490 R 19 0 1.0 -0.742781352708 -input1.bam FBtr0078490 R 20 0 1.0 -0.742781352708 -input1.bam FBtr0078490 R 21 0 1.0 -0.742781352708 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FBtr0079694 F 21 0 1.0 -0.316227766017 +input2.bam FBtr0079694 F 22 0 1.0 -0.316227766017 +input2.bam FBtr0079694 F 23 0 1.0 -0.316227766017 +input2.bam FBtr0079694 F 24 0 1.0 -0.316227766017 +input2.bam FBtr0079694 F 25 0 1.0 -0.316227766017 +input2.bam FBtr0079694 F 26 0 1.0 -0.316227766017 +input2.bam FBtr0079694 F 27 0 1.0 -0.316227766017 +input2.bam FBtr0079694 F 28 0 1.0 -0.316227766017 +input2.bam FBtr0079694 F 29 0 1.0 -0.316227766017 +input2.bam FBtr0079702 F 19 0 2 0 +input2.bam FBtr0079702 F 20 0 2 0 +input2.bam FBtr0079702 F 21 0 2 0 +input2.bam FBtr0079702 F 22 0 2 0 +input2.bam FBtr0079702 F 23 0 2 0 +input2.bam FBtr0079702 F 24 0 2 0 +input2.bam FBtr0079702 F 25 0 2 0 +input2.bam FBtr0079702 F 26 0 2 0 +input2.bam FBtr0079702 F 27 0 2 0 +input2.bam FBtr0079702 F 28 0 2 0 +input2.bam FBtr0079702 F 29 0 2 0 +input2.bam FBtr0079728 F 19 0 2 0 +input2.bam FBtr0079728 F 20 0 2 0 +input2.bam FBtr0079728 F 21 0 2 0 +input2.bam FBtr0079728 F 22 0 2 0 +input2.bam FBtr0079728 F 23 0 2 0 +input2.bam FBtr0079728 F 24 0 2 0 +input2.bam FBtr0079728 F 25 0 2 0 +input2.bam FBtr0079728 F 26 0 2 0 +input2.bam FBtr0079728 F 27 0 2 0 +input2.bam FBtr0079728 F 28 0 2 0 +input2.bam FBtr0079728 F 29 0 2 0 +input2.bam FBtr0079729 F 19 0 2 0 +input2.bam FBtr0079729 F 20 0 2 0 +input2.bam FBtr0079729 F 21 0 2 0 +input2.bam FBtr0079729 F 22 0 2 0 +input2.bam FBtr0079729 F 23 0 2 0 +input2.bam FBtr0079729 F 24 0 2 0 +input2.bam FBtr0079729 F 25 0 2 0 +input2.bam FBtr0079729 F 26 0 2 0 +input2.bam FBtr0079729 F 27 0 2 0 +input2.bam FBtr0079729 F 28 0 2 0 +input2.bam FBtr0079729 F 29 0 2 0 +input2.bam FBtr0079752 F 19 0 1.0 -0.316227766017 +input2.bam FBtr0079752 F 20 0 1.0 -0.316227766017 +input2.bam FBtr0079752 F 21 0 1.0 -0.316227766017 +input2.bam FBtr0079752 F 22 0 1.0 -0.316227766017 +input2.bam FBtr0079752 F 23 0 1.0 -0.316227766017 +input2.bam FBtr0079752 F 24 1 1.0 3.16227766017 +input2.bam FBtr0079752 F 25 0 1.0 -0.316227766017 +input2.bam FBtr0079752 F 26 0 1.0 -0.316227766017 +input2.bam FBtr0079752 F 27 0 1.0 -0.316227766017 +input2.bam FBtr0079752 F 28 0 1.0 -0.316227766017 +input2.bam FBtr0079752 F 29 0 1.0 -0.316227766017 +input2.bam FBtr0079820 F 19 25 1.0 2.1262475074 +input2.bam FBtr0079820 F 20 24 1.0 2.01895978913 +input2.bam FBtr0079820 F 21 7 1.0 0.19506857866 +input2.bam FBtr0079820 F 22 1 1.0 -0.448657730919 +input2.bam FBtr0079820 F 23 0 1.0 -0.555945449182 +input2.bam FBtr0079820 F 24 0 1.0 -0.555945449182 +input2.bam FBtr0079820 F 25 0 1.0 -0.555945449182 +input2.bam FBtr0079820 F 26 0 1.0 -0.555945449182 +input2.bam FBtr0079820 F 27 0 1.0 -0.555945449182 +input2.bam FBtr0079820 F 28 0 1.0 -0.555945449182 +input2.bam FBtr0079820 F 29 0 1.0 -0.555945449182 +input2.bam FBtr0080609 F 19 2 1.0 2.35747583396 +input2.bam FBtr0080609 F 20 0 1.0 -0.693375245282 +input2.bam FBtr0080609 F 21 0 1.0 -0.693375245282 +input2.bam FBtr0080609 F 22 1 1.0 0.832050294338 +input2.bam FBtr0080609 F 23 1 1.0 0.832050294338 +input2.bam FBtr0080609 F 24 0 1.0 -0.693375245282 +input2.bam FBtr0080609 F 25 1 1.0 0.832050294338 +input2.bam FBtr0080609 F 26 0 1.0 -0.693375245282 +input2.bam FBtr0080609 F 27 0 1.0 -0.693375245282 +input2.bam FBtr0080609 F 28 0 1.0 -0.693375245282 +input2.bam FBtr0080609 F 29 0 1.0 -0.693375245282 +input2.bam FBtr0080644 F 19 0 2 0 +input2.bam FBtr0080644 F 20 0 2 0 +input2.bam FBtr0080644 F 21 0 2 0 +input2.bam FBtr0080644 F 22 0 2 0 +input2.bam FBtr0080644 F 23 0 2 0 +input2.bam FBtr0080644 F 24 0 2 0 +input2.bam FBtr0080644 F 25 0 2 0 +input2.bam FBtr0080644 F 26 0 2 0 +input2.bam FBtr0080644 F 27 0 2 0 +input2.bam FBtr0080644 F 28 0 2 0 +input2.bam FBtr0080644 F 29 0 2 0 +input2.bam FBtr0080646 F 19 0 1.0 -0.316227766017 +input2.bam FBtr0080646 F 20 0 1.0 -0.316227766017 +input2.bam FBtr0080646 F 21 1 1.0 3.16227766017 +input2.bam FBtr0080646 F 22 0 1.0 -0.316227766017 +input2.bam FBtr0080646 F 23 0 1.0 -0.316227766017 +input2.bam FBtr0080646 F 24 0 1.0 -0.316227766017 +input2.bam FBtr0080646 F 25 0 1.0 -0.316227766017 +input2.bam FBtr0080646 F 26 0 1.0 -0.316227766017 +input2.bam FBtr0080646 F 27 0 1.0 -0.316227766017 +input2.bam FBtr0080646 F 28 0 1.0 -0.316227766017 +input2.bam FBtr0080646 F 29 0 1.0 -0.316227766017 +input2.bam FBtr0080647 F 19 0 2 0 +input2.bam FBtr0080647 F 20 0 2 0 +input2.bam FBtr0080647 F 21 0 2 0 +input2.bam FBtr0080647 F 22 0 2 0 +input2.bam FBtr0080647 F 23 0 2 0 +input2.bam FBtr0080647 F 24 0 2 0 +input2.bam FBtr0080647 F 25 0 2 0 +input2.bam FBtr0080647 F 26 0 2 0 +input2.bam FBtr0080647 F 27 0 2 0 +input2.bam FBtr0080647 F 28 0 2 0 +input2.bam FBtr0080647 F 29 0 2 0 +input2.bam FBtr0080660 F 19 0 2 0 +input2.bam FBtr0080660 F 20 0 2 0 +input2.bam FBtr0080660 F 21 0 2 0 +input2.bam FBtr0080660 F 22 0 2 0 +input2.bam FBtr0080660 F 23 0 2 0 +input2.bam FBtr0080660 F 24 0 2 0 +input2.bam FBtr0080660 F 25 0 2 0 +input2.bam FBtr0080660 F 26 0 2 0 +input2.bam FBtr0080660 F 27 0 2 0 +input2.bam FBtr0080660 F 28 0 2 0 +input2.bam FBtr0080660 F 29 0 2 0 +input2.bam FBtr0080663 F 19 9 1.0 2.09341857157 +input2.bam FBtr0080663 F 20 7 1.0 1.46252530342 +input2.bam FBtr0080663 F 21 4 1.0 0.516185401209 +input2.bam FBtr0080663 F 22 5 1.0 0.831632035281 +input2.bam FBtr0080663 F 23 0 1.0 -0.745601135079 +input2.bam FBtr0080663 F 24 1 1.0 -0.430154501007 +input2.bam FBtr0080663 F 25 0 1.0 -0.745601135079 +input2.bam FBtr0080663 F 26 0 1.0 -0.745601135079 +input2.bam FBtr0080663 F 27 0 1.0 -0.745601135079 +input2.bam FBtr0080663 F 28 0 1.0 -0.745601135079 +input2.bam FBtr0080663 F 29 0 1.0 -0.745601135079 +input2.bam FBtr0080664 F 19 24 0.971428571429 2.19436796542 +input2.bam FBtr0080664 F 20 21 0.971428571429 1.8210991878 +input2.bam FBtr0080664 F 21 8 0.971428571429 0.203601151431 +input2.bam FBtr0080664 F 22 4 0.971428571429 -0.169667626192 +input2.bam FBtr0080664 F 23 4 0.971428571429 -0.169667626192 +input2.bam FBtr0080664 F 24 0 0.971428571429 -0.791782255563 +input2.bam FBtr0080664 F 25 3 0.971428571429 -0.418513477941 +input2.bam FBtr0080664 F 26 4 0.971428571429 -0.294090552066 +input2.bam FBtr0080664 F 27 0 0.971428571429 -0.791782255563 +input2.bam FBtr0080664 F 28 0 0.971428571429 -0.791782255563 +input2.bam FBtr0080664 F 29 0 0.971428571429 -0.791782255563 +input2.bam FBtr0080664 R 19 0 0.971428571429 2.19436796542 +input2.bam FBtr0080664 R 20 0 0.971428571429 1.8210991878 +input2.bam FBtr0080664 R 21 0 0.971428571429 0.203601151431 +input2.bam FBtr0080664 R 22 1 0.971428571429 -0.169667626192 +input2.bam FBtr0080664 R 23 1 0.971428571429 -0.169667626192 +input2.bam FBtr0080664 R 24 0 0.971428571429 -0.791782255563 +input2.bam FBtr0080664 R 25 0 0.971428571429 -0.418513477941 +input2.bam FBtr0080664 R 26 0 0.971428571429 -0.294090552066 +input2.bam FBtr0080664 R 27 0 0.971428571429 -0.791782255563 +input2.bam FBtr0080664 R 28 0 0.971428571429 -0.791782255563 +input2.bam FBtr0080664 R 29 0 0.971428571429 -0.791782255563
--- a/test-data/input1_input2new_norm_1_2_counts.tab Wed Apr 10 06:38:33 2019 -0400 +++ b/test-data/input1_input2new_norm_1_2_counts.tab Sun Apr 14 14:43:44 2019 -0400 @@ -1,616 +1,392 @@ Dataset Chromosome Chrom_length Coordinate Polarity Counts -input1.bam FBtr0070001 72 1 F 1 -input1.bam FBtr0070001 72 7 F 6 +input1.bam FBtr0070001 72 1 F 0 +input1.bam FBtr0070001 72 7 F 5 input1.bam FBtr0070001 72 8 F 3 input1.bam FBtr0070001 72 11 F 2 input1.bam FBtr0070001 72 16 F 1 input1.bam FBtr0070001 72 17 F 1 -input1.bam FBtr0070001 72 18 F 1 input1.bam FBtr0070001 72 27 F 2 input1.bam FBtr0070001 72 30 F 1 input1.bam FBtr0070001 72 31 F 11 input1.bam FBtr0070001 72 32 F 27 input1.bam FBtr0070001 72 34 F 1 input1.bam FBtr0070001 72 72 F 0 -input1.bam FBtr0070533 72 1 F 1 -input1.bam FBtr0070533 72 12 F 2 -input1.bam FBtr0070533 72 15 F 1 +input1.bam FBtr0070533 72 1 F 0 input1.bam FBtr0070533 72 19 F 5 input1.bam FBtr0070533 72 20 F 1 -input1.bam FBtr0070533 72 21 F 1 input1.bam FBtr0070533 72 22 F 1 -input1.bam FBtr0070533 72 25 F 1 -input1.bam FBtr0070533 72 26 F 1 input1.bam FBtr0070533 72 28 F 1 -input1.bam FBtr0070533 72 32 F 4 +input1.bam FBtr0070533 72 32 F 3 input1.bam FBtr0070533 72 35 F 1 input1.bam FBtr0070533 72 37 F 2 -input1.bam FBtr0070533 72 38 F 2 input1.bam FBtr0070533 72 72 F 0 -input1.bam FBtr0070603 72 1 F 2 +input1.bam FBtr0070603 72 1 F 0 input1.bam FBtr0070603 72 3 F 1 input1.bam FBtr0070603 72 4 F 1 -input1.bam FBtr0070603 72 6 F 1 -input1.bam FBtr0070603 72 7 F 7 -input1.bam FBtr0070603 72 8 F 4 -input1.bam FBtr0070603 72 9 F 7 -input1.bam FBtr0070603 72 12 F 2 +input1.bam FBtr0070603 72 12 F 1 input1.bam FBtr0070603 72 13 F 1 -input1.bam FBtr0070603 72 15 F 2 -input1.bam FBtr0070603 72 16 F 2 +input1.bam FBtr0070603 72 15 F 1 +input1.bam FBtr0070603 72 16 F 1 input1.bam FBtr0070603 72 17 F 3 -input1.bam FBtr0070603 72 18 F 1 -input1.bam FBtr0070603 72 19 F 9 -input1.bam FBtr0070603 72 20 F 3 +input1.bam FBtr0070603 72 19 F 8 +input1.bam FBtr0070603 72 20 F 2 input1.bam FBtr0070603 72 21 F 1 input1.bam FBtr0070603 72 22 F 3 -input1.bam FBtr0070603 72 24 F 2 +input1.bam FBtr0070603 72 24 F 1 input1.bam FBtr0070603 72 25 F 1 input1.bam FBtr0070603 72 26 F 6 input1.bam FBtr0070603 72 27 F 3 input1.bam FBtr0070603 72 32 F 1 -input1.bam FBtr0070603 72 34 F 3 -input1.bam FBtr0070603 72 38 F 1 +input1.bam FBtr0070603 72 34 F 2 input1.bam FBtr0070603 72 42 F 1 -input1.bam FBtr0070603 72 51 F 1 -input1.bam FBtr0070603 72 56 F 1 input1.bam FBtr0070603 72 72 F 0 -input1.bam FBtr0070604 72 1 F 1 +input1.bam FBtr0070604 72 1 F 0 input1.bam FBtr0070604 72 18 F 1 input1.bam FBtr0070604 72 22 F 1 -input1.bam FBtr0070604 72 30 F 2 input1.bam FBtr0070604 72 31 F 10 input1.bam FBtr0070604 72 32 F 24 -input1.bam FBtr0070604 72 57 F 1 input1.bam FBtr0070604 72 72 F 0 input1.bam FBtr0070911 73 1 F 0 input1.bam FBtr0070911 73 15 F 1 -input1.bam FBtr0070911 73 38 F 1 input1.bam FBtr0070911 73 73 F 0 input1.bam FBtr0078490 72 1 F 0 -input1.bam FBtr0078490 72 13 F 2 -input1.bam FBtr0078490 72 17 F 1 -input1.bam FBtr0078490 72 18 F 1 -input1.bam FBtr0078490 72 25 F 1 -input1.bam FBtr0078490 72 28 F 2 -input1.bam FBtr0078490 72 38 F 1 +input1.bam FBtr0078490 72 28 F 1 input1.bam FBtr0078490 72 72 F 0 -input1.bam FBtr0078580 72 1 F 1041 +input1.bam FBtr0078580 72 1 F 420 input1.bam FBtr0078580 72 3 F 3 input1.bam FBtr0078580 72 4 F 4 input1.bam FBtr0078580 72 5 F 5 -input1.bam FBtr0078580 72 6 F 4 +input1.bam FBtr0078580 72 6 F 2 input1.bam FBtr0078580 72 7 F 1 -input1.bam FBtr0078580 72 8 F 2 +input1.bam FBtr0078580 72 8 F 1 input1.bam FBtr0078580 72 11 F 1 -input1.bam FBtr0078580 72 12 F 13 -input1.bam FBtr0078580 72 14 F 7 -input1.bam FBtr0078580 72 15 F 1 -input1.bam FBtr0078580 72 16 F 4 -input1.bam FBtr0078580 72 17 F 1 +input1.bam FBtr0078580 72 12 F 3 +input1.bam FBtr0078580 72 16 F 3 input1.bam FBtr0078580 72 19 F 1 input1.bam FBtr0078580 72 20 F 2 -input1.bam FBtr0078580 72 21 F 5 -input1.bam FBtr0078580 72 24 F 3 +input1.bam FBtr0078580 72 21 F 4 input1.bam FBtr0078580 72 25 F 2 -input1.bam FBtr0078580 72 29 F 1 -input1.bam FBtr0078580 72 31 F 1 -input1.bam FBtr0078580 72 52 F 2 input1.bam FBtr0078580 72 72 F 0 input1.bam FBtr0078790 73 1 F 1 -input1.bam FBtr0078790 73 17 F 2 input1.bam FBtr0078790 73 33 F 1 -input1.bam FBtr0078790 73 42 F 4 +input1.bam FBtr0078790 73 42 F 2 input1.bam FBtr0078790 73 44 F 2 -input1.bam FBtr0078790 73 46 F 1 -input1.bam FBtr0078790 73 47 F 1 input1.bam FBtr0078790 73 52 F 1 -input1.bam FBtr0078790 73 69 R 1 input1.bam FBtr0078790 73 73 F 0 -input1.bam FBtr0079064 72 1 F 1 +input1.bam FBtr0079064 72 1 F 0 input1.bam FBtr0079064 72 3 F 1 -input1.bam FBtr0079064 72 33 F 1 -input1.bam FBtr0079064 72 52 F 1 input1.bam FBtr0079064 72 72 F 0 -input1.bam FBtr0079090 72 1 F 2 +input1.bam FBtr0079090 72 1 F 1 input1.bam FBtr0079090 72 26 F 1 -input1.bam FBtr0079090 72 33 F 1 -input1.bam FBtr0079090 72 53 F 1 input1.bam FBtr0079090 72 56 R 1 input1.bam FBtr0079090 72 72 F 0 input1.bam FBtr0079338 73 1 F 0 -input1.bam FBtr0079338 73 12 F 1 -input1.bam FBtr0079338 73 13 F 2 -input1.bam FBtr0079338 73 14 F 1 -input1.bam FBtr0079338 73 17 F 1 -input1.bam FBtr0079338 73 25 F 1 +input1.bam FBtr0079338 73 13 F 1 input1.bam FBtr0079338 73 42 F 8 input1.bam FBtr0079338 73 43 F 1 -input1.bam FBtr0079338 73 46 F 1 input1.bam FBtr0079338 73 73 F 0 -input1.bam FBtr0079528 71 1 F 19 +input1.bam FBtr0079528 71 1 F 10 input1.bam FBtr0079528 71 3 F 55 input1.bam FBtr0079528 71 4 F 2 -input1.bam FBtr0079528 71 8 F 4 +input1.bam FBtr0079528 71 8 F 3 input1.bam FBtr0079528 71 10 F 1 -input1.bam FBtr0079528 71 11 F 2 -input1.bam FBtr0079528 71 13 F 1 -input1.bam FBtr0079528 71 14 F 4 -input1.bam FBtr0079528 71 16 F 1 -input1.bam FBtr0079528 71 17 F 4 -input1.bam FBtr0079528 71 18 F 4 -input1.bam FBtr0079528 71 28 F 1 -input1.bam FBtr0079528 71 35 F 1 +input1.bam FBtr0079528 71 11 F 1 +input1.bam FBtr0079528 71 14 F 2 +input1.bam FBtr0079528 71 18 F 3 input1.bam FBtr0079528 71 36 F 1 -input1.bam FBtr0079528 71 37 F 1 -input1.bam FBtr0079528 71 51 F 5 input1.bam FBtr0079528 71 71 F 0 -input1.bam FBtr0079596 73 1 F 13 -input1.bam FBtr0079596 73 3 F 13 +input1.bam FBtr0079596 73 1 F 3 +input1.bam FBtr0079596 73 3 F 11 input1.bam FBtr0079596 73 4 F 31 -input1.bam FBtr0079596 73 5 F 2 -input1.bam FBtr0079596 73 6 F 11 -input1.bam FBtr0079596 73 8 F 9 -input1.bam FBtr0079596 73 9 F 12 -input1.bam FBtr0079596 73 10 F 3 -input1.bam FBtr0079596 73 11 F 19 -input1.bam FBtr0079596 73 12 F 1 -input1.bam FBtr0079596 73 13 F 20 -input1.bam FBtr0079596 73 14 F 6 -input1.bam FBtr0079596 73 15 F 1 -input1.bam FBtr0079596 73 16 F 3 -input1.bam FBtr0079596 73 17 F 2 -input1.bam FBtr0079596 73 18 F 1 -input1.bam FBtr0079596 73 19 F 1 -input1.bam FBtr0079596 73 53 F 2 +input1.bam FBtr0079596 73 5 F 1 +input1.bam FBtr0079596 73 6 F 4 +input1.bam FBtr0079596 73 13 F 1 +input1.bam FBtr0079596 73 53 F 1 input1.bam FBtr0079596 73 54 F 2 input1.bam FBtr0079596 73 73 F 0 input1.bam 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FBtr0079820 74 52 F 1 -input_new2.bam FBtr0079820 74 53 F 28 +input_new2.bam FBtr0079820 74 53 F 25 input_new2.bam FBtr0079820 74 54 F 26 -input_new2.bam FBtr0079820 74 55 F 10 -input_new2.bam FBtr0079820 74 56 F 2 -input_new2.bam FBtr0079820 74 57 F 6 -input_new2.bam FBtr0079820 74 58 F 5 -input_new2.bam FBtr0079820 74 59 F 11 -input_new2.bam FBtr0079820 74 60 F 19 +input_new2.bam FBtr0079820 74 55 F 5 input_new2.bam FBtr0079820 74 74 F 0 input_new2.bam FBtr0080609 72 1 F 0 input_new2.bam FBtr0080609 72 20 F 1 -input_new2.bam FBtr0080609 72 21 F 2 +input_new2.bam FBtr0080609 72 21 F 1 input_new2.bam FBtr0080609 72 22 F 1 input_new2.bam FBtr0080609 72 33 F 1 -input_new2.bam FBtr0080609 72 39 F 1 -input_new2.bam FBtr0080609 72 52 F 1 input_new2.bam FBtr0080609 72 53 F 1 input_new2.bam FBtr0080609 72 72 F 0 input_new2.bam FBtr0080644 72 1 F 0 -input_new2.bam FBtr0080644 72 57 F 1 -input_new2.bam FBtr0080644 72 58 F 7 input_new2.bam FBtr0080644 72 72 F 0 input_new2.bam FBtr0080646 72 1 F 0 input_new2.bam FBtr0080646 72 51 F 1 -input_new2.bam FBtr0080646 72 57 F 2 -input_new2.bam FBtr0080646 72 58 F 9 input_new2.bam FBtr0080646 72 72 F 0 -input_new2.bam FBtr0080647 72 1 F 1 -input_new2.bam FBtr0080647 72 57 F 4 -input_new2.bam FBtr0080647 72 58 F 7 +input_new2.bam FBtr0080647 72 1 F 0 input_new2.bam FBtr0080647 72 72 F 0 input_new2.bam FBtr0080660 72 1 F 0 -input_new2.bam FBtr0080660 72 58 F 11 input_new2.bam FBtr0080660 72 72 F 0 input_new2.bam FBtr0080663 71 1 F 2 input_new2.bam FBtr0080663 71 11 F 1 input_new2.bam FBtr0080663 71 12 F 4 input_new2.bam FBtr0080663 71 13 F 4 -input_new2.bam FBtr0080663 71 14 F 22 -input_new2.bam FBtr0080663 71 15 F 14 -input_new2.bam FBtr0080663 71 16 F 5 -input_new2.bam FBtr0080663 71 17 F 12 -input_new2.bam FBtr0080663 71 18 F 5 -input_new2.bam FBtr0080663 71 19 F 6 -input_new2.bam FBtr0080663 71 20 F 6 -input_new2.bam FBtr0080663 71 21 F 13 -input_new2.bam FBtr0080663 71 22 F 3 -input_new2.bam FBtr0080663 71 31 F 1 -input_new2.bam FBtr0080663 71 50 F 2 +input_new2.bam FBtr0080663 71 14 F 7 +input_new2.bam FBtr0080663 71 15 F 2 +input_new2.bam FBtr0080663 71 16 F 1 +input_new2.bam FBtr0080663 71 18 F 1 +input_new2.bam FBtr0080663 71 19 F 1 +input_new2.bam FBtr0080663 71 20 F 1 +input_new2.bam FBtr0080663 71 21 F 1 input_new2.bam FBtr0080663 71 51 F 1 -input_new2.bam FBtr0080663 71 52 F 2 -input_new2.bam FBtr0080663 71 57 F 3 input_new2.bam FBtr0080663 71 71 F 0 input_new2.bam FBtr0080664 71 1 F 1 input_new2.bam FBtr0080664 71 3 F 2 input_new2.bam FBtr0080664 71 10 F 1 input_new2.bam FBtr0080664 71 11 F 2 input_new2.bam FBtr0080664 71 12 F 3 -input_new2.bam FBtr0080664 71 13 F 11 -input_new2.bam FBtr0080664 71 14 F 11 -input_new2.bam FBtr0080664 71 15 F 17 -input_new2.bam FBtr0080664 71 16 F 15 -input_new2.bam FBtr0080664 71 17 F 13 -input_new2.bam FBtr0080664 71 18 F 10 -input_new2.bam FBtr0080664 71 19 F 8 -input_new2.bam FBtr0080664 71 20 F 1 -input_new2.bam FBtr0080664 71 21 F 15 -input_new2.bam FBtr0080664 71 22 F 6 -input_new2.bam FBtr0080664 71 24 F 1 +input_new2.bam FBtr0080664 71 13 F 10 +input_new2.bam FBtr0080664 71 14 F 3 +input_new2.bam FBtr0080664 71 15 F 2 +input_new2.bam FBtr0080664 71 16 F 4 +input_new2.bam FBtr0080664 71 18 F 5 +input_new2.bam FBtr0080664 71 19 F 5 +input_new2.bam FBtr0080664 71 22 F 1 input_new2.bam FBtr0080664 71 30 F 1 -input_new2.bam FBtr0080664 71 31 F 3 -input_new2.bam FBtr0080664 71 32 F 39 -input_new2.bam FBtr0080664 71 33 F 4 -input_new2.bam FBtr0080664 71 34 F 37 -input_new2.bam FBtr0080664 71 35 F 135 -input_new2.bam FBtr0080664 71 36 F 8 -input_new2.bam FBtr0080664 71 37 F 25 -input_new2.bam FBtr0080664 71 38 F 8 -input_new2.bam FBtr0080664 71 39 F 1 +input_new2.bam FBtr0080664 71 31 F 2 +input_new2.bam FBtr0080664 71 32 F 8 +input_new2.bam FBtr0080664 71 33 F 1 +input_new2.bam FBtr0080664 71 34 F 4 +input_new2.bam FBtr0080664 71 36 F 4 +input_new2.bam FBtr0080664 71 37 F 5 +input_new2.bam FBtr0080664 71 38 F 2 input_new2.bam FBtr0080664 71 42 F 1 -input_new2.bam FBtr0080664 71 47 F 1 -input_new2.bam FBtr0080664 71 50 F 2 -input_new2.bam FBtr0080664 71 52 F 1 input_new2.bam FBtr0080664 71 53 F 1 -input_new2.bam FBtr0080664 71 56 F 1 -input_new2.bam FBtr0080664 71 57 F 2 input_new2.bam FBtr0080664 71 62 R 1 input_new2.bam FBtr0080664 71 71 F 0 input_new2.bam FBtr0080664 71 71 R 1
--- a/test-data/input1_mean.tab Wed Apr 10 06:38:33 2019 -0400 +++ b/test-data/input1_mean.tab Sun Apr 14 14:43:44 2019 -0400 @@ -1,300 +1,190 @@ Dataset Chromosome Chrom_length Coordinate Polarity Mean -input1.bam FBtr0070001 72 1 F 17.0 -input1.bam FBtr0070001 72 7 F 20.3 +input1.bam FBtr0070001 72 1 F 0 +input1.bam FBtr0070001 72 7 F 21.2 input1.bam FBtr0070001 72 8 F 21.3 input1.bam FBtr0070001 72 11 F 20.5 input1.bam FBtr0070001 72 16 F 19.0 input1.bam FBtr0070001 72 17 F 23.0 -input1.bam FBtr0070001 72 18 F 16.0 input1.bam FBtr0070001 72 27 F 23.5 input1.bam FBtr0070001 72 30 F 23.0 input1.bam FBtr0070001 72 31 F 23.0 input1.bam FBtr0070001 72 32 F 22.0 input1.bam FBtr0070001 72 34 F 20.0 input1.bam FBtr0070001 72 72 F 0 -input1.bam FBtr0070533 72 1 F 15.0 -input1.bam FBtr0070533 72 12 F 18.0 -input1.bam FBtr0070533 72 15 F 15.0 +input1.bam FBtr0070533 72 1 F 0 input1.bam FBtr0070533 72 19 F 21.8 input1.bam FBtr0070533 72 20 F 23.0 -input1.bam FBtr0070533 72 21 F 18.0 input1.bam FBtr0070533 72 22 F 20.0 -input1.bam FBtr0070533 72 25 F 17.0 -input1.bam FBtr0070533 72 26 F 16.0 input1.bam FBtr0070533 72 28 F 25.0 -input1.bam FBtr0070533 72 32 F 20.5 +input1.bam FBtr0070533 72 32 F 21.3 input1.bam FBtr0070533 72 35 F 19.0 input1.bam FBtr0070533 72 37 F 19.0 -input1.bam FBtr0070533 72 38 F 18.0 input1.bam FBtr0070533 72 72 F 0 -input1.bam FBtr0070603 72 1 F 16.5 +input1.bam FBtr0070603 72 1 F 0 input1.bam FBtr0070603 72 3 F 21.0 input1.bam FBtr0070603 72 4 F 20.0 -input1.bam FBtr0070603 72 6 F 18.0 -input1.bam FBtr0070603 72 7 F 17.1 -input1.bam FBtr0070603 72 8 F 16.0 -input1.bam FBtr0070603 72 9 F 15.0 -input1.bam FBtr0070603 72 12 F 20.0 +input1.bam FBtr0070603 72 12 F 23.0 input1.bam FBtr0070603 72 13 F 22.0 -input1.bam FBtr0070603 72 15 F 18.5 -input1.bam FBtr0070603 72 16 F 20.5 +input1.bam FBtr0070603 72 15 F 20.0 +input1.bam FBtr0070603 72 16 F 24.0 input1.bam FBtr0070603 72 17 F 24.0 -input1.bam FBtr0070603 72 18 F 16.0 -input1.bam FBtr0070603 72 19 F 22.6 -input1.bam FBtr0070603 72 20 F 21.0 +input1.bam FBtr0070603 72 19 F 23.3 +input1.bam FBtr0070603 72 20 F 24.0 input1.bam FBtr0070603 72 21 F 25.0 input1.bam FBtr0070603 72 22 F 20.7 -input1.bam FBtr0070603 72 24 F 19.5 +input1.bam FBtr0070603 72 24 F 21.0 input1.bam FBtr0070603 72 25 F 23.0 input1.bam FBtr0070603 72 26 F 25.8 input1.bam FBtr0070603 72 27 F 26.3 input1.bam FBtr0070603 72 32 F 20.0 -input1.bam FBtr0070603 72 34 F 19.3 -input1.bam FBtr0070603 72 38 F 18.0 +input1.bam FBtr0070603 72 34 F 20.0 input1.bam FBtr0070603 72 42 F 21.0 -input1.bam FBtr0070603 72 51 F 18.0 -input1.bam FBtr0070603 72 56 F 16.0 input1.bam FBtr0070603 72 72 F 0 -input1.bam FBtr0070604 72 1 F 15.0 +input1.bam FBtr0070604 72 1 F 0 input1.bam FBtr0070604 72 18 F 23.0 input1.bam FBtr0070604 72 22 F 19.0 -input1.bam FBtr0070604 72 30 F 18.0 input1.bam FBtr0070604 72 31 F 22.6 input1.bam FBtr0070604 72 32 F 22.0 -input1.bam FBtr0070604 72 57 F 15.0 input1.bam FBtr0070604 72 72 F 0 input1.bam FBtr0070911 73 1 F 0 input1.bam FBtr0070911 73 15 F 21.0 -input1.bam FBtr0070911 73 38 F 15.0 input1.bam FBtr0070911 73 73 F 0 input1.bam FBtr0078490 72 1 F 0 -input1.bam FBtr0078490 72 13 F 16.0 -input1.bam FBtr0078490 72 17 F 16.0 -input1.bam FBtr0078490 72 18 F 15.0 -input1.bam FBtr0078490 72 25 F 15.0 -input1.bam FBtr0078490 72 28 F 19.0 -input1.bam FBtr0078490 72 38 F 18.0 +input1.bam FBtr0078490 72 28 F 23.0 input1.bam FBtr0078490 72 72 F 0 -input1.bam FBtr0078580 72 1 F 18.9 +input1.bam FBtr0078580 72 1 F 24.5 input1.bam FBtr0078580 72 3 F 22.0 input1.bam FBtr0078580 72 4 F 25.3 input1.bam FBtr0078580 72 5 F 21.0 -input1.bam FBtr0078580 72 6 F 19.0 +input1.bam FBtr0078580 72 6 F 21.0 input1.bam FBtr0078580 72 7 F 22.0 -input1.bam FBtr0078580 72 8 F 18.0 +input1.bam FBtr0078580 72 8 F 19.0 input1.bam FBtr0078580 72 11 F 23.0 -input1.bam FBtr0078580 72 12 F 18.0 -input1.bam FBtr0078580 72 14 F 15.3 -input1.bam FBtr0078580 72 15 F 16.0 -input1.bam FBtr0078580 72 16 F 19.0 -input1.bam FBtr0078580 72 17 F 17.0 +input1.bam FBtr0078580 72 12 F 21.3 +input1.bam FBtr0078580 72 16 F 20.3 input1.bam FBtr0078580 72 19 F 24.0 input1.bam FBtr0078580 72 20 F 21.0 -input1.bam FBtr0078580 72 21 F 19.4 -input1.bam FBtr0078580 72 24 F 17.0 +input1.bam FBtr0078580 72 21 F 20.3 input1.bam FBtr0078580 72 25 F 27.5 -input1.bam FBtr0078580 72 29 F 17.0 -input1.bam FBtr0078580 72 31 F 17.0 -input1.bam FBtr0078580 72 52 F 16.0 input1.bam FBtr0078580 72 72 F 0 input1.bam FBtr0078790 73 1 F 19.0 -input1.bam FBtr0078790 73 17 F 16.0 input1.bam FBtr0078790 73 33 F 23.0 -input1.bam FBtr0078790 73 42 F 18.5 +input1.bam FBtr0078790 73 42 F 22.0 input1.bam FBtr0078790 73 44 F 19.5 -input1.bam FBtr0078790 73 46 F 17.0 -input1.bam FBtr0078790 73 47 F 18.0 input1.bam FBtr0078790 73 52 F 20.0 -input1.bam FBtr0078790 73 69 R 15.0 input1.bam FBtr0078790 73 73 F 0 -input1.bam FBtr0079064 72 1 F 15.0 +input1.bam FBtr0079064 72 1 F 0 input1.bam FBtr0079064 72 3 F 21.0 -input1.bam FBtr0079064 72 33 F 15.0 -input1.bam FBtr0079064 72 52 F 17.0 input1.bam FBtr0079064 72 72 F 0 -input1.bam FBtr0079090 72 1 F 21.5 +input1.bam FBtr0079090 72 1 F 28.0 input1.bam FBtr0079090 72 26 F 24.0 -input1.bam FBtr0079090 72 33 F 16.0 -input1.bam FBtr0079090 72 53 F 18.0 input1.bam FBtr0079090 72 56 R 21.0 input1.bam FBtr0079090 72 72 F 0 input1.bam FBtr0079338 73 1 F 0 -input1.bam FBtr0079338 73 12 F 17.0 -input1.bam FBtr0079338 73 13 F 17.5 -input1.bam FBtr0079338 73 14 F 15.0 -input1.bam FBtr0079338 73 17 F 15.0 -input1.bam FBtr0079338 73 25 F 16.0 +input1.bam FBtr0079338 73 13 F 19.0 input1.bam FBtr0079338 73 42 F 21.8 input1.bam FBtr0079338 73 43 F 21.0 -input1.bam FBtr0079338 73 46 F 18.0 input1.bam FBtr0079338 73 73 F 0 -input1.bam FBtr0079528 71 1 F 20.8 +input1.bam FBtr0079528 71 1 F 25.3 input1.bam FBtr0079528 71 3 F 23.6 input1.bam FBtr0079528 71 4 F 24.0 -input1.bam FBtr0079528 71 8 F 20.3 +input1.bam FBtr0079528 71 8 F 21.0 input1.bam FBtr0079528 71 10 F 21.0 -input1.bam FBtr0079528 71 11 F 19.0 -input1.bam FBtr0079528 71 13 F 16.0 -input1.bam FBtr0079528 71 14 F 18.5 -input1.bam FBtr0079528 71 16 F 15.0 -input1.bam FBtr0079528 71 17 F 15.3 -input1.bam FBtr0079528 71 18 F 19.8 -input1.bam FBtr0079528 71 28 F 16.0 -input1.bam FBtr0079528 71 35 F 15.0 +input1.bam FBtr0079528 71 11 F 22.0 +input1.bam FBtr0079528 71 14 F 19.0 +input1.bam FBtr0079528 71 18 F 20.3 input1.bam FBtr0079528 71 36 F 20.0 -input1.bam FBtr0079528 71 37 F 18.0 -input1.bam FBtr0079528 71 51 F 15.0 input1.bam FBtr0079528 71 71 F 0 -input1.bam FBtr0079596 73 1 F 16.2 -input1.bam FBtr0079596 73 3 F 21.8 +input1.bam FBtr0079596 73 1 F 19.0 +input1.bam FBtr0079596 73 3 F 23.1 input1.bam FBtr0079596 73 4 F 21.5 -input1.bam FBtr0079596 73 5 F 18.5 -input1.bam FBtr0079596 73 6 F 17.5 -input1.bam FBtr0079596 73 8 F 16.6 -input1.bam FBtr0079596 73 9 F 16.1 -input1.bam FBtr0079596 73 10 F 15.3 -input1.bam FBtr0079596 73 11 F 15.2 -input1.bam FBtr0079596 73 12 F 17.0 -input1.bam FBtr0079596 73 13 F 16.1 -input1.bam FBtr0079596 73 14 F 15.0 -input1.bam FBtr0079596 73 15 F 18.0 -input1.bam FBtr0079596 73 16 F 16.7 -input1.bam FBtr0079596 73 17 F 16.0 -input1.bam FBtr0079596 73 18 F 15.0 -input1.bam FBtr0079596 73 19 F 15.0 -input1.bam FBtr0079596 73 53 F 18.5 +input1.bam FBtr0079596 73 5 F 19.0 +input1.bam FBtr0079596 73 6 F 19.0 +input1.bam FBtr0079596 73 13 F 21.0 +input1.bam FBtr0079596 73 53 F 20.0 input1.bam FBtr0079596 73 54 F 19.5 input1.bam FBtr0079596 73 73 F 0 input1.bam FBtr0079677 72 1 F 23.0 input1.bam FBtr0079677 72 5 F 19.0 input1.bam FBtr0079677 72 52 F 19.0 -input1.bam FBtr0079677 72 53 F 18.0 input1.bam FBtr0079677 72 72 F 0 -input1.bam FBtr0079690 72 1 F 15.0 -input1.bam FBtr0079690 72 22 F 15.0 +input1.bam FBtr0079690 72 1 F 0 input1.bam FBtr0079690 72 27 F 25.0 -input1.bam FBtr0079690 72 33 F 16.0 input1.bam FBtr0079690 72 72 F 0 -input1.bam FBtr0079692 73 1 F 19.3 -input1.bam FBtr0079692 73 18 F 18.0 -input1.bam FBtr0079692 73 25 F 17.0 +input1.bam FBtr0079692 73 1 F 21.0 input1.bam FBtr0079692 73 32 F 20.0 input1.bam FBtr0079692 73 73 F 0 -input1.bam FBtr0079693 72 1 F 17.2 +input1.bam FBtr0079693 72 1 F 24.0 input1.bam FBtr0079693 72 25 F 23.0 input1.bam FBtr0079693 72 72 F 0 -input1.bam FBtr0079694 72 1 F 20.4 +input1.bam FBtr0079694 72 1 F 24.0 input1.bam FBtr0079694 72 18 F 19.0 -input1.bam FBtr0079694 72 52 F 17.0 input1.bam FBtr0079694 72 72 F 0 -input1.bam FBtr0079702 72 1 F 15.0 -input1.bam FBtr0079702 72 19 F 18.0 -input1.bam FBtr0079702 72 56 F 15.0 +input1.bam FBtr0079702 72 1 F 0 input1.bam FBtr0079702 72 72 F 0 -input1.bam FBtr0079728 72 1 F 16.0 +input1.bam FBtr0079728 72 1 F 0 input1.bam FBtr0079728 72 8 F 20.0 input1.bam FBtr0079728 72 19 F 24.0 -input1.bam FBtr0079728 72 33 F 15.7 -input1.bam FBtr0079728 72 56 F 15.0 input1.bam FBtr0079728 72 72 F 0 -input1.bam FBtr0079729 72 1 F 15.0 +input1.bam FBtr0079729 72 1 F 0 input1.bam FBtr0079729 72 13 F 22.0 -input1.bam FBtr0079729 72 52 F 18.0 -input1.bam FBtr0079729 72 57 F 16.0 input1.bam FBtr0079729 72 72 F 0 -input1.bam FBtr0079752 72 1 F 19.5 +input1.bam FBtr0079752 72 1 F 24.0 input1.bam FBtr0079752 72 7 F 20.0 -input1.bam FBtr0079752 72 12 F 16.0 -input1.bam FBtr0079752 72 33 F 16.0 input1.bam FBtr0079752 72 52 F 19.5 input1.bam FBtr0079752 72 72 F 0 input1.bam FBtr0079820 74 1 F 0 input1.bam FBtr0079820 74 45 F 20.0 -input1.bam FBtr0079820 74 46 F 17.0 -input1.bam FBtr0079820 74 48 F 18.0 input1.bam FBtr0079820 74 49 F 24.0 input1.bam FBtr0079820 74 51 F 20.0 -input1.bam FBtr0079820 74 54 F 17.0 -input1.bam FBtr0079820 74 55 F 18.0 -input1.bam FBtr0079820 74 56 F 18.5 +input1.bam FBtr0079820 74 54 F 19.0 +input1.bam FBtr0079820 74 56 F 19.0 input1.bam FBtr0079820 74 74 F 0 -input1.bam FBtr0080609 72 1 F 18.8 +input1.bam FBtr0080609 72 1 F 22.3 input1.bam FBtr0080609 72 3 F 21.0 input1.bam FBtr0080609 72 4 F 20.0 input1.bam FBtr0080609 72 5 F 19.0 -input1.bam FBtr0080609 72 7 F 17.1 -input1.bam FBtr0080609 72 8 F 16.0 -input1.bam FBtr0080609 72 9 F 15.0 input1.bam FBtr0080609 72 12 F 23.0 input1.bam FBtr0080609 72 15 F 19.0 input1.bam FBtr0080609 72 16 F 23.0 -input1.bam FBtr0080609 72 17 F 20.5 +input1.bam FBtr0080609 72 17 F 24.0 input1.bam FBtr0080609 72 19 F 26.0 input1.bam FBtr0080609 72 20 F 25.0 input1.bam FBtr0080609 72 42 F 21.0 -input1.bam FBtr0080609 72 51 F 18.0 -input1.bam FBtr0080609 72 52 F 15.0 input1.bam FBtr0080609 72 72 F 0 input1.bam FBtr0080644 72 1 F 27.0 -input1.bam FBtr0080644 72 4 F 20.5 -input1.bam FBtr0080644 72 7 F 16.0 -input1.bam FBtr0080644 72 12 F 16.0 +input1.bam FBtr0080644 72 4 F 24.0 input1.bam FBtr0080644 72 72 F 0 -input1.bam FBtr0080646 72 1 F 16.0 +input1.bam FBtr0080646 72 1 F 0 input1.bam FBtr0080646 72 6 F 22.0 input1.bam FBtr0080646 72 7 F 21.0 input1.bam FBtr0080646 72 72 F 0 -input1.bam FBtr0080647 72 1 F 16.3 -input1.bam FBtr0080647 72 3 F 16.0 -input1.bam FBtr0080647 72 6 F 19.0 +input1.bam FBtr0080647 72 1 F 0 +input1.bam FBtr0080647 72 6 F 22.0 input1.bam FBtr0080647 72 8 F 20.0 -input1.bam FBtr0080647 72 11 F 17.0 -input1.bam FBtr0080647 72 12 F 16.0 input1.bam FBtr0080647 72 72 F 0 input1.bam FBtr0080660 72 1 F 0 input1.bam FBtr0080660 72 4 F 24.0 -input1.bam FBtr0080660 72 7 F 19.3 +input1.bam FBtr0080660 72 7 F 21.0 input1.bam FBtr0080660 72 72 F 0 -input1.bam FBtr0080663 71 1 F 18.8 +input1.bam FBtr0080663 71 1 F 26.0 input1.bam FBtr0080663 71 3 F 23.7 input1.bam FBtr0080663 71 4 F 23.3 -input1.bam FBtr0080663 71 7 F 16.0 -input1.bam FBtr0080663 71 8 F 19.3 -input1.bam FBtr0080663 71 12 F 16.0 +input1.bam FBtr0080663 71 8 F 19.7 input1.bam FBtr0080663 71 14 F 19.0 -input1.bam FBtr0080663 71 15 F 17.0 -input1.bam FBtr0080663 71 16 F 15.7 -input1.bam FBtr0080663 71 17 F 15.6 -input1.bam FBtr0080663 71 26 F 18.0 -input1.bam FBtr0080663 71 32 F 15.5 -input1.bam FBtr0080663 71 50 F 17.0 -input1.bam FBtr0080663 71 51 F 15.6 +input1.bam FBtr0080663 71 51 F 20.0 input1.bam FBtr0080663 71 71 F 0 -input1.bam FBtr0080664 71 1 F 19.5 +input1.bam FBtr0080664 71 1 F 24.7 input1.bam FBtr0080664 71 3 F 23.8 input1.bam FBtr0080664 71 4 F 23.5 input1.bam FBtr0080664 71 6 F 23.0 input1.bam FBtr0080664 71 7 F 21.0 input1.bam FBtr0080664 71 8 F 20.5 input1.bam FBtr0080664 71 9 F 20.0 -input1.bam FBtr0080664 71 11 F 16.7 -input1.bam FBtr0080664 71 12 F 18.0 +input1.bam FBtr0080664 71 12 F 20.0 input1.bam FBtr0080664 71 13 F 20.0 -input1.bam FBtr0080664 71 14 F 18.3 -input1.bam FBtr0080664 71 16 F 15.0 -input1.bam FBtr0080664 71 17 F 15.8 -input1.bam FBtr0080664 71 18 F 15.0 -input1.bam FBtr0080664 71 21 F 15.0 -input1.bam FBtr0080664 71 28 F 16.0 -input1.bam FBtr0080664 71 32 F 15.0 +input1.bam FBtr0080664 71 14 F 19.0 +input1.bam FBtr0080664 71 17 F 19.0 input1.bam FBtr0080664 71 33 F 20.0 -input1.bam FBtr0080664 71 34 F 16.0 -input1.bam FBtr0080664 71 35 F 15.0 input1.bam FBtr0080664 71 36 F 21.0 -input1.bam FBtr0080664 71 37 F 18.0 -input1.bam FBtr0080664 71 38 F 15.0 -input1.bam FBtr0080664 71 50 F 16.0 -input1.bam FBtr0080664 71 51 F 15.0 -input1.bam FBtr0080664 71 52 F 15.0 -input1.bam FBtr0080664 71 56 F 16.0 input1.bam FBtr0080664 71 71 F 0
--- a/test-data/input1_median.tab Wed Apr 10 06:38:33 2019 -0400 +++ b/test-data/input1_median.tab Sun Apr 14 14:43:44 2019 -0400 @@ -1,300 +1,190 @@ Dataset Chromosome Chrom_length Coordinate Polarity Median -input1.bam FBtr0070001 72 1 F 17.0 +input1.bam FBtr0070001 72 1 F 0 input1.bam FBtr0070001 72 7 F 21.0 input1.bam FBtr0070001 72 8 F 21.0 input1.bam FBtr0070001 72 11 F 20.5 input1.bam FBtr0070001 72 16 F 19.0 input1.bam FBtr0070001 72 17 F 23.0 -input1.bam FBtr0070001 72 18 F 16.0 input1.bam FBtr0070001 72 27 F 23.5 input1.bam FBtr0070001 72 30 F 23.0 input1.bam FBtr0070001 72 31 F 23.0 input1.bam FBtr0070001 72 32 F 22.0 input1.bam FBtr0070001 72 34 F 20.0 input1.bam FBtr0070001 72 72 F 0 -input1.bam FBtr0070533 72 1 F 15.0 -input1.bam FBtr0070533 72 12 F 18.0 -input1.bam FBtr0070533 72 15 F 15.0 +input1.bam FBtr0070533 72 1 F 0 input1.bam FBtr0070533 72 19 F 22.0 input1.bam FBtr0070533 72 20 F 23.0 -input1.bam FBtr0070533 72 21 F 18.0 input1.bam FBtr0070533 72 22 F 20.0 -input1.bam FBtr0070533 72 25 F 17.0 -input1.bam FBtr0070533 72 26 F 16.0 input1.bam FBtr0070533 72 28 F 25.0 -input1.bam FBtr0070533 72 32 F 21.0 +input1.bam FBtr0070533 72 32 F 22.0 input1.bam FBtr0070533 72 35 F 19.0 input1.bam FBtr0070533 72 37 F 19.0 -input1.bam FBtr0070533 72 38 F 18.0 input1.bam FBtr0070533 72 72 F 0 -input1.bam FBtr0070603 72 1 F 16.5 +input1.bam FBtr0070603 72 1 F 0 input1.bam FBtr0070603 72 3 F 21.0 input1.bam FBtr0070603 72 4 F 20.0 -input1.bam FBtr0070603 72 6 F 18.0 -input1.bam FBtr0070603 72 7 F 17.0 -input1.bam FBtr0070603 72 8 F 16.0 -input1.bam FBtr0070603 72 9 F 15.0 -input1.bam FBtr0070603 72 12 F 20.0 +input1.bam FBtr0070603 72 12 F 23.0 input1.bam FBtr0070603 72 13 F 22.0 -input1.bam FBtr0070603 72 15 F 18.5 -input1.bam FBtr0070603 72 16 F 20.5 +input1.bam FBtr0070603 72 15 F 20.0 +input1.bam FBtr0070603 72 16 F 24.0 input1.bam FBtr0070603 72 17 F 25.0 -input1.bam FBtr0070603 72 18 F 16.0 input1.bam FBtr0070603 72 19 F 23.0 -input1.bam FBtr0070603 72 20 F 22.0 +input1.bam FBtr0070603 72 20 F 24.0 input1.bam FBtr0070603 72 21 F 25.0 input1.bam FBtr0070603 72 22 F 20.0 -input1.bam FBtr0070603 72 24 F 19.5 +input1.bam FBtr0070603 72 24 F 21.0 input1.bam FBtr0070603 72 25 F 23.0 input1.bam FBtr0070603 72 26 F 26.0 input1.bam FBtr0070603 72 27 F 26.0 input1.bam FBtr0070603 72 32 F 20.0 input1.bam FBtr0070603 72 34 F 20.0 -input1.bam FBtr0070603 72 38 F 18.0 input1.bam FBtr0070603 72 42 F 21.0 -input1.bam FBtr0070603 72 51 F 18.0 -input1.bam FBtr0070603 72 56 F 16.0 input1.bam FBtr0070603 72 72 F 0 -input1.bam FBtr0070604 72 1 F 15.0 +input1.bam FBtr0070604 72 1 F 0 input1.bam FBtr0070604 72 18 F 23.0 input1.bam FBtr0070604 72 22 F 19.0 -input1.bam FBtr0070604 72 30 F 18.0 input1.bam FBtr0070604 72 31 F 23.0 input1.bam FBtr0070604 72 32 F 22.0 -input1.bam FBtr0070604 72 57 F 15.0 input1.bam FBtr0070604 72 72 F 0 input1.bam FBtr0070911 73 1 F 0 input1.bam FBtr0070911 73 15 F 21.0 -input1.bam FBtr0070911 73 38 F 15.0 input1.bam FBtr0070911 73 73 F 0 input1.bam FBtr0078490 72 1 F 0 -input1.bam FBtr0078490 72 13 F 16.0 -input1.bam FBtr0078490 72 17 F 16.0 -input1.bam FBtr0078490 72 18 F 15.0 -input1.bam FBtr0078490 72 25 F 15.0 -input1.bam FBtr0078490 72 28 F 19.0 -input1.bam FBtr0078490 72 38 F 18.0 +input1.bam FBtr0078490 72 28 F 23.0 input1.bam FBtr0078490 72 72 F 0 -input1.bam FBtr0078580 72 1 F 15.0 +input1.bam FBtr0078580 72 1 F 25.0 input1.bam FBtr0078580 72 3 F 22.0 input1.bam FBtr0078580 72 4 F 25.0 input1.bam FBtr0078580 72 5 F 20.0 -input1.bam FBtr0078580 72 6 F 19.0 +input1.bam FBtr0078580 72 6 F 21.0 input1.bam FBtr0078580 72 7 F 22.0 -input1.bam FBtr0078580 72 8 F 18.0 +input1.bam FBtr0078580 72 8 F 19.0 input1.bam FBtr0078580 72 11 F 23.0 -input1.bam FBtr0078580 72 12 F 17.0 -input1.bam FBtr0078580 72 14 F 15.0 -input1.bam FBtr0078580 72 15 F 16.0 +input1.bam FBtr0078580 72 12 F 22.0 input1.bam FBtr0078580 72 16 F 19.0 -input1.bam FBtr0078580 72 17 F 17.0 input1.bam FBtr0078580 72 19 F 24.0 input1.bam FBtr0078580 72 20 F 21.0 input1.bam FBtr0078580 72 21 F 20.0 -input1.bam FBtr0078580 72 24 F 17.0 input1.bam FBtr0078580 72 25 F 27.5 -input1.bam FBtr0078580 72 29 F 17.0 -input1.bam FBtr0078580 72 31 F 17.0 -input1.bam FBtr0078580 72 52 F 16.0 input1.bam FBtr0078580 72 72 F 0 input1.bam FBtr0078790 73 1 F 19.0 -input1.bam FBtr0078790 73 17 F 16.0 input1.bam FBtr0078790 73 33 F 23.0 -input1.bam FBtr0078790 73 42 F 18.5 +input1.bam FBtr0078790 73 42 F 22.0 input1.bam FBtr0078790 73 44 F 19.5 -input1.bam FBtr0078790 73 46 F 17.0 -input1.bam FBtr0078790 73 47 F 18.0 input1.bam FBtr0078790 73 52 F 20.0 -input1.bam FBtr0078790 73 69 R 15.0 input1.bam FBtr0078790 73 73 F 0 -input1.bam FBtr0079064 72 1 F 15.0 +input1.bam FBtr0079064 72 1 F 0 input1.bam FBtr0079064 72 3 F 21.0 -input1.bam FBtr0079064 72 33 F 15.0 -input1.bam FBtr0079064 72 52 F 17.0 input1.bam FBtr0079064 72 72 F 0 -input1.bam FBtr0079090 72 1 F 21.5 +input1.bam FBtr0079090 72 1 F 28.0 input1.bam FBtr0079090 72 26 F 24.0 -input1.bam FBtr0079090 72 33 F 16.0 -input1.bam FBtr0079090 72 53 F 18.0 input1.bam FBtr0079090 72 56 R 21.0 input1.bam FBtr0079090 72 72 F 0 input1.bam FBtr0079338 73 1 F 0 -input1.bam FBtr0079338 73 12 F 17.0 -input1.bam FBtr0079338 73 13 F 17.5 -input1.bam FBtr0079338 73 14 F 15.0 -input1.bam FBtr0079338 73 17 F 15.0 -input1.bam FBtr0079338 73 25 F 16.0 +input1.bam FBtr0079338 73 13 F 19.0 input1.bam FBtr0079338 73 42 F 22.0 input1.bam FBtr0079338 73 43 F 21.0 -input1.bam FBtr0079338 73 46 F 18.0 input1.bam FBtr0079338 73 73 F 0 -input1.bam FBtr0079528 71 1 F 20.0 +input1.bam FBtr0079528 71 1 F 26.0 input1.bam FBtr0079528 71 3 F 24.0 input1.bam FBtr0079528 71 4 F 24.0 -input1.bam FBtr0079528 71 8 F 19.5 +input1.bam FBtr0079528 71 8 F 20.0 input1.bam FBtr0079528 71 10 F 21.0 -input1.bam FBtr0079528 71 11 F 19.0 -input1.bam FBtr0079528 71 13 F 16.0 -input1.bam FBtr0079528 71 14 F 18.5 -input1.bam FBtr0079528 71 16 F 15.0 -input1.bam FBtr0079528 71 17 F 15.0 +input1.bam FBtr0079528 71 11 F 22.0 +input1.bam FBtr0079528 71 14 F 19.0 input1.bam FBtr0079528 71 18 F 20.0 -input1.bam FBtr0079528 71 28 F 16.0 -input1.bam FBtr0079528 71 35 F 15.0 input1.bam FBtr0079528 71 36 F 20.0 -input1.bam FBtr0079528 71 37 F 18.0 -input1.bam FBtr0079528 71 51 F 15.0 input1.bam FBtr0079528 71 71 F 0 -input1.bam FBtr0079596 73 1 F 15.0 +input1.bam FBtr0079596 73 1 F 19.0 input1.bam FBtr0079596 73 3 F 23.0 input1.bam FBtr0079596 73 4 F 22.0 -input1.bam FBtr0079596 73 5 F 18.5 -input1.bam FBtr0079596 73 6 F 18.0 -input1.bam FBtr0079596 73 8 F 17.0 -input1.bam FBtr0079596 73 9 F 16.0 -input1.bam FBtr0079596 73 10 F 15.0 -input1.bam FBtr0079596 73 11 F 15.0 -input1.bam FBtr0079596 73 12 F 17.0 -input1.bam FBtr0079596 73 13 F 16.0 -input1.bam FBtr0079596 73 14 F 15.0 -input1.bam FBtr0079596 73 15 F 18.0 -input1.bam FBtr0079596 73 16 F 17.0 -input1.bam FBtr0079596 73 17 F 16.0 -input1.bam FBtr0079596 73 18 F 15.0 -input1.bam FBtr0079596 73 19 F 15.0 -input1.bam FBtr0079596 73 53 F 18.5 +input1.bam FBtr0079596 73 5 F 19.0 +input1.bam FBtr0079596 73 6 F 19.0 +input1.bam FBtr0079596 73 13 F 21.0 +input1.bam FBtr0079596 73 53 F 20.0 input1.bam FBtr0079596 73 54 F 19.5 input1.bam FBtr0079596 73 73 F 0 input1.bam FBtr0079677 72 1 F 23.0 input1.bam FBtr0079677 72 5 F 19.0 input1.bam FBtr0079677 72 52 F 19.0 -input1.bam FBtr0079677 72 53 F 18.0 input1.bam FBtr0079677 72 72 F 0 -input1.bam FBtr0079690 72 1 F 15.0 -input1.bam FBtr0079690 72 22 F 15.0 +input1.bam FBtr0079690 72 1 F 0 input1.bam FBtr0079690 72 27 F 25.0 -input1.bam FBtr0079690 72 33 F 16.0 input1.bam FBtr0079690 72 72 F 0 -input1.bam FBtr0079692 73 1 F 19.0 -input1.bam FBtr0079692 73 18 F 18.0 -input1.bam FBtr0079692 73 25 F 17.0 +input1.bam FBtr0079692 73 1 F 21.0 input1.bam FBtr0079692 73 32 F 20.0 input1.bam FBtr0079692 73 73 F 0 -input1.bam FBtr0079693 72 1 F 15.0 +input1.bam FBtr0079693 72 1 F 24.0 input1.bam FBtr0079693 72 25 F 23.0 input1.bam FBtr0079693 72 72 F 0 -input1.bam FBtr0079694 72 1 F 23.0 +input1.bam FBtr0079694 72 1 F 24.0 input1.bam FBtr0079694 72 18 F 19.0 -input1.bam FBtr0079694 72 52 F 17.0 input1.bam FBtr0079694 72 72 F 0 -input1.bam FBtr0079702 72 1 F 15.0 -input1.bam FBtr0079702 72 19 F 18.0 -input1.bam FBtr0079702 72 56 F 15.0 +input1.bam FBtr0079702 72 1 F 0 input1.bam FBtr0079702 72 72 F 0 -input1.bam FBtr0079728 72 1 F 16.0 +input1.bam FBtr0079728 72 1 F 0 input1.bam FBtr0079728 72 8 F 20.0 input1.bam FBtr0079728 72 19 F 24.0 -input1.bam FBtr0079728 72 33 F 15.0 -input1.bam FBtr0079728 72 56 F 15.0 input1.bam FBtr0079728 72 72 F 0 -input1.bam FBtr0079729 72 1 F 15.0 +input1.bam FBtr0079729 72 1 F 0 input1.bam FBtr0079729 72 13 F 22.0 -input1.bam FBtr0079729 72 52 F 18.0 -input1.bam FBtr0079729 72 57 F 16.0 input1.bam FBtr0079729 72 72 F 0 -input1.bam FBtr0079752 72 1 F 19.5 +input1.bam FBtr0079752 72 1 F 24.0 input1.bam FBtr0079752 72 7 F 20.0 -input1.bam FBtr0079752 72 12 F 16.0 -input1.bam FBtr0079752 72 33 F 16.0 input1.bam FBtr0079752 72 52 F 19.5 input1.bam FBtr0079752 72 72 F 0 input1.bam FBtr0079820 74 1 F 0 input1.bam FBtr0079820 74 45 F 20.0 -input1.bam FBtr0079820 74 46 F 17.0 -input1.bam FBtr0079820 74 48 F 18.0 input1.bam FBtr0079820 74 49 F 24.0 input1.bam FBtr0079820 74 51 F 20.0 -input1.bam FBtr0079820 74 54 F 17.0 -input1.bam FBtr0079820 74 55 F 18.0 -input1.bam FBtr0079820 74 56 F 18.5 +input1.bam FBtr0079820 74 54 F 19.0 +input1.bam FBtr0079820 74 56 F 19.0 input1.bam FBtr0079820 74 74 F 0 -input1.bam FBtr0080609 72 1 F 18.0 +input1.bam FBtr0080609 72 1 F 23.0 input1.bam FBtr0080609 72 3 F 21.0 input1.bam FBtr0080609 72 4 F 20.0 input1.bam FBtr0080609 72 5 F 19.0 -input1.bam FBtr0080609 72 7 F 17.0 -input1.bam FBtr0080609 72 8 F 16.0 -input1.bam FBtr0080609 72 9 F 15.0 input1.bam FBtr0080609 72 12 F 23.0 input1.bam FBtr0080609 72 15 F 19.0 input1.bam FBtr0080609 72 16 F 23.0 -input1.bam FBtr0080609 72 17 F 20.5 +input1.bam FBtr0080609 72 17 F 24.0 input1.bam FBtr0080609 72 19 F 26.0 input1.bam FBtr0080609 72 20 F 25.0 input1.bam FBtr0080609 72 42 F 21.0 -input1.bam FBtr0080609 72 51 F 18.0 -input1.bam FBtr0080609 72 52 F 15.0 input1.bam FBtr0080609 72 72 F 0 input1.bam FBtr0080644 72 1 F 27.0 -input1.bam FBtr0080644 72 4 F 20.5 -input1.bam FBtr0080644 72 7 F 16.0 -input1.bam FBtr0080644 72 12 F 16.0 +input1.bam FBtr0080644 72 4 F 24.0 input1.bam FBtr0080644 72 72 F 0 -input1.bam FBtr0080646 72 1 F 16.0 +input1.bam FBtr0080646 72 1 F 0 input1.bam FBtr0080646 72 6 F 22.0 input1.bam FBtr0080646 72 7 F 21.0 input1.bam FBtr0080646 72 72 F 0 -input1.bam FBtr0080647 72 1 F 16.0 -input1.bam FBtr0080647 72 3 F 16.0 -input1.bam FBtr0080647 72 6 F 19.0 +input1.bam FBtr0080647 72 1 F 0 +input1.bam FBtr0080647 72 6 F 22.0 input1.bam FBtr0080647 72 8 F 20.0 -input1.bam FBtr0080647 72 11 F 17.0 -input1.bam FBtr0080647 72 12 F 16.0 input1.bam FBtr0080647 72 72 F 0 input1.bam FBtr0080660 72 1 F 0 input1.bam FBtr0080660 72 4 F 24.0 input1.bam FBtr0080660 72 7 F 21.0 input1.bam FBtr0080660 72 72 F 0 -input1.bam FBtr0080663 71 1 F 16.0 +input1.bam FBtr0080663 71 1 F 26.0 input1.bam FBtr0080663 71 3 F 24.0 input1.bam FBtr0080663 71 4 F 23.5 -input1.bam FBtr0080663 71 7 F 16.0 -input1.bam FBtr0080663 71 8 F 19.5 -input1.bam FBtr0080663 71 12 F 16.0 +input1.bam FBtr0080663 71 8 F 20.0 input1.bam FBtr0080663 71 14 F 19.0 -input1.bam FBtr0080663 71 15 F 17.0 -input1.bam FBtr0080663 71 16 F 16.0 -input1.bam FBtr0080663 71 17 F 15.0 -input1.bam FBtr0080663 71 26 F 18.0 -input1.bam FBtr0080663 71 32 F 15.5 -input1.bam FBtr0080663 71 50 F 17.0 -input1.bam FBtr0080663 71 51 F 15.0 +input1.bam FBtr0080663 71 51 F 20.0 input1.bam FBtr0080663 71 71 F 0 -input1.bam FBtr0080664 71 1 F 17.0 +input1.bam FBtr0080664 71 1 F 24.5 input1.bam FBtr0080664 71 3 F 24.0 input1.bam FBtr0080664 71 4 F 23.5 input1.bam FBtr0080664 71 6 F 23.0 input1.bam FBtr0080664 71 7 F 21.0 input1.bam FBtr0080664 71 8 F 20.0 input1.bam FBtr0080664 71 9 F 20.0 -input1.bam FBtr0080664 71 11 F 17.0 -input1.bam FBtr0080664 71 12 F 17.0 +input1.bam FBtr0080664 71 12 F 20.0 input1.bam FBtr0080664 71 13 F 20.0 -input1.bam FBtr0080664 71 14 F 18.0 -input1.bam FBtr0080664 71 16 F 15.0 -input1.bam FBtr0080664 71 17 F 15.5 -input1.bam FBtr0080664 71 18 F 15.0 -input1.bam FBtr0080664 71 21 F 15.0 -input1.bam FBtr0080664 71 28 F 16.0 -input1.bam FBtr0080664 71 32 F 15.0 +input1.bam FBtr0080664 71 14 F 19.0 +input1.bam FBtr0080664 71 17 F 19.0 input1.bam FBtr0080664 71 33 F 20.0 -input1.bam FBtr0080664 71 34 F 16.0 -input1.bam FBtr0080664 71 35 F 15.0 input1.bam FBtr0080664 71 36 F 21.0 -input1.bam FBtr0080664 71 37 F 18.0 -input1.bam FBtr0080664 71 38 F 15.0 -input1.bam FBtr0080664 71 50 F 16.0 -input1.bam FBtr0080664 71 51 F 15.0 -input1.bam FBtr0080664 71 52 F 15.0 -input1.bam FBtr0080664 71 56 F 16.0 input1.bam FBtr0080664 71 71 F 0
Binary file test-data/input1_min0_max10000_cluster0_ylimneg5_pos5_single_plot_counts.pdf has changed
--- a/test-data/input1_min20_max30_counts.tab Wed Apr 10 06:38:33 2019 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,171 +0,0 @@ -Dataset Chromosome Chrom_length Coordinate Polarity Counts -input1.bam FBtr0070001 72 1 F 0 -input1.bam FBtr0070001 72 7 F 5 -input1.bam FBtr0070001 72 8 F 3 -input1.bam FBtr0070001 72 11 F 2 -input1.bam FBtr0070001 72 17 F 1 -input1.bam FBtr0070001 72 27 F 2 -input1.bam FBtr0070001 72 30 F 1 -input1.bam FBtr0070001 72 31 F 11 -input1.bam FBtr0070001 72 32 F 27 -input1.bam FBtr0070001 72 34 F 1 -input1.bam FBtr0070001 72 72 F 0 -input1.bam FBtr0070533 72 1 F 0 -input1.bam FBtr0070533 72 19 F 5 -input1.bam FBtr0070533 72 20 F 1 -input1.bam FBtr0070533 72 22 F 1 -input1.bam FBtr0070533 72 28 F 1 -input1.bam FBtr0070533 72 32 F 3 -input1.bam FBtr0070533 72 72 F 0 -input1.bam FBtr0070603 72 1 F 0 -input1.bam FBtr0070603 72 3 F 1 -input1.bam FBtr0070603 72 4 F 1 -input1.bam FBtr0070603 72 12 F 1 -input1.bam FBtr0070603 72 13 F 1 -input1.bam FBtr0070603 72 15 F 1 -input1.bam FBtr0070603 72 16 F 1 -input1.bam FBtr0070603 72 17 F 3 -input1.bam FBtr0070603 72 19 F 8 -input1.bam FBtr0070603 72 20 F 2 -input1.bam FBtr0070603 72 21 F 1 -input1.bam FBtr0070603 72 22 F 2 -input1.bam FBtr0070603 72 24 F 1 -input1.bam FBtr0070603 72 25 F 1 -input1.bam FBtr0070603 72 26 F 6 -input1.bam FBtr0070603 72 27 F 3 -input1.bam FBtr0070603 72 32 F 1 -input1.bam FBtr0070603 72 34 F 2 -input1.bam FBtr0070603 72 42 F 1 -input1.bam FBtr0070603 72 72 F 0 -input1.bam FBtr0070604 72 1 F 0 -input1.bam FBtr0070604 72 18 F 1 -input1.bam FBtr0070604 72 31 F 9 -input1.bam FBtr0070604 72 32 F 24 -input1.bam FBtr0070604 72 72 F 0 -input1.bam FBtr0070911 73 1 F 0 -input1.bam FBtr0070911 73 15 F 1 -input1.bam FBtr0070911 73 73 F 0 -input1.bam FBtr0078490 72 1 F 0 -input1.bam FBtr0078490 72 28 F 1 -input1.bam FBtr0078490 72 72 F 0 -input1.bam FBtr0078580 72 1 F 417 -input1.bam FBtr0078580 72 3 F 3 -input1.bam FBtr0078580 72 4 F 4 -input1.bam FBtr0078580 72 5 F 4 -input1.bam FBtr0078580 72 6 F 2 -input1.bam FBtr0078580 72 7 F 1 -input1.bam FBtr0078580 72 11 F 1 -input1.bam FBtr0078580 72 12 F 2 -input1.bam FBtr0078580 72 16 F 1 -input1.bam FBtr0078580 72 19 F 1 -input1.bam FBtr0078580 72 20 F 2 -input1.bam FBtr0078580 72 21 F 4 -input1.bam FBtr0078580 72 25 F 2 -input1.bam FBtr0078580 72 72 F 0 -input1.bam FBtr0078790 73 1 F 0 -input1.bam FBtr0078790 73 33 F 1 -input1.bam FBtr0078790 73 42 F 2 -input1.bam FBtr0078790 73 44 F 1 -input1.bam FBtr0078790 73 52 F 1 -input1.bam FBtr0078790 73 73 F 0 -input1.bam FBtr0079064 72 1 F 0 -input1.bam FBtr0079064 72 3 F 1 -input1.bam FBtr0079064 72 72 F 0 -input1.bam FBtr0079090 72 1 F 1 -input1.bam FBtr0079090 72 26 F 1 -input1.bam FBtr0079090 72 56 R 1 -input1.bam FBtr0079090 72 72 F 0 -input1.bam FBtr0079338 73 1 F 0 -input1.bam FBtr0079338 73 42 F 8 -input1.bam FBtr0079338 73 43 F 1 -input1.bam FBtr0079338 73 73 F 0 -input1.bam FBtr0079528 71 1 F 10 -input1.bam FBtr0079528 71 3 F 54 -input1.bam FBtr0079528 71 4 F 2 -input1.bam FBtr0079528 71 8 F 2 -input1.bam FBtr0079528 71 10 F 1 -input1.bam FBtr0079528 71 11 F 1 -input1.bam FBtr0079528 71 18 F 3 -input1.bam FBtr0079528 71 36 F 1 -input1.bam FBtr0079528 71 71 F 0 -input1.bam FBtr0079596 73 1 F 0 -input1.bam FBtr0079596 73 3 F 11 -input1.bam FBtr0079596 73 4 F 30 -input1.bam FBtr0079596 73 13 F 1 -input1.bam FBtr0079596 73 53 F 1 -input1.bam FBtr0079596 73 54 F 1 -input1.bam FBtr0079596 73 73 F 0 -input1.bam FBtr0079677 72 1 F 1 -input1.bam FBtr0079677 72 72 F 0 -input1.bam FBtr0079690 72 1 F 0 -input1.bam FBtr0079690 72 27 F 1 -input1.bam FBtr0079690 72 72 F 0 -input1.bam FBtr0079692 73 1 F 1 -input1.bam FBtr0079692 73 32 F 1 -input1.bam FBtr0079692 73 73 F 0 -input1.bam FBtr0079693 72 1 F 1 -input1.bam FBtr0079693 72 25 F 1 -input1.bam FBtr0079693 72 72 F 0 -input1.bam FBtr0079694 72 1 F 3 -input1.bam FBtr0079694 72 72 F 0 -input1.bam FBtr0079702 72 1 F 0 -input1.bam FBtr0079702 72 72 F 0 -input1.bam FBtr0079728 72 1 F 0 -input1.bam FBtr0079728 72 8 F 1 -input1.bam FBtr0079728 72 19 F 1 -input1.bam FBtr0079728 72 72 F 0 -input1.bam FBtr0079729 72 1 F 0 -input1.bam FBtr0079729 72 13 F 1 -input1.bam FBtr0079729 72 72 F 0 -input1.bam FBtr0079752 72 1 F 1 -input1.bam FBtr0079752 72 7 F 1 -input1.bam FBtr0079752 72 52 F 1 -input1.bam FBtr0079752 72 72 F 0 -input1.bam FBtr0079820 74 1 F 0 -input1.bam FBtr0079820 74 45 F 1 -input1.bam FBtr0079820 74 49 F 1 -input1.bam FBtr0079820 74 51 F 1 -input1.bam FBtr0079820 74 74 F 0 -input1.bam FBtr0080609 72 1 F 3 -input1.bam FBtr0080609 72 3 F 2 -input1.bam FBtr0080609 72 4 F 10 -input1.bam FBtr0080609 72 12 F 1 -input1.bam FBtr0080609 72 16 F 1 -input1.bam FBtr0080609 72 17 F 1 -input1.bam FBtr0080609 72 19 F 1 -input1.bam FBtr0080609 72 20 F 1 -input1.bam FBtr0080609 72 42 F 1 -input1.bam FBtr0080609 72 72 F 0 -input1.bam FBtr0080644 72 1 F 1 -input1.bam FBtr0080644 72 4 F 1 -input1.bam FBtr0080644 72 72 F 0 -input1.bam FBtr0080646 72 1 F 0 -input1.bam FBtr0080646 72 6 F 1 -input1.bam FBtr0080646 72 7 F 1 -input1.bam FBtr0080646 72 72 F 0 -input1.bam FBtr0080647 72 1 F 0 -input1.bam FBtr0080647 72 6 F 1 -input1.bam FBtr0080647 72 8 F 1 -input1.bam FBtr0080647 72 72 F 0 -input1.bam FBtr0080660 72 1 F 0 -input1.bam FBtr0080660 72 4 F 4 -input1.bam FBtr0080660 72 7 F 2 -input1.bam FBtr0080660 72 72 F 0 -input1.bam FBtr0080663 71 1 F 6 -input1.bam FBtr0080663 71 3 F 56 -input1.bam FBtr0080663 71 4 F 4 -input1.bam FBtr0080663 71 8 F 2 -input1.bam FBtr0080663 71 51 F 1 -input1.bam FBtr0080663 71 71 F 0 -input1.bam FBtr0080664 71 1 F 6 -input1.bam FBtr0080664 71 3 F 56 -input1.bam FBtr0080664 71 4 F 4 -input1.bam FBtr0080664 71 6 F 1 -input1.bam FBtr0080664 71 7 F 1 -input1.bam FBtr0080664 71 8 F 3 -input1.bam FBtr0080664 71 9 F 1 -input1.bam FBtr0080664 71 12 F 1 -input1.bam FBtr0080664 71 13 F 2 -input1.bam FBtr0080664 71 33 F 1 -input1.bam FBtr0080664 71 36 F 1 -input1.bam FBtr0080664 71 71 F 0
--- a/test-data/input1_min20_max30_size.tab Wed Apr 10 06:38:33 2019 -0400 +++ b/test-data/input1_min20_max30_size.tab Sun Apr 14 14:43:44 2019 -0400 @@ -1,265 +1,342 @@ Dataset Chromosome Polarity Size Counts Strandness z-score -input1.bam FBtr0070001 F 20 4 1.0 -0.63673824446 -input1.bam FBtr0070001 F 21 4 1.0 -0.63673824446 -input1.bam FBtr0070001 F 22 29 1.0 1.77514904516 -input1.bam FBtr0070001 F 23 15 1.0 0.424492162973 -input1.bam FBtr0070001 F 24 1 1.0 -0.926164719215 -input1.bam FBtr0070001 R 20 0 1.0 -0.63673824446 -input1.bam FBtr0070001 R 21 0 1.0 -0.63673824446 -input1.bam FBtr0070001 R 22 0 1.0 1.77514904516 -input1.bam FBtr0070001 R 23 0 1.0 0.424492162973 -input1.bam FBtr0070001 R 24 0 1.0 -0.926164719215 -input1.bam FBtr0070533 F 20 2 1.0 0.137360563949 -input1.bam FBtr0070533 F 21 2 1.0 0.137360563949 -input1.bam FBtr0070533 F 22 4 1.0 1.78568733133 -input1.bam FBtr0070533 F 23 2 1.0 0.137360563949 -input1.bam FBtr0070533 F 24 0 1.0 -1.51096620344 -input1.bam FBtr0070533 F 25 1 1.0 -0.686802819743 -input1.bam FBtr0070533 R 20 0 1.0 0.137360563949 -input1.bam FBtr0070533 R 21 0 1.0 0.137360563949 -input1.bam FBtr0070533 R 22 0 1.0 1.78568733133 -input1.bam FBtr0070533 R 23 0 1.0 0.137360563949 -input1.bam FBtr0070533 R 24 0 1.0 -1.51096620344 -input1.bam FBtr0070533 R 25 0 1.0 -0.686802819743 -input1.bam FBtr0070603 F 20 6 1.0 0.574195326069 -input1.bam FBtr0070603 F 21 3 1.0 -0.678594476263 -input1.bam FBtr0070603 F 22 3 1.0 -0.678594476263 -input1.bam FBtr0070603 F 23 10 1.0 2.24458172918 -input1.bam FBtr0070603 F 24 2 1.0 -1.09619107704 -input1.bam FBtr0070603 F 25 5 1.0 0.156598725292 -input1.bam FBtr0070603 F 26 5 1.0 0.156598725292 -input1.bam FBtr0070603 F 27 3 1.0 -0.678594476263 -input1.bam FBtr0070603 R 20 0 1.0 0.574195326069 -input1.bam FBtr0070603 R 21 0 1.0 -0.678594476263 -input1.bam FBtr0070603 R 22 0 1.0 -0.678594476263 -input1.bam FBtr0070603 R 23 0 1.0 2.24458172918 -input1.bam FBtr0070603 R 24 0 1.0 -1.09619107704 -input1.bam FBtr0070603 R 25 0 1.0 0.156598725292 -input1.bam FBtr0070603 R 26 0 1.0 0.156598725292 -input1.bam FBtr0070603 R 27 0 1.0 -0.678594476263 -input1.bam FBtr0070604 F 21 1 1.0 -1.14423087931 -input1.bam FBtr0070604 F 22 23 1.0 1.29187357342 -input1.bam FBtr0070604 F 23 10 1.0 -0.147642694105 -input1.bam FBtr0070604 R 21 0 1.0 -1.14423087931 -input1.bam FBtr0070604 R 22 0 1.0 1.29187357342 -input1.bam FBtr0070604 R 23 0 1.0 -0.147642694105 -input1.bam FBtr0070911 F 21 1 1.0 0 -input1.bam FBtr0070911 R 21 0 1.0 0 -input1.bam FBtr0078490 F 23 1 1.0 0 -input1.bam FBtr0078490 R 23 0 1.0 0 -input1.bam FBtr0078580 F 20 9 1.0 -0.511163173122 -input1.bam FBtr0078580 F 21 5 1.0 -0.561857041531 -input1.bam FBtr0078580 F 22 13 1.0 -0.460469304713 -input1.bam FBtr0078580 F 23 5 1.0 -0.561857041531 -input1.bam FBtr0078580 F 24 180 1.0 1.65599970135 -input1.bam FBtr0078580 F 25 212 1.0 2.06155064863 -input1.bam FBtr0078580 F 26 1 1.0 -0.61255090994 -input1.bam FBtr0078580 F 27 2 1.0 -0.599877442838 -input1.bam FBtr0078580 F 28 17 1.0 -0.409775436305 -input1.bam FBtr0078580 R 20 0 1.0 -0.511163173122 -input1.bam FBtr0078580 R 21 0 1.0 -0.561857041531 -input1.bam FBtr0078580 R 22 0 1.0 -0.460469304713 -input1.bam FBtr0078580 R 23 0 1.0 -0.561857041531 -input1.bam FBtr0078580 R 24 0 1.0 1.65599970135 -input1.bam FBtr0078580 R 25 0 1.0 2.06155064863 -input1.bam FBtr0078580 R 26 0 1.0 -0.61255090994 -input1.bam FBtr0078580 R 27 0 1.0 -0.599877442838 -input1.bam FBtr0078580 R 28 0 1.0 -0.409775436305 -input1.bam FBtr0078790 F 20 2 1.0 0.904534033733 -input1.bam FBtr0078790 F 21 0 1.0 -1.50755672289 -input1.bam FBtr0078790 F 22 2 1.0 0.904534033733 -input1.bam FBtr0078790 F 23 1 1.0 -0.301511344578 -input1.bam FBtr0078790 R 20 0 1.0 0.904534033733 -input1.bam FBtr0078790 R 21 0 1.0 -1.50755672289 -input1.bam FBtr0078790 R 22 0 1.0 0.904534033733 -input1.bam FBtr0078790 R 23 0 1.0 -0.301511344578 -input1.bam FBtr0079064 F 21 1 1.0 0 -input1.bam FBtr0079064 R 21 0 1.0 0 -input1.bam FBtr0079090 F 21 0 0.666666666667 1.29099444874 -input1.bam FBtr0079090 F 22 0 0.666666666667 -0.774596669241 -input1.bam FBtr0079090 F 23 0 0.666666666667 -0.774596669241 -input1.bam FBtr0079090 F 24 1 0.666666666667 1.29099444874 -input1.bam FBtr0079090 F 25 0 0.666666666667 -0.774596669241 -input1.bam FBtr0079090 F 26 0 0.666666666667 -0.774596669241 -input1.bam FBtr0079090 F 27 0 0.666666666667 -0.774596669241 -input1.bam FBtr0079090 F 28 1 0.666666666667 1.29099444874 -input1.bam FBtr0079090 R 21 1 0.666666666667 1.29099444874 -input1.bam FBtr0079090 R 22 0 0.666666666667 -0.774596669241 -input1.bam FBtr0079090 R 23 0 0.666666666667 -0.774596669241 -input1.bam FBtr0079090 R 24 0 0.666666666667 1.29099444874 -input1.bam FBtr0079090 R 25 0 0.666666666667 -0.774596669241 -input1.bam FBtr0079090 R 26 0 0.666666666667 -0.774596669241 -input1.bam FBtr0079090 R 27 0 0.666666666667 -0.774596669241 -input1.bam FBtr0079090 R 28 0 0.666666666667 1.29099444874 -input1.bam FBtr0079338 F 21 3 1.0 -1.0 -input1.bam FBtr0079338 F 22 6 1.0 1.0 -input1.bam FBtr0079338 R 21 0 1.0 -1.0 -input1.bam FBtr0079338 R 22 0 1.0 1.0 -input1.bam FBtr0079528 F 20 12 1.0 0.457174252464 -input1.bam FBtr0079528 F 21 3 1.0 -0.437297111052 -input1.bam FBtr0079528 F 22 2 1.0 -0.53668281811 -input1.bam FBtr0079528 F 23 3 1.0 -0.437297111052 -input1.bam FBtr0079528 F 24 36 1.0 2.84243122184 -input1.bam FBtr0079528 F 25 8 1.0 0.0596314242344 -input1.bam FBtr0079528 F 26 5 1.0 -0.238525696938 -input1.bam FBtr0079528 F 27 2 1.0 -0.53668281811 -input1.bam FBtr0079528 F 28 2 1.0 -0.53668281811 -input1.bam FBtr0079528 F 29 1 1.0 -0.636068525167 -input1.bam FBtr0079528 R 20 0 1.0 0.457174252464 -input1.bam FBtr0079528 R 21 0 1.0 -0.437297111052 -input1.bam FBtr0079528 R 22 0 1.0 -0.53668281811 -input1.bam FBtr0079528 R 23 0 1.0 -0.437297111052 -input1.bam FBtr0079528 R 24 0 1.0 2.84243122184 -input1.bam FBtr0079528 R 25 0 1.0 0.0596314242344 -input1.bam FBtr0079528 R 26 0 1.0 -0.238525696938 -input1.bam FBtr0079528 R 27 0 1.0 -0.53668281811 -input1.bam FBtr0079528 R 28 0 1.0 -0.53668281811 -input1.bam FBtr0079528 R 29 0 1.0 -0.636068525167 -input1.bam FBtr0079596 F 20 13 1.0 1.30066495429 -input1.bam FBtr0079596 F 21 3 1.0 -0.433554984762 -input1.bam FBtr0079596 F 22 16 1.0 1.820930936 -input1.bam FBtr0079596 F 23 8 1.0 0.433554984762 -input1.bam FBtr0079596 F 24 0 1.0 -0.953820966477 -input1.bam FBtr0079596 F 25 0 1.0 -0.953820966477 -input1.bam FBtr0079596 F 26 3 1.0 -0.433554984762 -input1.bam FBtr0079596 F 27 1 1.0 -0.780398972572 -input1.bam FBtr0079596 R 20 0 1.0 1.30066495429 -input1.bam FBtr0079596 R 21 0 1.0 -0.433554984762 -input1.bam FBtr0079596 R 22 0 1.0 1.820930936 -input1.bam FBtr0079596 R 23 0 1.0 0.433554984762 -input1.bam FBtr0079596 R 24 0 1.0 -0.953820966477 -input1.bam FBtr0079596 R 25 0 1.0 -0.953820966477 -input1.bam FBtr0079596 R 26 0 1.0 -0.433554984762 -input1.bam FBtr0079596 R 27 0 1.0 -0.780398972572 -input1.bam FBtr0079677 F 23 1 1.0 0 -input1.bam FBtr0079677 R 23 0 1.0 0 -input1.bam FBtr0079690 F 25 1 1.0 0 -input1.bam FBtr0079690 R 25 0 1.0 0 -input1.bam FBtr0079692 F 20 1 1.0 1.0 -input1.bam FBtr0079692 F 21 0 1.0 -1.0 -input1.bam FBtr0079692 F 22 0 1.0 -1.0 -input1.bam FBtr0079692 F 23 1 1.0 1.0 -input1.bam FBtr0079692 R 20 0 1.0 1.0 -input1.bam FBtr0079692 R 21 0 1.0 -1.0 -input1.bam FBtr0079692 R 22 0 1.0 -1.0 -input1.bam FBtr0079692 R 23 0 1.0 1.0 -input1.bam FBtr0079693 F 23 1 1.0 0 -input1.bam FBtr0079693 F 24 1 1.0 0 -input1.bam FBtr0079693 R 23 0 1.0 0 -input1.bam FBtr0079693 R 24 0 1.0 0 -input1.bam FBtr0079694 F 23 1 1.0 0 -input1.bam FBtr0079694 F 24 1 1.0 0 -input1.bam FBtr0079694 F 25 1 1.0 0 -input1.bam FBtr0079694 R 23 0 1.0 0 -input1.bam FBtr0079694 R 24 0 1.0 0 -input1.bam FBtr0079694 R 25 0 1.0 0 -input1.bam FBtr0079702 F 10 0 2 0 -input1.bam FBtr0079702 R 10 0 2 0 -input1.bam FBtr0079728 F 20 1 1.0 1.22474487139 -input1.bam FBtr0079728 F 21 0 1.0 -0.816496580928 -input1.bam FBtr0079728 F 22 0 1.0 -0.816496580928 -input1.bam FBtr0079728 F 23 0 1.0 -0.816496580928 -input1.bam FBtr0079728 F 24 1 1.0 1.22474487139 -input1.bam FBtr0079728 R 20 0 1.0 1.22474487139 -input1.bam FBtr0079728 R 21 0 1.0 -0.816496580928 -input1.bam FBtr0079728 R 22 0 1.0 -0.816496580928 -input1.bam FBtr0079728 R 23 0 1.0 -0.816496580928 -input1.bam FBtr0079728 R 24 0 1.0 1.22474487139 -input1.bam FBtr0079729 F 22 1 1.0 0 -input1.bam FBtr0079729 R 22 0 1.0 0 -input1.bam FBtr0079752 F 20 2 1.0 1.75 -input1.bam FBtr0079752 F 21 0 1.0 -0.75 -input1.bam FBtr0079752 F 22 0 1.0 -0.75 -input1.bam FBtr0079752 F 23 0 1.0 -0.75 -input1.bam FBtr0079752 F 24 1 1.0 0.5 -input1.bam FBtr0079752 R 20 0 1.0 1.75 -input1.bam FBtr0079752 R 21 0 1.0 -0.75 -input1.bam FBtr0079752 R 22 0 1.0 -0.75 -input1.bam FBtr0079752 R 23 0 1.0 -0.75 -input1.bam FBtr0079752 R 24 0 1.0 0.5 -input1.bam FBtr0079820 F 20 2 1.0 1.75 -input1.bam FBtr0079820 F 21 0 1.0 -0.75 -input1.bam FBtr0079820 F 22 0 1.0 -0.75 -input1.bam FBtr0079820 F 23 0 1.0 -0.75 -input1.bam FBtr0079820 F 24 1 1.0 0.5 -input1.bam FBtr0079820 R 20 0 1.0 1.75 -input1.bam FBtr0079820 R 21 0 1.0 -0.75 -input1.bam FBtr0079820 R 22 0 1.0 -0.75 -input1.bam FBtr0079820 R 23 0 1.0 -0.75 -input1.bam FBtr0079820 R 24 0 1.0 0.5 -input1.bam FBtr0080609 F 20 10 1.0 2.18263347562 -input1.bam FBtr0080609 F 21 4 1.0 0.311804782231 -input1.bam FBtr0080609 F 22 0 1.0 -0.935414346693 -input1.bam FBtr0080609 F 23 4 1.0 0.311804782231 -input1.bam FBtr0080609 F 24 1 1.0 -0.623609564462 -input1.bam FBtr0080609 F 25 1 1.0 -0.623609564462 -input1.bam FBtr0080609 F 26 1 1.0 -0.623609564462 -input1.bam FBtr0080609 R 20 0 1.0 2.18263347562 -input1.bam FBtr0080609 R 21 0 1.0 0.311804782231 -input1.bam FBtr0080609 R 22 0 1.0 -0.935414346693 -input1.bam FBtr0080609 R 23 0 1.0 0.311804782231 -input1.bam FBtr0080609 R 24 0 1.0 -0.623609564462 -input1.bam FBtr0080609 R 25 0 1.0 -0.623609564462 -input1.bam FBtr0080609 R 26 0 1.0 -0.623609564462 -input1.bam FBtr0080644 F 24 1 1.0 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FBtr0080660 R 22 0 1.0 -0.904534033733 -input1.bam FBtr0080660 R 23 0 1.0 -0.904534033733 -input1.bam FBtr0080660 R 24 0 1.0 1.50755672289 -input1.bam FBtr0080663 F 20 10 1.0 0.2400980192 -input1.bam FBtr0080663 F 21 0 1.0 -0.788893491656 -input1.bam FBtr0080663 F 22 1 1.0 -0.68599434057 -input1.bam FBtr0080663 F 23 7 1.0 -0.068599434057 -input1.bam FBtr0080663 F 24 33 1.0 2.60677849417 -input1.bam FBtr0080663 F 25 10 1.0 0.2400980192 -input1.bam FBtr0080663 F 26 6 1.0 -0.171498585143 -input1.bam FBtr0080663 F 27 0 1.0 -0.788893491656 -input1.bam FBtr0080663 F 28 2 1.0 -0.583095189485 -input1.bam FBtr0080663 R 20 0 1.0 0.2400980192 -input1.bam FBtr0080663 R 21 0 1.0 -0.788893491656 -input1.bam FBtr0080663 R 22 0 1.0 -0.68599434057 -input1.bam FBtr0080663 R 23 0 1.0 -0.068599434057 -input1.bam FBtr0080663 R 24 0 1.0 2.60677849417 -input1.bam FBtr0080663 R 25 0 1.0 0.2400980192 -input1.bam FBtr0080663 R 26 0 1.0 -0.171498585143 -input1.bam FBtr0080663 R 27 0 1.0 -0.788893491656 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-input1.bam FBtr0080609 R 26 0 -input1.bam FBtr0080644 F 16 3 -input1.bam FBtr0080644 F 17 1 -input1.bam FBtr0080644 F 18 0 -input1.bam FBtr0080644 F 19 0 -input1.bam FBtr0080644 F 20 0 -input1.bam FBtr0080644 F 21 0 -input1.bam FBtr0080644 F 22 0 -input1.bam FBtr0080644 F 23 0 -input1.bam FBtr0080644 F 24 1 -input1.bam FBtr0080644 F 25 0 -input1.bam FBtr0080644 F 26 0 -input1.bam FBtr0080644 F 27 1 -input1.bam FBtr0080644 R 16 0 -input1.bam FBtr0080644 R 17 0 -input1.bam FBtr0080644 R 18 0 -input1.bam FBtr0080644 R 19 0 -input1.bam FBtr0080644 R 20 0 -input1.bam FBtr0080644 R 21 0 -input1.bam FBtr0080644 R 22 0 -input1.bam FBtr0080644 R 23 0 -input1.bam FBtr0080644 R 24 0 -input1.bam FBtr0080644 R 25 0 -input1.bam FBtr0080644 R 26 0 -input1.bam FBtr0080644 R 27 0 -input1.bam FBtr0080646 F 16 1 -input1.bam FBtr0080646 F 17 0 -input1.bam FBtr0080646 F 18 0 -input1.bam FBtr0080646 F 19 0 -input1.bam FBtr0080646 F 20 0 -input1.bam FBtr0080646 F 21 1 -input1.bam FBtr0080646 F 22 1 -input1.bam FBtr0080646 R 16 0 -input1.bam FBtr0080646 R 17 0 -input1.bam FBtr0080646 R 18 0 -input1.bam FBtr0080646 R 19 0 -input1.bam FBtr0080646 R 20 0 -input1.bam FBtr0080646 R 21 0 -input1.bam FBtr0080646 R 22 0 -input1.bam FBtr0080647 F 15 1 -input1.bam FBtr0080647 F 16 4 -input1.bam FBtr0080647 F 17 2 -input1.bam FBtr0080647 F 18 1 -input1.bam FBtr0080647 F 19 0 -input1.bam FBtr0080647 F 20 1 -input1.bam FBtr0080647 F 21 0 -input1.bam FBtr0080647 F 22 1 -input1.bam FBtr0080647 R 15 0 -input1.bam FBtr0080647 R 16 0 -input1.bam FBtr0080647 R 17 0 -input1.bam FBtr0080647 R 18 0 -input1.bam FBtr0080647 R 19 0 -input1.bam FBtr0080647 R 20 0 -input1.bam FBtr0080647 R 21 0 -input1.bam FBtr0080647 R 22 0 -input1.bam FBtr0080660 F 16 1 -input1.bam FBtr0080660 F 17 0 -input1.bam FBtr0080660 F 18 0 -input1.bam FBtr0080660 F 19 0 -input1.bam FBtr0080660 F 20 0 -input1.bam FBtr0080660 F 21 2 -input1.bam FBtr0080660 F 22 0 -input1.bam FBtr0080660 F 23 0 -input1.bam FBtr0080660 F 24 4 -input1.bam FBtr0080660 R 16 0 -input1.bam FBtr0080660 R 17 0 -input1.bam FBtr0080660 R 18 0 -input1.bam FBtr0080660 R 19 0 -input1.bam FBtr0080660 R 20 0 -input1.bam FBtr0080660 R 21 0 -input1.bam FBtr0080660 R 22 0 -input1.bam FBtr0080660 R 23 0 -input1.bam FBtr0080660 R 24 0 -input1.bam FBtr0080663 F 15 18 -input1.bam FBtr0080663 F 16 16 -input1.bam FBtr0080663 F 17 6 -input1.bam FBtr0080663 F 18 3 -input1.bam FBtr0080663 F 19 3 -input1.bam FBtr0080663 F 20 10 -input1.bam FBtr0080663 F 21 0 -input1.bam FBtr0080663 F 22 1 -input1.bam FBtr0080663 F 23 7 -input1.bam FBtr0080663 F 24 33 -input1.bam FBtr0080663 F 25 10 -input1.bam FBtr0080663 F 26 6 -input1.bam FBtr0080663 F 27 0 -input1.bam FBtr0080663 F 28 2 -input1.bam FBtr0080663 R 15 0 -input1.bam FBtr0080663 R 16 0 -input1.bam FBtr0080663 R 17 0 -input1.bam FBtr0080663 R 18 0 -input1.bam FBtr0080663 R 19 0 -input1.bam FBtr0080663 R 20 0 -input1.bam FBtr0080663 R 21 0 -input1.bam FBtr0080663 R 22 0 -input1.bam FBtr0080663 R 23 0 -input1.bam FBtr0080663 R 24 0 -input1.bam FBtr0080663 R 25 0 -input1.bam FBtr0080663 R 26 0 -input1.bam FBtr0080663 R 27 0 -input1.bam FBtr0080663 R 28 0 -input1.bam FBtr0080664 F 15 22 -input1.bam FBtr0080664 F 16 15 -input1.bam FBtr0080664 F 17 6 -input1.bam FBtr0080664 F 18 5 -input1.bam FBtr0080664 F 19 3 -input1.bam FBtr0080664 F 20 12 -input1.bam FBtr0080664 F 21 5 -input1.bam FBtr0080664 F 22 0 -input1.bam FBtr0080664 F 23 11 -input1.bam FBtr0080664 F 24 33 -input1.bam FBtr0080664 F 25 10 -input1.bam FBtr0080664 F 26 4 -input1.bam FBtr0080664 F 27 0 -input1.bam FBtr0080664 F 28 2 -input1.bam FBtr0080664 R 15 0 -input1.bam FBtr0080664 R 16 0 -input1.bam FBtr0080664 R 17 0 -input1.bam FBtr0080664 R 18 0 -input1.bam FBtr0080664 R 19 0 -input1.bam FBtr0080664 R 20 0 -input1.bam FBtr0080664 R 21 0 -input1.bam FBtr0080664 R 22 0 -input1.bam FBtr0080664 R 23 0 -input1.bam FBtr0080664 R 24 0 -input1.bam FBtr0080664 R 25 0 -input1.bam FBtr0080664 R 26 0 -input1.bam FBtr0080664 R 27 0 -input1.bam FBtr0080664 R 28 0
--- a/test-data/input_single_chr_x_6_single_plot_coverage.tab Wed Apr 10 06:38:33 2019 -0400 +++ b/test-data/input_single_chr_x_6_single_plot_coverage.tab Sun Apr 14 14:43:44 2019 -0400 @@ -1,481 +1,13 @@ Dataset Chromosome Chrom_length Coordinate Polarity Coverage -input_single_chr.bam_0 1 80 1 F 1 -input_single_chr.bam_0 1 80 2 F 1 -input_single_chr.bam_0 1 80 3 F 1 -input_single_chr.bam_0 1 80 4 F 1 -input_single_chr.bam_0 1 80 5 F 1 -input_single_chr.bam_0 1 80 6 F 1 -input_single_chr.bam_0 1 80 7 F 1 -input_single_chr.bam_0 1 80 8 F 1 -input_single_chr.bam_0 1 80 9 F 1 -input_single_chr.bam_0 1 80 10 F 1 -input_single_chr.bam_0 1 80 11 F 1 -input_single_chr.bam_0 1 80 12 F 1 -input_single_chr.bam_0 1 80 13 F 1 -input_single_chr.bam_0 1 80 14 F 1 -input_single_chr.bam_0 1 80 15 F 1 -input_single_chr.bam_0 1 80 16 F 1 -input_single_chr.bam_0 1 80 17 F 1 -input_single_chr.bam_0 1 80 18 F 1 -input_single_chr.bam_0 1 80 19 F 1 -input_single_chr.bam_0 1 80 20 F 1 -input_single_chr.bam_0 1 80 21 F 1 -input_single_chr.bam_0 1 80 22 F 1 -input_single_chr.bam_0 1 80 23 F 1 -input_single_chr.bam_0 1 80 24 F 1 -input_single_chr.bam_0 1 80 25 F 1 -input_single_chr.bam_0 1 80 26 F 1 -input_single_chr.bam_0 1 80 27 F 1 -input_single_chr.bam_0 1 80 28 F 1 -input_single_chr.bam_0 1 80 29 F 1 -input_single_chr.bam_0 1 80 30 F 1 -input_single_chr.bam_0 1 80 31 F 1 -input_single_chr.bam_0 1 80 32 F 1 -input_single_chr.bam_0 1 80 33 F 1 -input_single_chr.bam_0 1 80 34 F 1 -input_single_chr.bam_0 1 80 35 F 1 -input_single_chr.bam_0 1 80 36 F 1 -input_single_chr.bam_0 1 80 37 F 1 -input_single_chr.bam_0 1 80 38 F 1 -input_single_chr.bam_0 1 80 39 F 1 -input_single_chr.bam_0 1 80 40 F 1 -input_single_chr.bam_0 1 80 41 F 1 -input_single_chr.bam_0 1 80 42 F 1 -input_single_chr.bam_0 1 80 43 F 1 -input_single_chr.bam_0 1 80 44 F 1 -input_single_chr.bam_0 1 80 45 F 1 -input_single_chr.bam_0 1 80 46 F 1 -input_single_chr.bam_0 1 80 47 F 1 -input_single_chr.bam_0 1 80 48 F 1 -input_single_chr.bam_0 1 80 49 F 1 -input_single_chr.bam_0 1 80 50 F 1 -input_single_chr.bam_0 1 80 51 F 1 -input_single_chr.bam_0 1 80 52 F 1 -input_single_chr.bam_0 1 80 53 F 1 -input_single_chr.bam_0 1 80 54 F 1 -input_single_chr.bam_0 1 80 55 F 1 -input_single_chr.bam_0 1 80 56 F 1 -input_single_chr.bam_0 1 80 57 F 1 -input_single_chr.bam_0 1 80 58 F 1 -input_single_chr.bam_0 1 80 59 F 1 -input_single_chr.bam_0 1 80 60 F 1 -input_single_chr.bam_0 1 80 61 F 1 -input_single_chr.bam_0 1 80 62 F 1 -input_single_chr.bam_0 1 80 63 F 1 -input_single_chr.bam_0 1 80 64 F 1 -input_single_chr.bam_0 1 80 65 F 1 -input_single_chr.bam_0 1 80 66 F 1 -input_single_chr.bam_0 1 80 67 F 1 -input_single_chr.bam_0 1 80 68 F 1 -input_single_chr.bam_0 1 80 69 F 1 -input_single_chr.bam_0 1 80 70 F 1 -input_single_chr.bam_0 1 80 71 F 1 -input_single_chr.bam_0 1 80 72 F 1 -input_single_chr.bam_0 1 80 73 F 1 -input_single_chr.bam_0 1 80 74 F 1 -input_single_chr.bam_0 1 80 75 F 1 -input_single_chr.bam_0 1 80 76 F 1 -input_single_chr.bam_0 1 80 77 F 1 -input_single_chr.bam_0 1 80 78 F 1 -input_single_chr.bam_0 1 80 79 F 1 -input_single_chr.bam_0 1 80 80 F 1 -input_single_chr.bam_1 1 80 1 F 1 -input_single_chr.bam_1 1 80 2 F 1 -input_single_chr.bam_1 1 80 3 F 1 -input_single_chr.bam_1 1 80 4 F 1 -input_single_chr.bam_1 1 80 5 F 1 -input_single_chr.bam_1 1 80 6 F 1 -input_single_chr.bam_1 1 80 7 F 1 -input_single_chr.bam_1 1 80 8 F 1 -input_single_chr.bam_1 1 80 9 F 1 -input_single_chr.bam_1 1 80 10 F 1 -input_single_chr.bam_1 1 80 11 F 1 -input_single_chr.bam_1 1 80 12 F 1 -input_single_chr.bam_1 1 80 13 F 1 -input_single_chr.bam_1 1 80 14 F 1 -input_single_chr.bam_1 1 80 15 F 1 -input_single_chr.bam_1 1 80 16 F 1 -input_single_chr.bam_1 1 80 17 F 1 -input_single_chr.bam_1 1 80 18 F 1 -input_single_chr.bam_1 1 80 19 F 1 -input_single_chr.bam_1 1 80 20 F 1 -input_single_chr.bam_1 1 80 21 F 1 -input_single_chr.bam_1 1 80 22 F 1 -input_single_chr.bam_1 1 80 23 F 1 -input_single_chr.bam_1 1 80 24 F 1 -input_single_chr.bam_1 1 80 25 F 1 -input_single_chr.bam_1 1 80 26 F 1 -input_single_chr.bam_1 1 80 27 F 1 -input_single_chr.bam_1 1 80 28 F 1 -input_single_chr.bam_1 1 80 29 F 1 -input_single_chr.bam_1 1 80 30 F 1 -input_single_chr.bam_1 1 80 31 F 1 -input_single_chr.bam_1 1 80 32 F 1 -input_single_chr.bam_1 1 80 33 F 1 -input_single_chr.bam_1 1 80 34 F 1 -input_single_chr.bam_1 1 80 35 F 1 -input_single_chr.bam_1 1 80 36 F 1 -input_single_chr.bam_1 1 80 37 F 1 -input_single_chr.bam_1 1 80 38 F 1 -input_single_chr.bam_1 1 80 39 F 1 -input_single_chr.bam_1 1 80 40 F 1 -input_single_chr.bam_1 1 80 41 F 1 -input_single_chr.bam_1 1 80 42 F 1 -input_single_chr.bam_1 1 80 43 F 1 -input_single_chr.bam_1 1 80 44 F 1 -input_single_chr.bam_1 1 80 45 F 1 -input_single_chr.bam_1 1 80 46 F 1 -input_single_chr.bam_1 1 80 47 F 1 -input_single_chr.bam_1 1 80 48 F 1 -input_single_chr.bam_1 1 80 49 F 1 -input_single_chr.bam_1 1 80 50 F 1 -input_single_chr.bam_1 1 80 51 F 1 -input_single_chr.bam_1 1 80 52 F 1 -input_single_chr.bam_1 1 80 53 F 1 -input_single_chr.bam_1 1 80 54 F 1 -input_single_chr.bam_1 1 80 55 F 1 -input_single_chr.bam_1 1 80 56 F 1 -input_single_chr.bam_1 1 80 57 F 1 -input_single_chr.bam_1 1 80 58 F 1 -input_single_chr.bam_1 1 80 59 F 1 -input_single_chr.bam_1 1 80 60 F 1 -input_single_chr.bam_1 1 80 61 F 1 -input_single_chr.bam_1 1 80 62 F 1 -input_single_chr.bam_1 1 80 63 F 1 -input_single_chr.bam_1 1 80 64 F 1 -input_single_chr.bam_1 1 80 65 F 1 -input_single_chr.bam_1 1 80 66 F 1 -input_single_chr.bam_1 1 80 67 F 1 -input_single_chr.bam_1 1 80 68 F 1 -input_single_chr.bam_1 1 80 69 F 1 -input_single_chr.bam_1 1 80 70 F 1 -input_single_chr.bam_1 1 80 71 F 1 -input_single_chr.bam_1 1 80 72 F 1 -input_single_chr.bam_1 1 80 73 F 1 -input_single_chr.bam_1 1 80 74 F 1 -input_single_chr.bam_1 1 80 75 F 1 -input_single_chr.bam_1 1 80 76 F 1 -input_single_chr.bam_1 1 80 77 F 1 -input_single_chr.bam_1 1 80 78 F 1 -input_single_chr.bam_1 1 80 79 F 1 -input_single_chr.bam_1 1 80 80 F 1 -input_single_chr.bam_2 1 80 1 F 1 -input_single_chr.bam_2 1 80 2 F 1 -input_single_chr.bam_2 1 80 3 F 1 -input_single_chr.bam_2 1 80 4 F 1 -input_single_chr.bam_2 1 80 5 F 1 -input_single_chr.bam_2 1 80 6 F 1 -input_single_chr.bam_2 1 80 7 F 1 -input_single_chr.bam_2 1 80 8 F 1 -input_single_chr.bam_2 1 80 9 F 1 -input_single_chr.bam_2 1 80 10 F 1 -input_single_chr.bam_2 1 80 11 F 1 -input_single_chr.bam_2 1 80 12 F 1 -input_single_chr.bam_2 1 80 13 F 1 -input_single_chr.bam_2 1 80 14 F 1 -input_single_chr.bam_2 1 80 15 F 1 -input_single_chr.bam_2 1 80 16 F 1 -input_single_chr.bam_2 1 80 17 F 1 -input_single_chr.bam_2 1 80 18 F 1 -input_single_chr.bam_2 1 80 19 F 1 -input_single_chr.bam_2 1 80 20 F 1 -input_single_chr.bam_2 1 80 21 F 1 -input_single_chr.bam_2 1 80 22 F 1 -input_single_chr.bam_2 1 80 23 F 1 -input_single_chr.bam_2 1 80 24 F 1 -input_single_chr.bam_2 1 80 25 F 1 -input_single_chr.bam_2 1 80 26 F 1 -input_single_chr.bam_2 1 80 27 F 1 -input_single_chr.bam_2 1 80 28 F 1 -input_single_chr.bam_2 1 80 29 F 1 -input_single_chr.bam_2 1 80 30 F 1 -input_single_chr.bam_2 1 80 31 F 1 -input_single_chr.bam_2 1 80 32 F 1 -input_single_chr.bam_2 1 80 33 F 1 -input_single_chr.bam_2 1 80 34 F 1 -input_single_chr.bam_2 1 80 35 F 1 -input_single_chr.bam_2 1 80 36 F 1 -input_single_chr.bam_2 1 80 37 F 1 -input_single_chr.bam_2 1 80 38 F 1 -input_single_chr.bam_2 1 80 39 F 1 -input_single_chr.bam_2 1 80 40 F 1 -input_single_chr.bam_2 1 80 41 F 1 -input_single_chr.bam_2 1 80 42 F 1 -input_single_chr.bam_2 1 80 43 F 1 -input_single_chr.bam_2 1 80 44 F 1 -input_single_chr.bam_2 1 80 45 F 1 -input_single_chr.bam_2 1 80 46 F 1 -input_single_chr.bam_2 1 80 47 F 1 -input_single_chr.bam_2 1 80 48 F 1 -input_single_chr.bam_2 1 80 49 F 1 -input_single_chr.bam_2 1 80 50 F 1 -input_single_chr.bam_2 1 80 51 F 1 -input_single_chr.bam_2 1 80 52 F 1 -input_single_chr.bam_2 1 80 53 F 1 -input_single_chr.bam_2 1 80 54 F 1 -input_single_chr.bam_2 1 80 55 F 1 -input_single_chr.bam_2 1 80 56 F 1 -input_single_chr.bam_2 1 80 57 F 1 -input_single_chr.bam_2 1 80 58 F 1 -input_single_chr.bam_2 1 80 59 F 1 -input_single_chr.bam_2 1 80 60 F 1 -input_single_chr.bam_2 1 80 61 F 1 -input_single_chr.bam_2 1 80 62 F 1 -input_single_chr.bam_2 1 80 63 F 1 -input_single_chr.bam_2 1 80 64 F 1 -input_single_chr.bam_2 1 80 65 F 1 -input_single_chr.bam_2 1 80 66 F 1 -input_single_chr.bam_2 1 80 67 F 1 -input_single_chr.bam_2 1 80 68 F 1 -input_single_chr.bam_2 1 80 69 F 1 -input_single_chr.bam_2 1 80 70 F 1 -input_single_chr.bam_2 1 80 71 F 1 -input_single_chr.bam_2 1 80 72 F 1 -input_single_chr.bam_2 1 80 73 F 1 -input_single_chr.bam_2 1 80 74 F 1 -input_single_chr.bam_2 1 80 75 F 1 -input_single_chr.bam_2 1 80 76 F 1 -input_single_chr.bam_2 1 80 77 F 1 -input_single_chr.bam_2 1 80 78 F 1 -input_single_chr.bam_2 1 80 79 F 1 -input_single_chr.bam_2 1 80 80 F 1 -input_single_chr.bam_3 1 80 1 F 1 -input_single_chr.bam_3 1 80 2 F 1 -input_single_chr.bam_3 1 80 3 F 1 -input_single_chr.bam_3 1 80 4 F 1 -input_single_chr.bam_3 1 80 5 F 1 -input_single_chr.bam_3 1 80 6 F 1 -input_single_chr.bam_3 1 80 7 F 1 -input_single_chr.bam_3 1 80 8 F 1 -input_single_chr.bam_3 1 80 9 F 1 -input_single_chr.bam_3 1 80 10 F 1 -input_single_chr.bam_3 1 80 11 F 1 -input_single_chr.bam_3 1 80 12 F 1 -input_single_chr.bam_3 1 80 13 F 1 -input_single_chr.bam_3 1 80 14 F 1 -input_single_chr.bam_3 1 80 15 F 1 -input_single_chr.bam_3 1 80 16 F 1 -input_single_chr.bam_3 1 80 17 F 1 -input_single_chr.bam_3 1 80 18 F 1 -input_single_chr.bam_3 1 80 19 F 1 -input_single_chr.bam_3 1 80 20 F 1 -input_single_chr.bam_3 1 80 21 F 1 -input_single_chr.bam_3 1 80 22 F 1 -input_single_chr.bam_3 1 80 23 F 1 -input_single_chr.bam_3 1 80 24 F 1 -input_single_chr.bam_3 1 80 25 F 1 -input_single_chr.bam_3 1 80 26 F 1 -input_single_chr.bam_3 1 80 27 F 1 -input_single_chr.bam_3 1 80 28 F 1 -input_single_chr.bam_3 1 80 29 F 1 -input_single_chr.bam_3 1 80 30 F 1 -input_single_chr.bam_3 1 80 31 F 1 -input_single_chr.bam_3 1 80 32 F 1 -input_single_chr.bam_3 1 80 33 F 1 -input_single_chr.bam_3 1 80 34 F 1 -input_single_chr.bam_3 1 80 35 F 1 -input_single_chr.bam_3 1 80 36 F 1 -input_single_chr.bam_3 1 80 37 F 1 -input_single_chr.bam_3 1 80 38 F 1 -input_single_chr.bam_3 1 80 39 F 1 -input_single_chr.bam_3 1 80 40 F 1 -input_single_chr.bam_3 1 80 41 F 1 -input_single_chr.bam_3 1 80 42 F 1 -input_single_chr.bam_3 1 80 43 F 1 -input_single_chr.bam_3 1 80 44 F 1 -input_single_chr.bam_3 1 80 45 F 1 -input_single_chr.bam_3 1 80 46 F 1 -input_single_chr.bam_3 1 80 47 F 1 -input_single_chr.bam_3 1 80 48 F 1 -input_single_chr.bam_3 1 80 49 F 1 -input_single_chr.bam_3 1 80 50 F 1 -input_single_chr.bam_3 1 80 51 F 1 -input_single_chr.bam_3 1 80 52 F 1 -input_single_chr.bam_3 1 80 53 F 1 -input_single_chr.bam_3 1 80 54 F 1 -input_single_chr.bam_3 1 80 55 F 1 -input_single_chr.bam_3 1 80 56 F 1 -input_single_chr.bam_3 1 80 57 F 1 -input_single_chr.bam_3 1 80 58 F 1 -input_single_chr.bam_3 1 80 59 F 1 -input_single_chr.bam_3 1 80 60 F 1 -input_single_chr.bam_3 1 80 61 F 1 -input_single_chr.bam_3 1 80 62 F 1 -input_single_chr.bam_3 1 80 63 F 1 -input_single_chr.bam_3 1 80 64 F 1 -input_single_chr.bam_3 1 80 65 F 1 -input_single_chr.bam_3 1 80 66 F 1 -input_single_chr.bam_3 1 80 67 F 1 -input_single_chr.bam_3 1 80 68 F 1 -input_single_chr.bam_3 1 80 69 F 1 -input_single_chr.bam_3 1 80 70 F 1 -input_single_chr.bam_3 1 80 71 F 1 -input_single_chr.bam_3 1 80 72 F 1 -input_single_chr.bam_3 1 80 73 F 1 -input_single_chr.bam_3 1 80 74 F 1 -input_single_chr.bam_3 1 80 75 F 1 -input_single_chr.bam_3 1 80 76 F 1 -input_single_chr.bam_3 1 80 77 F 1 -input_single_chr.bam_3 1 80 78 F 1 -input_single_chr.bam_3 1 80 79 F 1 -input_single_chr.bam_3 1 80 80 F 1 -input_single_chr.bam_4 1 80 1 F 1 -input_single_chr.bam_4 1 80 2 F 1 -input_single_chr.bam_4 1 80 3 F 1 -input_single_chr.bam_4 1 80 4 F 1 -input_single_chr.bam_4 1 80 5 F 1 -input_single_chr.bam_4 1 80 6 F 1 -input_single_chr.bam_4 1 80 7 F 1 -input_single_chr.bam_4 1 80 8 F 1 -input_single_chr.bam_4 1 80 9 F 1 -input_single_chr.bam_4 1 80 10 F 1 -input_single_chr.bam_4 1 80 11 F 1 -input_single_chr.bam_4 1 80 12 F 1 -input_single_chr.bam_4 1 80 13 F 1 -input_single_chr.bam_4 1 80 14 F 1 -input_single_chr.bam_4 1 80 15 F 1 -input_single_chr.bam_4 1 80 16 F 1 -input_single_chr.bam_4 1 80 17 F 1 -input_single_chr.bam_4 1 80 18 F 1 -input_single_chr.bam_4 1 80 19 F 1 -input_single_chr.bam_4 1 80 20 F 1 -input_single_chr.bam_4 1 80 21 F 1 -input_single_chr.bam_4 1 80 22 F 1 -input_single_chr.bam_4 1 80 23 F 1 -input_single_chr.bam_4 1 80 24 F 1 -input_single_chr.bam_4 1 80 25 F 1 -input_single_chr.bam_4 1 80 26 F 1 -input_single_chr.bam_4 1 80 27 F 1 -input_single_chr.bam_4 1 80 28 F 1 -input_single_chr.bam_4 1 80 29 F 1 -input_single_chr.bam_4 1 80 30 F 1 -input_single_chr.bam_4 1 80 31 F 1 -input_single_chr.bam_4 1 80 32 F 1 -input_single_chr.bam_4 1 80 33 F 1 -input_single_chr.bam_4 1 80 34 F 1 -input_single_chr.bam_4 1 80 35 F 1 -input_single_chr.bam_4 1 80 36 F 1 -input_single_chr.bam_4 1 80 37 F 1 -input_single_chr.bam_4 1 80 38 F 1 -input_single_chr.bam_4 1 80 39 F 1 -input_single_chr.bam_4 1 80 40 F 1 -input_single_chr.bam_4 1 80 41 F 1 -input_single_chr.bam_4 1 80 42 F 1 -input_single_chr.bam_4 1 80 43 F 1 -input_single_chr.bam_4 1 80 44 F 1 -input_single_chr.bam_4 1 80 45 F 1 -input_single_chr.bam_4 1 80 46 F 1 -input_single_chr.bam_4 1 80 47 F 1 -input_single_chr.bam_4 1 80 48 F 1 -input_single_chr.bam_4 1 80 49 F 1 -input_single_chr.bam_4 1 80 50 F 1 -input_single_chr.bam_4 1 80 51 F 1 -input_single_chr.bam_4 1 80 52 F 1 -input_single_chr.bam_4 1 80 53 F 1 -input_single_chr.bam_4 1 80 54 F 1 -input_single_chr.bam_4 1 80 55 F 1 -input_single_chr.bam_4 1 80 56 F 1 -input_single_chr.bam_4 1 80 57 F 1 -input_single_chr.bam_4 1 80 58 F 1 -input_single_chr.bam_4 1 80 59 F 1 -input_single_chr.bam_4 1 80 60 F 1 -input_single_chr.bam_4 1 80 61 F 1 -input_single_chr.bam_4 1 80 62 F 1 -input_single_chr.bam_4 1 80 63 F 1 -input_single_chr.bam_4 1 80 64 F 1 -input_single_chr.bam_4 1 80 65 F 1 -input_single_chr.bam_4 1 80 66 F 1 -input_single_chr.bam_4 1 80 67 F 1 -input_single_chr.bam_4 1 80 68 F 1 -input_single_chr.bam_4 1 80 69 F 1 -input_single_chr.bam_4 1 80 70 F 1 -input_single_chr.bam_4 1 80 71 F 1 -input_single_chr.bam_4 1 80 72 F 1 -input_single_chr.bam_4 1 80 73 F 1 -input_single_chr.bam_4 1 80 74 F 1 -input_single_chr.bam_4 1 80 75 F 1 -input_single_chr.bam_4 1 80 76 F 1 -input_single_chr.bam_4 1 80 77 F 1 -input_single_chr.bam_4 1 80 78 F 1 -input_single_chr.bam_4 1 80 79 F 1 -input_single_chr.bam_4 1 80 80 F 1 -input_single_chr.bam_5 1 80 1 F 1 -input_single_chr.bam_5 1 80 2 F 1 -input_single_chr.bam_5 1 80 3 F 1 -input_single_chr.bam_5 1 80 4 F 1 -input_single_chr.bam_5 1 80 5 F 1 -input_single_chr.bam_5 1 80 6 F 1 -input_single_chr.bam_5 1 80 7 F 1 -input_single_chr.bam_5 1 80 8 F 1 -input_single_chr.bam_5 1 80 9 F 1 -input_single_chr.bam_5 1 80 10 F 1 -input_single_chr.bam_5 1 80 11 F 1 -input_single_chr.bam_5 1 80 12 F 1 -input_single_chr.bam_5 1 80 13 F 1 -input_single_chr.bam_5 1 80 14 F 1 -input_single_chr.bam_5 1 80 15 F 1 -input_single_chr.bam_5 1 80 16 F 1 -input_single_chr.bam_5 1 80 17 F 1 -input_single_chr.bam_5 1 80 18 F 1 -input_single_chr.bam_5 1 80 19 F 1 -input_single_chr.bam_5 1 80 20 F 1 -input_single_chr.bam_5 1 80 21 F 1 -input_single_chr.bam_5 1 80 22 F 1 -input_single_chr.bam_5 1 80 23 F 1 -input_single_chr.bam_5 1 80 24 F 1 -input_single_chr.bam_5 1 80 25 F 1 -input_single_chr.bam_5 1 80 26 F 1 -input_single_chr.bam_5 1 80 27 F 1 -input_single_chr.bam_5 1 80 28 F 1 -input_single_chr.bam_5 1 80 29 F 1 -input_single_chr.bam_5 1 80 30 F 1 -input_single_chr.bam_5 1 80 31 F 1 -input_single_chr.bam_5 1 80 32 F 1 -input_single_chr.bam_5 1 80 33 F 1 -input_single_chr.bam_5 1 80 34 F 1 -input_single_chr.bam_5 1 80 35 F 1 -input_single_chr.bam_5 1 80 36 F 1 -input_single_chr.bam_5 1 80 37 F 1 -input_single_chr.bam_5 1 80 38 F 1 -input_single_chr.bam_5 1 80 39 F 1 -input_single_chr.bam_5 1 80 40 F 1 -input_single_chr.bam_5 1 80 41 F 1 -input_single_chr.bam_5 1 80 42 F 1 -input_single_chr.bam_5 1 80 43 F 1 -input_single_chr.bam_5 1 80 44 F 1 -input_single_chr.bam_5 1 80 45 F 1 -input_single_chr.bam_5 1 80 46 F 1 -input_single_chr.bam_5 1 80 47 F 1 -input_single_chr.bam_5 1 80 48 F 1 -input_single_chr.bam_5 1 80 49 F 1 -input_single_chr.bam_5 1 80 50 F 1 -input_single_chr.bam_5 1 80 51 F 1 -input_single_chr.bam_5 1 80 52 F 1 -input_single_chr.bam_5 1 80 53 F 1 -input_single_chr.bam_5 1 80 54 F 1 -input_single_chr.bam_5 1 80 55 F 1 -input_single_chr.bam_5 1 80 56 F 1 -input_single_chr.bam_5 1 80 57 F 1 -input_single_chr.bam_5 1 80 58 F 1 -input_single_chr.bam_5 1 80 59 F 1 -input_single_chr.bam_5 1 80 60 F 1 -input_single_chr.bam_5 1 80 61 F 1 -input_single_chr.bam_5 1 80 62 F 1 -input_single_chr.bam_5 1 80 63 F 1 -input_single_chr.bam_5 1 80 64 F 1 -input_single_chr.bam_5 1 80 65 F 1 -input_single_chr.bam_5 1 80 66 F 1 -input_single_chr.bam_5 1 80 67 F 1 -input_single_chr.bam_5 1 80 68 F 1 -input_single_chr.bam_5 1 80 69 F 1 -input_single_chr.bam_5 1 80 70 F 1 -input_single_chr.bam_5 1 80 71 F 1 -input_single_chr.bam_5 1 80 72 F 1 -input_single_chr.bam_5 1 80 73 F 1 -input_single_chr.bam_5 1 80 74 F 1 -input_single_chr.bam_5 1 80 75 F 1 -input_single_chr.bam_5 1 80 76 F 1 -input_single_chr.bam_5 1 80 77 F 1 -input_single_chr.bam_5 1 80 78 F 1 -input_single_chr.bam_5 1 80 79 F 1 -input_single_chr.bam_5 1 80 80 F 1 +input_single_chr.bam_0 1 80 1 F 0 +input_single_chr.bam_0 1 80 80 F 0 +input_single_chr.bam_1 1 80 1 F 0 +input_single_chr.bam_1 1 80 80 F 0 +input_single_chr.bam_2 1 80 1 F 0 +input_single_chr.bam_2 1 80 80 F 0 +input_single_chr.bam_3 1 80 1 F 0 +input_single_chr.bam_3 1 80 80 F 0 +input_single_chr.bam_4 1 80 1 F 0 +input_single_chr.bam_4 1 80 80 F 0 +input_single_chr.bam_5 1 80 1 F 0 +input_single_chr.bam_5 1 80 80 F 0
--- a/test-data/size.tab Wed Apr 10 06:38:33 2019 -0400 +++ b/test-data/size.tab Sun Apr 14 14:43:44 2019 -0400 @@ -1,1045 +1,694 @@ Dataset Chromosome Polarity Size Counts Strandness z-score -input1.bam FBtr0070001 F 16 2 1.0 -0.476603123819 -input1.bam FBtr0070001 F 17 1 1.0 -0.586588460085 -input1.bam FBtr0070001 F 18 0 1.0 -0.696573796351 -input1.bam FBtr0070001 F 19 1 1.0 -0.586588460085 -input1.bam FBtr0070001 F 20 4 1.0 -0.256632451287 -input1.bam FBtr0070001 F 21 4 1.0 -0.256632451287 -input1.bam FBtr0070001 F 22 29 1.0 2.49300095536 -input1.bam FBtr0070001 F 23 15 1.0 0.953206247639 -input1.bam FBtr0070001 F 24 1 1.0 -0.586588460085 -input1.bam FBtr0070001 R 16 0 1.0 -0.476603123819 -input1.bam FBtr0070001 R 17 0 1.0 -0.586588460085 -input1.bam FBtr0070001 R 18 0 1.0 -0.696573796351 -input1.bam FBtr0070001 R 19 0 1.0 -0.586588460085 -input1.bam FBtr0070001 R 20 0 1.0 -0.256632451287 -input1.bam FBtr0070001 R 21 0 1.0 -0.256632451287 -input1.bam FBtr0070001 R 22 0 1.0 2.49300095536 -input1.bam FBtr0070001 R 23 0 1.0 0.953206247639 -input1.bam FBtr0070001 R 24 0 1.0 -0.586588460085 -input1.bam FBtr0070533 F 15 2 1.0 -0.114707866935 -input1.bam FBtr0070533 F 16 1 1.0 -0.745601135079 -input1.bam FBtr0070533 F 17 1 1.0 -0.745601135079 -input1.bam FBtr0070533 F 18 6 1.0 2.40886520564 -input1.bam FBtr0070533 F 19 3 1.0 0.516185401209 -input1.bam FBtr0070533 F 20 2 1.0 -0.114707866935 -input1.bam FBtr0070533 F 21 2 1.0 -0.114707866935 -input1.bam FBtr0070533 F 22 4 1.0 1.14707866935 -input1.bam FBtr0070533 F 23 2 1.0 -0.114707866935 -input1.bam FBtr0070533 F 24 0 1.0 -1.37649440322 -input1.bam FBtr0070533 F 25 1 1.0 -0.745601135079 -input1.bam FBtr0070533 R 15 0 1.0 -0.114707866935 -input1.bam FBtr0070533 R 16 0 1.0 -0.745601135079 -input1.bam FBtr0070533 R 17 0 1.0 -0.745601135079 -input1.bam FBtr0070533 R 18 0 1.0 2.40886520564 -input1.bam FBtr0070533 R 19 0 1.0 0.516185401209 -input1.bam FBtr0070533 R 20 0 1.0 -0.114707866935 -input1.bam FBtr0070533 R 21 0 1.0 -0.114707866935 -input1.bam FBtr0070533 R 22 0 1.0 1.14707866935 -input1.bam FBtr0070533 R 23 0 1.0 -0.114707866935 -input1.bam FBtr0070533 R 24 0 1.0 -1.37649440322 -input1.bam FBtr0070533 R 25 0 1.0 -0.745601135079 -input1.bam FBtr0070603 F 15 9 1.0 1.25973222843 -input1.bam FBtr0070603 F 16 6 1.0 0.214422506968 -input1.bam FBtr0070603 F 17 10 1.0 1.60816880226 -input1.bam FBtr0070603 F 18 7 1.0 0.56285908079 -input1.bam FBtr0070603 F 19 1 1.0 -1.52776036214 -input1.bam FBtr0070603 F 20 6 1.0 0.214422506968 -input1.bam FBtr0070603 F 21 3 1.0 -0.830887214499 -input1.bam FBtr0070603 F 22 3 1.0 -0.830887214499 -input1.bam FBtr0070603 F 23 10 1.0 1.60816880226 -input1.bam FBtr0070603 F 24 2 1.0 -1.17932378832 -input1.bam FBtr0070603 F 25 5 1.0 -0.134014066855 -input1.bam FBtr0070603 F 26 5 1.0 -0.134014066855 -input1.bam FBtr0070603 F 27 3 1.0 -0.830887214499 -input1.bam FBtr0070603 R 15 0 1.0 1.25973222843 -input1.bam FBtr0070603 R 16 0 1.0 0.214422506968 -input1.bam FBtr0070603 R 17 0 1.0 1.60816880226 -input1.bam FBtr0070603 R 18 0 1.0 0.56285908079 -input1.bam FBtr0070603 R 19 0 1.0 -1.52776036214 -input1.bam FBtr0070603 R 20 0 1.0 0.214422506968 -input1.bam FBtr0070603 R 21 0 1.0 -0.830887214499 -input1.bam FBtr0070603 R 22 0 1.0 -0.830887214499 -input1.bam FBtr0070603 R 23 0 1.0 1.60816880226 -input1.bam FBtr0070603 R 24 0 1.0 -1.17932378832 -input1.bam FBtr0070603 R 25 0 1.0 -0.134014066855 -input1.bam FBtr0070603 R 26 0 1.0 -0.134014066855 -input1.bam FBtr0070603 R 27 0 1.0 -0.830887214499 -input1.bam FBtr0070604 F 15 2 1.0 -0.340359959259 -input1.bam FBtr0070604 F 16 0 1.0 -0.618836289562 -input1.bam FBtr0070604 F 17 0 1.0 -0.618836289562 -input1.bam FBtr0070604 F 18 2 1.0 -0.340359959259 -input1.bam FBtr0070604 F 19 2 1.0 -0.340359959259 -input1.bam FBtr0070604 F 20 0 1.0 -0.618836289562 -input1.bam FBtr0070604 F 21 1 1.0 -0.479598124411 -input1.bam FBtr0070604 F 22 23 1.0 2.58364150892 -input1.bam FBtr0070604 F 23 10 1.0 0.773545361953 -input1.bam FBtr0070604 R 15 0 1.0 -0.340359959259 -input1.bam FBtr0070604 R 16 0 1.0 -0.618836289562 -input1.bam FBtr0070604 R 17 0 1.0 -0.618836289562 -input1.bam FBtr0070604 R 18 0 1.0 -0.340359959259 -input1.bam FBtr0070604 R 19 0 1.0 -0.340359959259 -input1.bam FBtr0070604 R 20 0 1.0 -0.618836289562 -input1.bam FBtr0070604 R 21 0 1.0 -0.479598124411 -input1.bam FBtr0070604 R 22 0 1.0 2.58364150892 -input1.bam FBtr0070604 R 23 0 1.0 0.773545361953 -input1.bam FBtr0070911 F 15 1 1.0 1.58113883008 -input1.bam FBtr0070911 F 16 0 1.0 -0.632455532034 -input1.bam FBtr0070911 F 17 0 1.0 -0.632455532034 -input1.bam FBtr0070911 F 18 0 1.0 -0.632455532034 -input1.bam FBtr0070911 F 19 0 1.0 -0.632455532034 -input1.bam FBtr0070911 F 20 0 1.0 -0.632455532034 -input1.bam FBtr0070911 F 21 1 1.0 1.58113883008 -input1.bam FBtr0070911 R 15 0 1.0 1.58113883008 -input1.bam FBtr0070911 R 16 0 1.0 -0.632455532034 -input1.bam FBtr0070911 R 17 0 1.0 -0.632455532034 -input1.bam FBtr0070911 R 18 0 1.0 -0.632455532034 -input1.bam FBtr0070911 R 19 0 1.0 -0.632455532034 -input1.bam FBtr0070911 R 20 0 1.0 -0.632455532034 -input1.bam FBtr0070911 R 21 0 1.0 1.58113883008 -input1.bam FBtr0078490 F 15 3 1.0 1.76410571268 -input1.bam FBtr0078490 F 16 3 1.0 1.76410571268 -input1.bam FBtr0078490 F 17 0 1.0 -0.742781352708 -input1.bam FBtr0078490 F 18 1 1.0 0.0928476690885 -input1.bam FBtr0078490 F 19 0 1.0 -0.742781352708 -input1.bam FBtr0078490 F 20 0 1.0 -0.742781352708 -input1.bam FBtr0078490 F 21 0 1.0 -0.742781352708 -input1.bam FBtr0078490 F 22 0 1.0 -0.742781352708 -input1.bam FBtr0078490 F 23 1 1.0 0.0928476690885 -input1.bam FBtr0078490 R 15 0 1.0 1.76410571268 -input1.bam FBtr0078490 R 16 0 1.0 1.76410571268 -input1.bam FBtr0078490 R 17 0 1.0 -0.742781352708 -input1.bam FBtr0078490 R 18 0 1.0 0.0928476690885 -input1.bam FBtr0078490 R 19 0 1.0 -0.742781352708 -input1.bam FBtr0078490 R 20 0 1.0 -0.742781352708 -input1.bam FBtr0078490 R 21 0 1.0 -0.742781352708 -input1.bam FBtr0078490 R 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