comparison test-data/paired_2.fa @ 3:4d9682bd3a6b draft

planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/small_rna_signatures commit 96ed5824190aff281cc3aa47dc60fc66aac41db3
author artbio
date Sat, 02 Sep 2017 06:35:15 -0400
parents
children a7fd04208764
comparison
equal deleted inserted replaced
2:320e06bf99b9 3:4d9682bd3a6b
1 >FBgn0000004_17.6|5844|R|21|n=1
2 TTTTCGTCAAGTGTGCTAAAT
3 >FBgn0000004_17.6|5855|F|23|n=1
4 TTGACGAAAATGATCGAGTGGAT
5 >FBgn0000005_297|1347|F|21|n=1
6 TTGCACAAAATGAGGGAATTT
7 >FBgn0000005_297|1334|R|23|n=1
8 TTTTGCGCAATGGTAATTAAGGA
9 >FBgn0000007_1731|4545|R|20|n=1
10 TTGAGAGCAAAGGCCGAATG
11 >FBgn0000007_1731|4555|F|24|n=1
12 TTGCTCTCAATGCGCTGAGTTTGG
13 >FBgn0000155_roo|2682|R|20|n=2
14 TTTTTACCAAACGGATGCCT
15 >FBgn0000155_roo|2692|F|24|n=1
16 TTGGTAAAAAATGTATAAGTGAGC
17 >FBgn0000155_roo|2692|F|27|n=1
18 TTGGTAAAAAATGTATAAGTGAGCAGC
19 >FBgn0000155_roo|3241|F|20|n=1
20 TTGGGCAAAAAACTGATTTC
21 >FBgn0000155_roo|3225|R|26|n=1
22 TTTTGCCCAAGGAGACCGTCTATTTT
23 >FBgn0000155_roo|3226|R|25|n=1
24 TTTTGCCCAAGGAGACCGTCTATTT
25 >FBgn0000155_roo|3227|R|24|n=2
26 TTTTGCCCAAGGAGACCGTCTATT
27 >FBgn0000155_roo|3228|R|23|n=1
28 TTTTGCCCAAGGAGACCGTCTAT
29 >FBgn0000155_roo|3229|R|22|n=2
30 TTTTGCCCAAGGAGACCGTCTA
31 >FBgn0000155_roo|3241|F|24|n=1
32 TTGGGCAAAAAACTGATTTCGGGT
33 >FBgn0000155_roo|3241|F|27|n=1
34 TTGGGCAAAAAACTGATTTCGGGTGGA
35 >FBgn0000155_roo|3241|F|28|n=1
36 TTGGGCAAAAAACTGATTTCGGGTGGAT
37 >FBgn0000155_roo|8644|R|21|n=1
38 TTCTGCCAAAGGGCCAGCAAG
39 >FBgn0000155_roo|8655|F|25|n=1
40 TTTGGCAGAATGTTCACACATGAAA
41 >FBgn0000349_copia|658|R|22|n=1
42 TTCTCAAGAATCTGACGCGCCG
43 >FBgn0000349_copia|670|F|25|n=1
44 TTCTTGAGAATTTGGACGCCGTTTA
45 >FBgn0000349_copia|4628|F|20|n=1
46 TTTGCTGCAAGACGACCAAT
47 >FBgn0000349_copia|4614|R|24|n=1
48 TTGCAGCAAACCCAATTTGTCTCG
49 >FBgn0000652_F-element|1564|F|20|n=2
50 TTTTCTCGAAAGCAGCAAGT
51 >FBgn0000652_F-element|1546|R|28|n=1
52 TTCGAGAAAATTACTTCAGGATTTGTCT
53 >FBgn0000652_F-element|1546|R|28|n=1
54 TTCGGGAAAATTACTTCAGGATTTGTCT
55 >FBgn0000652_F-element|1547|R|27|n=74
56 TTCGAGAAAATTACTTCAGGATTTGTC
57 >FBgn0000652_F-element|1547|R|27|n=1
58 TTCGGGAAAATTACTTCAGGATTTGTC
59 >FBgn0000652_F-element|1547|R|27|n=1
60 TTTGAGAAAATTACTTCAGGATTTGTC
61 >FBgn0000652_F-element|1548|R|26|n=3
62 TTCGAGAAAATTACTTCAGGATTTGT
63 >FBgn0000652_F-element|1549|R|25|n=22
64 TTCGAGAAAATTACTTCAGGATTTG
65 >FBgn0000652_F-element|1549|R|25|n=1
66 TTCGGGAAAATTACTTCAGGATTTG
67 >FBgn0000652_F-element|1550|R|24|n=2
68 TTCGAGAAAATTACTTCAGGATTT
69 >FBgn0000652_F-element|1551|R|23|n=7
70 TTCGAGAAAATTACTTCAGGATT
71 >FBgn0000652_F-element|1554|R|20|n=1
72 TTCGAGAAAATTACTTCAGG
73 >FBgn0000652_F-element|1564|F|23|n=2
74 TTTTCTCGAAAGCAGCAAGTTTC
75 >FBgn0000652_F-element|1564|F|24|n=2
76 TTTTCTCGAAAGCAGCAAGTTTCG
77 >FBgn0000652_F-element|1564|F|23|n=2
78 TTTTCTCGAAAGCAGCTAGTTTC
79 >FBgn0000652_F-element|1564|F|24|n=5
80 TTTTCTCGAAAGCAGCTAGTTTCG
81 >FBgn0000652_F-element|1564|F|25|n=1
82 TTTTCTCGAAAGCAGCTAGTTTCGC
83 >FBgn0000652_F-element|2248|F|20|n=1
84 TTTCTTCCAAGCACTAGGGC
85 >FBgn0000652_F-element|2231|R|27|n=1
86 TTGGAAGAAATCCAGGAATTGAGCTTC
87 >FBgn0000652_F-element|2233|R|25|n=5
88 TTGGAAGAAATCCAGGAATTGAGCT
89 >FBgn0000652_F-element|2471|R|21|n=2
90 TTTAACCAAACTGCGGGAAAT
91 >FBgn0000652_F-element|2482|F|23|n=2
92 TTTGGTTAAAGCTGAATGTCTGC
93 >FBgn0000652_F-element|2482|F|24|n=2
94 TTTGGTTAAAGCTGAATGTCTGCC
95 >FBgn0000652_F-element|2482|F|26|n=3
96 TTTGGTTAAAGCTGAATGTCTGCCGG
97 >FBgn0000652_F-element|2482|F|27|n=1
98 TTTGGTTAAAGCTGAATGTCTGCCGGA
99 >FBgn0000652_F-element|3524|F|21|n=2
100 TTTCGCGAAAGCCACGGAACC
101 >FBgn0000652_F-element|3507|R|27|n=1
102 TTTCGCGAAATCCAAATTGGTGGGCTG
103 >FBgn0000652_F-element|3509|R|25|n=6
104 TTTCGCGAAATCCAAATTGGTGGGC
105 >FBgn0000652_F-element|3510|R|24|n=1
106 TTTCGCGAAATCCAAATTGGTGGG
107 >FBgn0000652_F-element|3513|R|21|n=3
108 TTTCGCGAAATCCAAATTGGT
109 >FBgn0000652_F-element|3524|F|23|n=1
110 TTTCGCGAAAGCCACGGAACCAT
111 >FBgn0000652_F-element|3524|F|27|n=1
112 TTTCGCGAAAGCCACGGAACCATTGAA
113 >FBgn0000652_F-element|3524|F|24|n=1
114 TTTCGCGAAAGCCATGGAACCATT
115 >FBgn0000652_F-element|3524|F|26|n=1
116 TTTCGCGAAAGCCATGGAACCATTGA
117 >FBgn0002697_mdg1|4301|R|22|n=1
118 TTCTTTGGAAAGAATTTGGGGC
119 >FBgn0002697_mdg1|4313|F|25|n=1
120 TTCCAAAGAATGATGACCCTTGCAT
121 >FBgn0003007_opus|5558|F|21|n=1
122 TTCCTAGAAATTTATCGTTGC
123 >FBgn0003007_opus|5540|R|28|n=1
124 TTTCTAGGAACGTAGAATGGAATCTCTC
125 >FBgn0003007_opus|5540|R|28|n=1
126 TTTCTAGGAACGTAGAGTGGAATCTCTC
127 >FBgn0003007_opus|5542|R|26|n=1
128 TTTCTAGGAACGTAGAATGGAATCTC
129 >FBgn0003007_opus|5542|R|26|n=2
130 TTTCTAGGAACGTAGAGTGGAATCTC
131 >FBgn0003007_opus|5543|R|25|n=1
132 TTTCTAGGAACGTAGAGTGGAATCT
133 >FBgn0003007_opus|5544|R|24|n=7
134 TTTCTAGGAACGTAGAGTGGAATC
135 >FBgn0003122_pogo|1819|F|22|n=1
136 TTCTATGGAAGACAAGCTGTTT
137 >FBgn0003122_pogo|1804|R|25|n=1
138 TTCCATAGAATTCAAGTTTTGCAAA
139 >FBgn0003122_pogo|1806|R|23|n=1
140 TTCCATAGAATTCAAGTTTTGCA
141 >FBgn0003908_R1A1-element|4690|F|22|n=1
142 TTGGCGAAAACTAGATCTTCGA
143 >FBgn0003908_R1A1-element|4671|R|29|n=1
144 TTTTCGCCAAGGCGCTGCACTCCAAGTCC
145 >FBgn0003908_R1A1-element|4672|R|28|n=8
146 TTTTCGCCAAGGCGCTGCACTCCAAGTC
147 >FBgn0003908_R1A1-element|4673|R|27|n=1
148 TTTTCGCCAAGGCGCTGCACCCCAAGT
149 >FBgn0003908_R1A1-element|4673|R|27|n=4
150 TTTTCGCCAAGGCGCTGCACTCCAAGT
151 >FBgn0003908_R1A1-element|4674|R|26|n=1
152 TTTTCGCCAAGGCGCTGCACCCCAAG
153 >FBgn0003908_R1A1-element|4674|R|26|n=29
154 TTTTCGCCAAGGCGCTGCACTCCAAG
155 >FBgn0003908_R1A1-element|4674|R|26|n=2
156 TTTTCGCCAAGGCGCTGCACTTCAAG
157 >FBgn0003908_R1A1-element|4674|R|26|n=1
158 TTTTCGTCAAGGCGCTGCACTCCAAG
159 >FBgn0003908_R1A1-element|4675|R|25|n=1
160 TTTTCGCCAAGGCGCTGCACCCCAA
161 >FBgn0003908_R1A1-element|4675|R|25|n=10
162 TTTTCGCCAAGGCGCTGCACTCCAA
163 >FBgn0003908_R1A1-element|4675|R|25|n=1
164 TTTTCGCCAAGGCGCTGCACTTCAA
165 >FBgn0003908_R1A1-element|4676|R|24|n=21
166 TTTTCGCCAAGGCGCTGCACTCCA
167 >FBgn0003908_R1A1-element|4676|R|24|n=2
168 TTTTCGCCAAGGCGCTGCACTTCA
169 >FBgn0003908_R1A1-element|4677|R|23|n=12
170 TTTTCGCCAAGGCGCTGCACTCC
171 >FBgn0003908_R1A1-element|4678|R|22|n=18
172 TTTTCGCCAAGGCGCTGCACTC
173 >FBgn0003908_R1A1-element|4690|F|23|n=8
174 TTGGCGAAAACTGGATCTTCGAG
175 >FBgn0003908_R1A1-element|4690|F|24|n=9
176 TTGGCGAAAACTGGATCTTCGAGA
177 >FBgn0003908_R1A1-element|4690|F|25|n=11
178 TTGGCGAAAACTGGATCTTCGAGAG
179 >FBgn0003908_R1A1-element|4690|F|26|n=6
180 TTGGCGAAAACTGGATCTTCGAGAGA
181 >FBgn0003908_R1A1-element|4690|F|27|n=20
182 TTGGCGAAAACTGGATCTTCGAGAGAA
183 >FBgn0003908_R1A1-element|4690|F|28|n=4
184 TTGGCGAAAACTGGATCTTCGAGAGAAT
185 >FBgn0003908_R1A1-element|4690|F|24|n=7
186 TTGGCGAAAACTGGATCTTCGAGG
187 >FBgn0003908_R1A1-element|4690|F|25|n=12
188 TTGGCGAAAACTGGATCTTCGAGGG
189 >FBgn0003908_R1A1-element|4690|F|26|n=2
190 TTGGCGAAAACTGGATCTTCGAGGGA
191 >FBgn0003908_R1A1-element|4690|F|27|n=9
192 TTGGCGAAAACTGGATCTTCGAGGGAA
193 >FBgn0003908_R1A1-element|4690|F|28|n=1
194 TTGGCGAAAACTGGATCTTCGAGGGAAT
195 >FBgn0005673_1360|773|R|22|n=1
196 TTTTCGCAATCATTCCATCCTG
197 >FBgn0005673_1360|785|F|26|n=6
198 TTTGCGAAAAATTGTTTGCTCAGAGC
199 >FBgn0005673_1360|3197|R|22|n=1
200 TTTGCTAGAAGACGATTTTCGG
201 >FBgn0005673_1360|3209|F|23|n=1
202 TTCTAGCACAACACGCACACATA
203 >FBgn0005673_1360|3209|F|26|n=1
204 TTCTAGCACAACACGCACACATATAC
205 >FBgn0005673_1360|3209|F|27|n=1
206 TTCTAGCACAACACGCACACATATACG
207 >FBgn0010302_Burdock|3390|R|21|n=1
208 TTTCATCGAAAGAAATTGGTA
209 >FBgn0010302_Burdock|3401|F|25|n=2
210 TTCGATGAAAGACAATGTTCTGCTT
211 >FBgn0014947_flea|818|F|22|n=1
212 TTCTAGAGAACGAAAGCGAGGA
213 >FBgn0014947_flea|801|R|27|n=4
214 TTCTCTAGAATTGCTTGTATTTGGTCG
215 >FBgn0014947_flea|802|R|26|n=11
216 TTCTCTAGAATTGCTTGTATTTGGTC
217 >FBgn0014947_flea|803|R|25|n=12
218 TTCTCTAGAATTGCTTGTATTTGGT
219 >FBgn0014947_flea|804|R|24|n=2
220 TTCTCTAGAATTGCTTGTATTTGG
221 >FBgn0014947_flea|805|R|23|n=1
222 TTCTCTAGAATTGCTTGTATTTG
223 >FBgn0014947_flea|1182|F|22|n=1
224 TTTCTTAGAATCTGAATGTGTC
225 >FBgn0014947_flea|1164|R|28|n=2
226 TTCTAAGAAAAGTTCTGCTGATCCAATC
227 >FBgn0014947_flea|1166|R|26|n=2
228 TTCTAAGAAAAGTTCTGCTGATCCAA
229 >FBgn0014947_flea|1167|R|25|n=1
230 TTCTAAGAAAAGTTCTGCTGATCCA
231 >FBgn0014947_flea|1168|R|24|n=1
232 TTCTAAGAAAAGTTCTGCTGATCC
233 >FBgn0014947_flea|1169|R|23|n=1
234 TTCTAAGAAAAGTTCTGCTGATC
235 >FBgn0014947_flea|2754|R|21|n=1
236 TTTAGACCAAATTCTGCAGCT
237 >FBgn0014947_flea|2765|F|24|n=4
238 TTGGTCTAAAAATAAAATGGAAGA
239 >FBgn0014947_flea|2765|F|25|n=1
240 TTGGTCTAAAAATAAAATGGAAGAA
241 >FBgn0014947_flea|2765|F|26|n=1
242 TTGGTCTAAAAATAAAATGGAAGAAG
243 >FBgn0014947_flea|2765|F|28|n=1
244 TTGGTCTAAAAATAAAATGGAAGAAGTG
245 >FBgn0015945_GATE|3158|F|20|n=3
246 TTCGTTCCAAATGAGCAAGC
247 >FBgn0015945_GATE|3140|R|28|n=9
248 TTGGAACGAAATTGGCCTGATTAGCGGA
249 >FBgn0015945_GATE|3141|R|27|n=4
250 TTGGAACGAAATTGGCCTGATTAGCGG
251 >FBgn0015945_GATE|3142|R|26|n=17
252 TTGGAACGAAATTGGCCTGATTAGCG
253 >FBgn0015945_GATE|3143|R|25|n=86
254 TTGGAACGAAATTGGCCTGATTAGC
255 >FBgn0015945_GATE|3144|R|24|n=17
256 TTGGAACGAAATTGGCCTGATTAG
257 >FBgn0015945_GATE|6234|R|22|n=1
258 TTGAAGGAAATCGCGGGAAAGC
259 >FBgn0015945_GATE|6246|F|25|n=1
260 TTTCCTTCAAGCCGTAAAAGAGTCG
261 >FBgn0015945_GATE|6246|F|26|n=1
262 TTTCCTTCAAGCCGTAAAAGAGTCGG
263 >FBgn0042682_Rt1b|1075|R|21|n=1
264 TTCTTGGCGACAGATGCGTAG
265 >FBgn0042682_Rt1b|1086|F|23|n=1
266 TTGCCAAGAATGCTAGCACGGGT
267 >FBgn0042682_Rt1b|2920|F|22|n=1
268 TTGTTACCAAAAAGCTAAGGAG
269 >FBgn0042682_Rt1b|2902|R|28|n=1
270 TTGGTAACAAGCTTGTAGGCGAGGCCCC
271 >FBgn0042682_Rt1b|2903|R|27|n=1
272 TTGGTAACAAGCTTGTAGGCGAGGCCC
273 >FBgn0042682_Rt1b|2904|R|26|n=2
274 TTGGTAACAAGCTTGTAGGCGAGGCC
275 >FBgn0042682_Rt1b|2904|R|26|n=1
276 TTGGTAACAAGCTTGTAGGCGAGTCC
277 >FBgn0042682_Rt1b|2905|R|25|n=2
278 TTGGTAACAAGCTTGTAGGCGAGGC
279 >FBgn0042682_Rt1b|2905|R|25|n=1
280 TTGGTAACAAGCTTGTAGGCGAGGT
281 >FBgn0042682_Rt1b|2906|R|24|n=25
282 TTGGTAACAAGCTTGTAGGCGAGG
283 >FBgn0042682_Rt1b|2907|R|23|n=1
284 TTGGTAACAAGCTTGGAGGCGAG
285 >FBgn0042682_Rt1b|2907|R|23|n=15
286 TTGGTAACAAGCTTGTAGGCGAG
287 >FBgn0042682_Rt1b|2908|R|22|n=1
288 TTGGTAACAAGCTTGTAGGCGA
289 >FBgn0042682_Rt1b|2920|F|23|n=1
290 TTGTTACCAAAAAGCTAAGGAGG
291 >FBgn0042682_Rt1b|2920|F|25|n=1
292 TTGTTACCAAAAAGCTAAGGAGGAG
293 >FBgn0042682_Rt1b|2920|F|26|n=1
294 TTGTTACCAAAAAGCTAAGGAGGAGA
295 >FBgn0042682_Rt1b|2920|F|27|n=1
296 TTGTTACCAAAAAGCTAAGGAGGAGAG
297 >FBgn0042682_Rt1b|2920|F|23|n=1
298 TTGTTACCAACAAGCTAAGGAGG
299 >FBgn0042682_Rt1b|2920|F|24|n=2
300 TTGTTACCAACAAGCTAAGGAGGA
301 >FBgn0042682_Rt1b|4364|R|22|n=1
302 TTGCCTGGAAGCGCCACTCCGC
303 >FBgn0042682_Rt1b|4376|F|24|n=1
304 TTCCAGGCAAGAGGCACACGAGTG
305 >FBgn0042682_Rt1b|4376|F|26|n=1
306 TTCCAGGCAAGAGGCACACGAGTGGC
307 >FBgn0062343_Dm88|4210|R|21|n=1
308 TTGGTTAGAACATCTGCCATC
309 >FBgn0062343_Dm88|4221|F|24|n=1
310 TTCTAACCAAGAATTTGAATAGAT
311 >FBgn0063427_invader4|707|F|22|n=2
312 TTCGTAGGAATGGAGACGTCGG
313 >FBgn0063427_invader4|691|R|26|n=15
314 TTCCTACGAATCGCTGTATGAACAGT
315 >FBgn0063428_invader3|440|F|22|n=2
316 TTCCCCAGAAACGCGTGGCGAT
317 >FBgn0063428_invader3|425|R|25|n=1
318 TTCTGGGGAAATGGCCTGCAGACGC
319 >FBgn0063428_invader3|427|R|23|n=1
320 TTCTGGGGAAATGGCCTGCAGAC
321 >FBgn0063430_invader1|2082|R|20|n=1
322 TTTTATCGAACCAATAGAAC
323 >FBgn0063430_invader1|2092|F|24|n=1
324 TTCGATAAAATGTCTAAGTATGTT
325 >FBgn0063430_invader1|2092|F|26|n=1
326 TTCGATAAAATGTCTAAGTATGTTCG
327 >FBgn0063433_gypsy4|3058|F|22|n=1
328 TTCTTCAAAAAGAGCGTGGAAT
329 >FBgn0063433_gypsy4|3040|R|28|n=1
330 TTTTGAAGAACTTGGATTTTTCTTGAGA
331 >FBgn0063433_gypsy4|3044|R|24|n=1
332 TTTTGAAGAACTTGGATTTTTCTT
333 >FBgn0063440_baggins|5170|F|21|n=1
334 TTGCACAAAATTGGCATTGCA
335 >FBgn0063440_baggins|5154|R|26|n=1
336 TTTTGTGCAAATGGCTGTGAAGTCGG
337 >FBgn0063919_Max-element|3887|R|21|n=2
338 TTGCTGAGAAGCGTGTTGAGC
339 >FBgn0063919_Max-element|3898|F|23|n=1
340 TTCTCAGCAAGTTCTGGGAGGTG
341 >FBgn0063919_Max-element|3898|F|24|n=2
342 TTCTCAGCAAGTTCTGGGAGGTGG
343 >FBgn0063919_Max-element|3898|F|25|n=1
344 TTCTCAGCAAGTTCTGGGAGGTGGA
345 >FBgn0063919_Max-element|3898|F|24|n=1
346 TTCTCAGCAAGTTCTGGGAGGTGT
347 >FBgn0067385_invader6|3024|F|21|n=1
348 TTGACTAGAATGACTTAGACT
349 >FBgn0067385_invader6|3007|R|27|n=4
350 TTCTAGTCAAAGTCGAAGGACTGCATA
351 >FBgn0067385_invader6|3008|R|26|n=3
352 TTCTAGTCAAAGTCGAAGGACTGCAT
353 >FBgn0067385_invader6|3009|R|25|n=5
354 TTCTAGTCAAAGTCGAAGGACTGCA
355 >FBgn0067385_invader6|3010|R|24|n=4
356 TTCTAGTCAAAGTCGAAGGACTGC
357 >FBgn0067385_invader6|3011|R|23|n=1
358 TTCTAGTCAAAGTCGAAGGACTG
359 >FBgn0067385_invader6|3014|R|20|n=1
360 TTCTAGTCAAAGTCGAAGGA
361 >FBgn0067385_invader6|3024|F|26|n=1
362 TTGACTAGAATGACTTAGACTTAGAA
363 >FBgn0067624_BS3|1016|R|20|n=1
364 TTGATGCCAATGTTCCAACG
365 >FBgn0067624_BS3|1026|F|26|n=1
366 TTGGCATCAATGGTGACAAATCAGCG
367 >FBgn0067624_BS3|1026|F|24|n=1
368 TTGGCATCAATGGTGACAAATCTG
369 >FBgn0067624_BS3|1026|F|25|n=1
370 TTGGCATCAATGGTGACAAATCTGC