comparison signature.py @ 11:8d3ca9652a5b draft

"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/small_rna_signatures commit 8691f2575cacd71c971338658198a1324e5f9370"

10:68ee7c84d498

    def compute_query_positions(self):
        ''' this method does not filter on read size, just forward reads
        that overlap reverse reads in the overlap range'''
        all_query_positions = defaultdict(list)
        for genomicKey in self.map_dict.keys():
            chrom, coord, pol = genomicKey
            for i in self.scope:
                if pol == 'F' and len(self.map_dict[chrom,
                                                    coord+i-1,
                                                    'R']) > 0:

11:8d3ca9652a5b

    def compute_query_positions(self):
        ''' this method does not filter on read size, just forward reads
        that overlap reverse reads in the overlap range'''
        all_query_positions = defaultdict(list)
        for genomicKey in list(self.map_dict):
            chrom, coord, pol = genomicKey
            for i in self.scope:
                if pol == 'F' and len(self.map_dict[chrom,
                                                    coord+i-1,
                                                    'R']) > 0: