# HG changeset patch
# User artbio
# Date 1578398396 18000
# Node ID 68ee7c84d49831e5ffefe46264eaa6650223d839
# Parent  59ee49bfb7bbe8d5c05566166520b6bfa0e11553
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/small_rna_signatures commit 4e84386b619a7941f23d175d7fc86aba7990ac36"

diff -r 59ee49bfb7bb -r 68ee7c84d498 signature.xml
--- a/signature.xml	Fri Apr 26 09:01:17 2019 -0400
+++ b/signature.xml	Tue Jan 07 06:59:56 2020 -0500
@@ -1,4 +1,4 @@
-<tool id="signature" name="Small RNA Signatures" version="3.2.0">
+<tool id="signature" name="Small RNA Signatures" version="3.2.1">
     <description />
     <requirements>
         <requirement type="package" version="1.11.2=py27_0">numpy</requirement>
@@ -89,7 +89,7 @@
 
 Compute small RNA (piRNA, siRNA, ...) signatures.
 
-This tool computes (i) the number of pairs **aligned** reads by overlap classes (in nt) and associated the z-scores,
+This tool computes (i) the number of pairs **aligned** reads by overlap classes (in nt) and associated z-scores,
 and (ii) the ping-pong signal (`Brennecke et al, 2009`_) and associated z-scores.
 
 **Note** that the number of pairs of aligned reads is disctint from the number of pairs of reads
@@ -97,7 +97,7 @@
 when the analysis is restricted to uniquely mapping reads.
 
 Options set the min and max size of both the query small rna class and the target small rna class, 
-the range over which to compute the signatures, and whether the signatures should be reported at 
+the range of overlaps (in nt) over which to compute the signatures, and whether the signatures should be reported at 
 genome-wide level or by item (chromosomes, genes, etc.). For details on computational algorithmes 
 for piRNA and siRNA signatures, see `Antoniewski (2014)`_.
 
@@ -110,10 +110,10 @@
 
 **Outputs**
 
-**Global**: The number of pairs founds, the ping-pong signal and the associated z-scores 
+**Global**: The number of pairs found, the ping-pong signal and the associated z-scores 
 are computed at genome-wide level and returned in a pdf file.
 
-**Lattice**: The number of pairs founds, the ping-pong signals and the associated z-scores 
+**Lattice**: The number of pairs found, the ping-pong signals and the associated z-scores 
 are computed for each items described in the BAM alignment input and returned in a pdf file as a lattice graph.