Mercurial > repos > artbio > snvtocnv
diff segmentation_sequenza.R @ 1:d2833cfb3f08 draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/snvtocnv commit aa1b68e64cbbdcdd9167134ec2ea61a151333688
| author | artbio |
|---|---|
| date | Thu, 19 May 2022 20:35:24 +0000 |
| parents | b77d7a0a45e8 |
| children |
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--- a/segmentation_sequenza.R Sun Mar 07 23:19:59 2021 +0000 +++ b/segmentation_sequenza.R Thu May 19 20:35:24 2022 +0000 @@ -40,9 +40,9 @@ ## Processing seqz files : normalisation and segmentation for chromosomes 1 to 22 message(sprintf("\nExtraction step for %s", data_file)) -chrom_list <- c("chr1", "chr2", "chr3", "chr4", "chr5", "chr6", "chr7", "chr8", "chr9", - "chr10", "chr11", "chr12", "chr13", "chr14", "chr15", "chr16", "chr17", - "chr18", "chr19", "chr20", "chr21", "chr22") + chrom_list <- c("chr1", "chr2", "chr3", "chr4", "chr5", "chr6", "chr7", "chr8", "chr9", + "chr10", "chr11", "chr12", "chr13", "chr14", "chr15", "chr16", "chr17", + "chr18", "chr19", "chr20", "chr21", "chr22", "chrX") Sys.setenv(TZDIR = "/usr/share/zoneinfo/") Sys.setenv(TZ = "US/Eastern")