Mercurial > repos > artbio > sr_bowtie

comparison sRbowtie.xml @ 6:e4a05086ea02 draft

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"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/sr_bowtie commit 1b3431dcb7e220ab736de4598d0f769cb6c60015"
author artbio
date Fri, 29 Oct 2021 19:04:05 +0000
parents 0281bb245635
children 3d5bd42097d7
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5:0281bb245635 6:e4a05086ea02
1 <tool id="bowtieForSmallRNA" name="sR_bowtie" version="2.1.1"> 1 <tool id="bowtieForSmallRNA" name="sR_bowtie" version="2.2.0">
2 <description>for small RNA short reads</description> 2 <description>for small RNA short reads</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.1.2=py27_0">bowtie</requirement> 4 <requirement type="package" version="1.3.1">bowtie</requirement>
5 <requirement type="package" version="1.2">samtools</requirement> 5 <requirement type="package" version="1.14">samtools</requirement>
6 </requirements> 6 </requirements>
7 <command detect_errors="exit_code"><![CDATA[ 7 <command detect_errors="exit_code"><![CDATA[
8 #if $refGenomeSource.genomeSource == "history": 8 #if $refGenomeSource.genomeSource == "history":
9 bowtie-build -f $refGenomeSource.ownFile genome 1>/dev/null && 9 bowtie-build -f $refGenomeSource.ownFile genome 1>/dev/null &&
10 ln -s -f '$refGenomeSource.ownFile' genome.fa && 10 ln -s -f '$refGenomeSource.ownFile' genome.fa &&