# HG changeset patch
# User artbio
# Date 1537536808 14400
# Node ID 3c9d01ebc56dacd7f6e905ae8e23b52918eca673
# Parent  61ab0d4bd187321b39744cba048de42547acd4fd
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/sr_bowtie commit a5600be04bcee6b6e5418ab689f05bb5b815fe31

diff -r 61ab0d4bd187 -r 3c9d01ebc56d sRbowtie.xml
--- a/sRbowtie.xml	Thu Feb 01 13:07:22 2018 -0500
+++ b/sRbowtie.xml	Fri Sep 21 09:33:28 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="bowtieForSmallRNA" name="sR_bowtie" version="2.0.3">
+<tool id="bowtieForSmallRNA" name="sR_bowtie" version="2.1.0">
     <description>for small RNA short reads</description>
     <requirements>
         <requirement type="package" version="1.1.2=py27_0">bowtie</requirement>
@@ -124,11 +124,21 @@
                 </conditional>
             </actions>
         </data>
-        <data format="fasta" label="Matched reads" name="aligned">
+        <data format="fastqsanger" label="Matched reads" name="aligned">
             <filter>additional_fasta == "al" or additional_fasta == "al_and_unal"</filter>
+            <actions>
+                <action type="format">
+                    <option type="from_param" name="input" param_attribute="ext" />
+                </action>
+            </actions>
         </data>
-        <data format="fasta" label="Unmatched reads" name="unaligned">
+        <data format="fastqsanger" label="Unmatched reads" name="unaligned">
             <filter>additional_fasta == "unal" or additional_fasta == "al_and_unal"</filter>
+            <actions>
+                <action type="format">
+                    <option type="from_param" name="input" param_attribute="ext" />
+                </action>
+            </actions>
         </data>
     </outputs>
     <tests>