Mercurial > repos > artbio > sr_bowtie

changeset 7:3d5bd42097d7 draft default tip

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/sr_bowtie commit cf30b4fab90cf7910bb2900a05b85ca3344aae59
author artbio
date Tue, 15 Nov 2022 00:44:57 +0000
parents e4a05086ea02
children
files sRbowtie.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/sRbowtie.xml	Fri Oct 29 19:04:05 2021 +0000
+++ b/sRbowtie.xml	Tue Nov 15 00:44:57 2022 +0000
@@ -1,4 +1,4 @@
-<tool id="bowtieForSmallRNA" name="sR_bowtie" version="2.2.0">
+<tool id="bowtieForSmallRNA" name="sR_bowtie" version="2.3.0">
     <description>for small RNA short reads</description>
     <requirements>
         <requirement type="package" version="1.3.1">bowtie</requirement>
@@ -6,7 +6,7 @@
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         #if $refGenomeSource.genomeSource == "history":
-            bowtie-build -f $refGenomeSource.ownFile genome 1>/dev/null &&
+            bowtie-build --threads \${GALAXY_SLOTS:-4} -f $refGenomeSource.ownFile genome 1>/dev/null &&
             ln -s -f '$refGenomeSource.ownFile' genome.fa &&
             #set index_path = 'genome'
         #else: