Mercurial > repos > artbio > sr_bowtie
changeset 7:3d5bd42097d7 draft default tip
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/sr_bowtie commit cf30b4fab90cf7910bb2900a05b85ca3344aae59
author | artbio |
---|---|
date | Tue, 15 Nov 2022 00:44:57 +0000 |
parents | e4a05086ea02 |
children | |
files | sRbowtie.xml |
diffstat | 1 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/sRbowtie.xml Fri Oct 29 19:04:05 2021 +0000 +++ b/sRbowtie.xml Tue Nov 15 00:44:57 2022 +0000 @@ -1,4 +1,4 @@ -<tool id="bowtieForSmallRNA" name="sR_bowtie" version="2.2.0"> +<tool id="bowtieForSmallRNA" name="sR_bowtie" version="2.3.0"> <description>for small RNA short reads</description> <requirements> <requirement type="package" version="1.3.1">bowtie</requirement> @@ -6,7 +6,7 @@ </requirements> <command detect_errors="exit_code"><![CDATA[ #if $refGenomeSource.genomeSource == "history": - bowtie-build -f $refGenomeSource.ownFile genome 1>/dev/null && + bowtie-build --threads \${GALAXY_SLOTS:-4} -f $refGenomeSource.ownFile genome 1>/dev/null && ln -s -f '$refGenomeSource.ownFile' genome.fa && #set index_path = 'genome' #else: