Mercurial > repos > artbio > tarfast5
comparison tarfast5.xml @ 1:436f11e1ed6d draft
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/tarfast5 commit 8bd895c48953189b94dbe095db8767b82187a491"
| author | artbio |
|---|---|
| date | Thu, 06 May 2021 23:12:50 +0000 |
| parents | 0e548765d204 |
| children | e660e8605dd8 |
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| 0:0e548765d204 | 1:436f11e1ed6d |
|---|---|
| 1 <tool id="tarfast5" name="tarfast5" version="0.3"> | 1 <tool id="tarfast5" name="tarfast5" version="0.4"> |
| 2 <description></description> | 2 <description></description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="2.6">pigz</requirement> | 4 <requirement type="package" version="2.6">pigz</requirement> |
| 5 <requirement type="package" version="1.34">tar</requirement> | 5 <requirement type="package" version="1.34">tar</requirement> |
| 6 </requirements> | 6 </requirements> |
| 9 </stdio> | 9 </stdio> |
| 10 <command detect_errors="exit_code"><![CDATA[ | 10 <command detect_errors="exit_code"><![CDATA[ |
| 11 #for $file in $inputs: | 11 #for $file in $inputs: |
| 12 ln -s $file ${file.element_identifier}.h5 && | 12 ln -s $file ${file.element_identifier}.h5 && |
| 13 #end for | 13 #end for |
| 14 tar -I pigz -cvhf $compressed_output *.h5 | 14 export PIGZ="-p \${GALAXY_SLOTS:-4}" && |
| 15 tar -cvh --use-compress-program=pigz -f $compressed_output *.h5 | |
| 15 ]]></command> | 16 ]]></command> |
| 16 <inputs> | 17 <inputs> |
| 17 <param name="inputs" type="data" format="h5" label="fast5 sequence files" multiple="true" /> | 18 <param name="inputs" type="data" format="h5" label="fast5 sequence files" multiple="true" /> |
| 18 </inputs> | 19 </inputs> |
| 19 | 20 |