Mercurial > repos > artbio > tarfast5
changeset 4:56b8caf469f3 draft
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/tarfast5 commit 249d82b663920626adc7d5300ffef43c065c1205"
| author | artbio |
|---|---|
| date | Sat, 22 May 2021 12:35:41 +0000 |
| parents | 75ae798e310b |
| children | 03034755a509 |
| files | tarfast5.xml |
| diffstat | 1 files changed, 5 insertions(+), 5 deletions(-) [+] |
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--- a/tarfast5.xml Thu May 20 16:04:11 2021 +0000 +++ b/tarfast5.xml Sat May 22 12:35:41 2021 +0000 @@ -1,4 +1,4 @@ -<tool id="tarfast5" name="tarfast5" version="0.5.3"> +<tool id="tarfast5" name="tarfast5" version="0.6.0"> <description></description> <requirements> <requirement type="package" version="2.6">pigz</requirement> @@ -9,17 +9,17 @@ </stdio> <command detect_errors="exit_code"><![CDATA[ #for $file in $inputs: - ln -s $file ${file.element_identifier}.h5 && + ln -s $file ${file.element_identifier}.fast5 && #end for #if $output_format == "gzip": export PIGZ="-p \${GALAXY_SLOTS:-4}" && - tar -cvh --use-compress-program=pigz -f $output *.h5 + tar -cvh --use-compress-program=pigz -f $output *.fast5 #else: - tar -cvh -f $output *.h5 + tar -cvh -f $output *.fast5 #end if ]]></command> <inputs> - <param name="inputs" type="data" format="h5" label="fast5 sequence files" multiple="true" /> + <param name="inputs" type="data" format="h5,fast5.tar" label="fast5 sequence files" multiple="true" /> <param name="output_format" type="select" label="compression of the tar archive" display="radio"> <option value="tar">tar (no compression)</option> <option value="gzip" selected="true">tar.gz</option>