Mercurial > repos > artbio > yac_clipper

annotate README.txt @ 4:f7947c5a18b8 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit 48768de9d682fb80c4981cd52ef724fdf8f6961e
author artbio
date Mon, 08 Apr 2019 07:26:41 -0400
parents ad6b978daa2e
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
1 This tool clips adapter sequences from a fastq file and outputs either a
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
2 fasta or fastq file of clipped reads with renumbered fasta/fastq headers.
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
3
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
4 Clipped sequences with Ns can be discarded.
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
5
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
6 Min size and max size filter clipped reads on their size.
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
7
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
8 Note that unclipped reads that satisfy the min and max size conditions are kept.
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
9
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
10 Homepage: drosophile.org
ad6b978daa2e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit e9cf2978954c546bb90eb11931f9cfd6562156f3
artbio
parents:
diff changeset
11 Repositoy development: https://bitbucket.org/drosofff/gedtools/