# HG changeset patch
# User artbio
# Date 1669673856 0
# Node ID acbf910cd2ae0df8b45ac6678a9c6d676a286234
# Parent  6bfb7e3332806037c84d4baed733fc594045ad57
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit a3e2a5c2c8d914a574ef35b0f1864ddbde70611b

diff -r 6bfb7e333280 -r acbf910cd2ae README.txt
--- a/README.txt	Wed Mar 17 22:09:32 2021 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,11 +0,0 @@
-This tool clips adapter sequences from a fastq file and outputs either a    
-fasta or fastq file of clipped reads with renumbered fasta/fastq headers.
-
-Clipped sequences with Ns can be discarded.
-
-Min size and max size filter clipped reads on their size.
-
-Note that unclipped reads that satisfy the min and max size conditions are kept.
-
-Homepage: drosophile.org
-Repositoy development: https://bitbucket.org/drosofff/gedtools/
diff -r 6bfb7e333280 -r acbf910cd2ae yac.py
--- a/yac.py	Wed Mar 17 22:09:32 2021 +0000
+++ b/yac.py	Mon Nov 28 22:17:36 2022 +0000
@@ -1,7 +1,5 @@
-#!/usr/bin/python
+#!/usr/bin/python3
 # yac = yet another clipper
-# v 1.2.1 - 23-08-2014 - Support FastQ output
-# v 1.1.0 - 23-08-2014 - argparse implementation
 # Christophe Antoniewski <drosofff@gmail.com>
 
 import argparse
diff -r 6bfb7e333280 -r acbf910cd2ae yac.xml
--- a/yac.xml	Wed Mar 17 22:09:32 2021 +0000
+++ b/yac.xml	Mon Nov 28 22:17:36 2022 +0000
@@ -1,4 +1,4 @@
-<tool id="yac" name="Clip adapter" version="2.4.0">
+<tool id="yac" name="Clip adapter" version="2.5.0">
     <description />
     <requirements>
         <requirement type="package" version="3.7.6">python</requirement>
@@ -149,6 +149,10 @@
 
 -------
 
+yac_clipper clips 7nt long motives in 5' of adapter sequences.
+
+It also accepts 1 mismatch in the searched 7nt motif
+
 **Inputs**
 
 1. A fastq or fasta file of reads to be clipped