Mercurial > repos > artbio > yac_clipper
changeset 2:da08e89abd18 draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit 4767dcb09e8bb26a38ea458b2cf4f9d98a4afb95
| author | artbio |
|---|---|
| date | Sat, 13 Oct 2018 17:09:16 -0400 |
| parents | 7c913274e22a |
| children | 94d67b195acd |
| files | yac.py yac.xml |
| diffstat | 2 files changed, 13 insertions(+), 12 deletions(-) [+] |
line wrap: on
line diff
--- a/yac.py Wed Jul 26 17:12:08 2017 -0400 +++ b/yac.py Sat Oct 13 17:09:16 2018 -0400 @@ -110,7 +110,6 @@ if __name__ == "__main__": args = Parser() - id = 0 for inputfile in args.input: main(inputfile, args.output, args.output_format, args.adapter_to_clip, args.min, args.max, args.Nmode)
--- a/yac.xml Wed Jul 26 17:12:08 2017 -0400 +++ b/yac.xml Sat Oct 13 17:09:16 2018 -0400 @@ -1,13 +1,15 @@ -<tool id="yac" name="Clip adapter" version="2.0.1"> +<tool id="yac" name="Clip adapter" version="2.1.1"> <description /> - <command interpreter="python">yac.py --input $input - --output $output - --output_format "$out_format" - --adapter_to_clip $clip_source.clip_sequence - --min $min - --max $max - --Nmode $Nmode - </command> + <command detect_errors="exit_code"><![CDATA[ + python $__tool_directory__/yac.py + --input $input + --output $output + --output_format "$out_format" + --adapter_to_clip $clip_source.clip_sequence + --min $min + --max $max + --Nmode $Nmode + ]]></command> <inputs> <param format="fastq" label="Source file" name="input" type="data" /> <param label="min size" name="min" size="4" type="integer" value="15" /> @@ -91,6 +93,6 @@ A fastq or fasta file containing clipped sequences satisfying the selected criteria. - </help> - <citations /> + </help> + <citations /> </tool>