diff bwa-0.6.2/main.h @ 2:a294fbfcb1db draft default tip

Uploaded BWA

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/bwa-0.6.2/main.h	Fri Jul 18 07:55:59 2014 -0400
@@ -0,0 +1,30 @@
+#ifndef BWA_MAIN_H
+#define BWA_MAIN_H
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+	int bwa_fa2pac(int argc, char *argv[]);
+	int bwa_pac2cspac(int argc, char *argv[]);
+	int bwa_pac2bwt(int argc, char *argv[]);
+	int bwa_bwtupdate(int argc, char *argv[]);
+	int bwa_bwt2sa(int argc, char *argv[]);
+	int bwa_index(int argc, char *argv[]);
+	int bwa_aln(int argc, char *argv[]);
+	int bwt_bwtgen_main(int argc, char *argv[]);
+
+	int bwa_sai2sam_se(int argc, char *argv[]);
+	int bwa_sai2sam_pe(int argc, char *argv[]);
+
+	int bwa_stdsw(int argc, char *argv[]);
+
+	int bwa_bwtsw2(int argc, char *argv[]);
+
+	int main_fastmap(int argc, char *argv[]);
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif