Mercurial > repos > ashvark > qiime_1_8_0
view bwa-0.6.2/Makefile @ 2:a294fbfcb1db draft default tip
Uploaded BWA
author | ashvark |
---|---|
date | Fri, 18 Jul 2014 07:55:59 -0400 |
parents | dd1186b11b3b |
children |
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CC= gcc CXX= g++ CFLAGS= -g -Wall -O2 CXXFLAGS= $(CFLAGS) AR= ar DFLAGS= -DHAVE_PTHREAD #-D_NO_SSE2 #-D_FILE_OFFSET_BITS=64 LOBJS= bwa.o bamlite.o utils.o bwt.o bwtio.o bwtaln.o bwtgap.o bntseq.o stdaln.o \ bwaseqio.o bwase.o kstring.o AOBJS= QSufSort.o bwt_gen.o \ is.o bwtmisc.o bwtindex.o ksw.o simple_dp.o \ bwape.o cs2nt.o \ bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o \ bwtsw2_chain.o fastmap.o bwtsw2_pair.o PROG= bwa INCLUDES= LIBS= -lm -lz -lpthread SUBDIRS= . .SUFFIXES:.c .o .cc .c.o: $(CC) -c $(CFLAGS) $(DFLAGS) $(INCLUDES) $< -o $@ .cc.o: $(CXX) -c $(CXXFLAGS) $(DFLAGS) $(INCLUDES) $< -o $@ all:$(PROG) bwa:libbwa.a $(AOBJS) main.o $(CC) $(CFLAGS) $(DFLAGS) $(AOBJS) main.o -o $@ -L. -lbwa $(LIBS) libbwa.a:$(LOBJS) $(AR) -csru $@ $(LOBJS) bwa.o:bwa.h QSufSort.o:QSufSort.h bwt.o:bwt.h bwtio.o:bwt.h bwtaln.o:bwt.h bwtaln.h kseq.h bntseq.o:bntseq.h bwtgap.o:bwtgap.h bwtaln.h bwt.h bwtsw2_core.o:bwtsw2.h bwt.h bwt_lite.h stdaln.h bwtsw2_aux.o:bwtsw2.h bwt.h bwt_lite.h stdaln.h bwtsw2_main.o:bwtsw2.h clean: rm -f gmon.out *.o a.out $(PROG) *~ *.a