comparison fits2bitmap.xml @ 3:44dbbc093fd6 draft default tip

planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit 8e0f38a23e84e67d0e199a99ec318d334f928ade

2:6b6dc2b5e52d

<tool id="astropy_fits2bitmap" name="astropy fits2bitmap" version="0.2.0+galaxy1" profile="21.05">
    <requirements>
        <requirement type="package" version="6.1.7">astropy</requirement>
        <requirement type="package" version="3.10.1">matplotlib</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
        #if $reverse_cmap:
            #set $cmap = $cmap + "_r"
        #else:
            #set $cmap = $cmap
        #end if
        fits2bitmap '$input_fits' --stretch '$stretch' --ext $hdu --cmap $cmap -o out.png
    ]]></command>
    <inputs>
        <param type="data" name="input_fits" format="fits" label="FITS file containing a sky image"/>
        <param type="integer" name="hdu"  value="0" min="0" label="Select input HDU number"/>
        <param type="select" name="stretch" label="Stretch image scale" help="Type of image scale stretching">

            <option value="tab20c">tab20c</option>
            <option value="terrain">terrain</option>
            <option value="winter">winter</option>
        </param>
        <param type="boolean" name="reverse_cmap" checked="false" label="Reverse color map"/>
    </inputs>
    <outputs>
        <data name="output_png" format="png" from_work_dir="out.png" />
    </outputs>
    <tests>
        <test>
            <param name="input_fits" value="legacysurvey_image.fits"/>
            <param name="stretch" value="log"/>
            <param name="cmap" value="jet"/>
            <output name="output_png" file="legacysurvey_image.png"/>
        </test>
    </tests>
    <help><![CDATA[
Creates a bitmap file from a FITS sky image. 
The dynamic range of the FITS image is represented in the output bitmap image by applying "stretch" transformation.

3:44dbbc093fd6

<tool id="astropy_fits2bitmap" name="astropy fits2bitmap" version="0.3.0+galaxy0" profile="24.0">
    <requirements>
        <requirement type="package" version="6.1.7">astropy</requirement>
        <requirement type="package" version="3.10.1">matplotlib</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
        #if $reverse_cmap:
            #set $cmap = $cmap + "_r"
        #else:
            #set $cmap = $cmap
        #end if
        fits2bitmap '$input_fits' --stretch '$stretch' --ext $hdu --cmap $cmap -o out.$out_format && mv out.$out_format out
    ]]></command>
    <inputs>
        <param type="data" name="input_fits" format="fits" label="FITS file containing a sky image"/>
        <param type="integer" name="hdu"  value="0" min="0" label="Select input HDU number"/>
        <param type="select" name="stretch" label="Stretch image scale" help="Type of image scale stretching">

            <option value="tab20c">tab20c</option>
            <option value="terrain">terrain</option>
            <option value="winter">winter</option>
        </param>
        <param type="boolean" name="reverse_cmap" checked="false" label="Reverse color map"/>
        <param type="select" name="out_format" label="Output format">
            <option value="png">PNG</option>
            <option value="tiff">TIFF</option>
            <option value="jpg">JPEG</option>
        </param>
    </inputs>
    <outputs>
        <data name="output_img" format="png" from_work_dir="out">
            <change_format>
                <when input="out_format" value="tiff" format="tiff"/>
                <when input="out_format" value="jpg" format="jpg"/>
            </change_format>
        </data>
    </outputs>
    <tests>
        <test>
            <param name="input_fits" value="legacysurvey_image.fits"/>
            <param name="stretch" value="log"/>
            <param name="cmap" value="jet"/>
            <param name="out_format" value="png"/>
            <output name="output_img" file="legacysurvey_image.png"/>
        </test>
        <test>
            <param name="input_fits" value="legacysurvey_image.fits"/>
            <param name="stretch" value="log"/>
            <param name="cmap" value="jet"/>
            <param name="out_format" value="tiff"/>
            <output name="output_img" file="legacysurvey_image.tiff"/>
        </test>
        <test>
            <param name="input_fits" value="legacysurvey_image.fits"/>
            <param name="stretch" value="log"/>
            <param name="cmap" value="jet"/>
            <param name="out_format" value="jpg"/>
            <output name="output_img" file="legacysurvey_image.jpg"/>
        </test>
    </tests>
    <help><![CDATA[
Creates a bitmap file from a FITS sky image. 
The dynamic range of the FITS image is represented in the output bitmap image by applying "stretch" transformation.