Mercurial > repos > astroteam > astropy_fits2bitmap
diff fits2bitmap.xml @ 0:cf608e2b1436 draft
planemo upload for repository https://github.com/esg-epfl-apc/tools-astro/tree/main/tools/astropytools commit 1ed262b482599b257c6b323b154bee2412265dbf-dirty
| author | astroteam |
|---|---|
| date | Thu, 22 Jun 2023 19:38:45 +0000 |
| parents | |
| children | c780d644a93a |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/fits2bitmap.xml Thu Jun 22 19:38:45 2023 +0000 @@ -0,0 +1,140 @@ +<tool id="astropy_fits2bitmap" name="astropy fits2bitmap" version="0.1.0+galaxy0" profile="21.05"> + <requirements> + <requirement type="package" version="5.2.2">astropy</requirement> + <requirement type="package" version="3.6.0">matplotlib</requirement> + </requirements> + <command detect_errors="exit_code"><![CDATA[ + #if $reverse_cmap: + #set $cmap = $cmap + "_r" + #else: + #set $cmap = $cmap + #end if + fits2bitmap '$input_fits' --stretch '$stretch' --cmap $cmap -o out.png + ]]></command> + <inputs> + <param type="data" name="input_fits" format="fits" label="FITS file containing a sky image"/> + <param type="select" name="stretch" label="Stretch image scale" help="Type of image scale stretching"> + <option value="linear">linear</option> + <option value="sqrt">square root</option> + <option value="power">power law</option> + <option value="log" selected="true">logarithmic</option> + <option value="asinh">asinh</option> + </param> + <param type="select" name="cmap" label="Color map" help="matplotlib color map"> + <option value="jet" selected="true">jet</option> + <option value="Accent">Accent</option> + <option value="Blues">Blues</option> + <option value="BrBG">BrBG</option> + <option value="BuGn">BuGn</option> + <option value="BuPu">BuPu</option> + <option value="CMRmap">CMRmap</option> + <option value="Dark2">Dark2</option> + <option value="GnBu">GnBu</option> + <option value="Greens">Greens</option> + <option value="Greys">Greys</option> + <option value="OrRd">OrRd</option> + <option value="Oranges">Oranges</option> + <option value="PRGn">PRGn</option> + <option value="Paired">Paired</option> + <option value="Pastel1">Pastel1</option> + <option value="Pastel2">Pastel2</option> + <option value="PiYG">PiYG</option> + <option value="PuBu">PuBu</option> + <option value="PuBuGn">PuBuGn</option> + <option value="PuOr">PuOr</option> + <option value="PuRd">PuRd</option> + <option value="Purples">Purples</option> + <option value="RdBu">RdBu</option> + <option value="RdGy">RdGy</option> + <option value="RdPu">RdPu</option> + <option value="RdYlBu">RdYlBu</option> + <option value="RdYlGn">RdYlGn</option> + <option value="Reds">Reds</option> + <option value="Set1">Set1</option> + <option value="Set2">Set2</option> + <option value="Set3">Set3</option> + <option value="Spectral">Spectral</option> + <option value="Wistia">Wistia</option> + <option value="YlGn">YlGn</option> + <option value="YlGnBu">YlGnBu</option> + <option value="YlOrBr">YlOrBr</option> + <option value="YlOrRd">YlOrRd</option> + <option value="afmhot">afmhot</option> + <option value="autumn">autumn</option> + <option value="binary">binary</option> + <option value="bone">bone</option> + <option value="brg">brg</option> + <option value="bwr">bwr</option> + <option value="cool">cool</option> + <option value="coolwarm">coolwarm</option> + <option value="copper">copper</option> + <option value="cubehelix">cubehelix</option> + <option value="flag">flag</option> + <option value="gist_earth">gist_earth</option> + <option value="gist_gray">gist_gray</option> + <option value="gist_heat">gist_heat</option> + <option value="gist_ncar">gist_ncar</option> + <option value="gist_rainbow">gist_rainbow</option> + <option value="gist_stern">gist_stern</option> + <option value="gist_yarg">gist_yarg</option> + <option value="gnuplot">gnuplot</option> + <option value="gnuplot2">gnuplot2</option> + <option value="gray">gray</option> + <option value="hot">hot</option> + <option value="hsv">hsv</option> + <option value="nipy_spectral">nipy_spectral</option> + <option value="ocean">ocean</option> + <option value="pink">pink</option> + <option value="prism">prism</option> + <option value="rainbow">rainbow</option> + <option value="seismic">seismic</option> + <option value="spring">spring</option> + <option value="summer">summer</option> + <option value="tab10">tab10</option> + <option value="tab20">tab20</option> + <option value="tab20b">tab20b</option> + <option value="tab20c">tab20c</option> + <option value="terrain">terrain</option> + <option value="winter">winter</option> + </param> + <param type="boolean" name="reverse_cmap" checked="false" label="Reverse color map"/> + </inputs> + <outputs> + <data name="output_png" format="png" from_work_dir="out.png" /> + </outputs> + <tests> + <test> + <param name="input_fits" value="legacysurvey_image.fits"/> + <param name="stretch" value="log"/> + <param name="cmap" value="jet"/> + <output name="output_png" file="legacysurvey_image.png"/> + </test> + </tests> + <help><![CDATA[ +Creates a bitmap file from a FITS sky image. +The dynamic range of the FITS image is represented in the output bitmap image by applying "stretch" transformation. +Matplotlib colormaps are used to represent resulting intensity. + +--------- + +**Example:** + +Here is an example of converting SDSS LegacySurvey image of NGC4388: + +.. image:: legacysurvey_image.png + :width: 70 % + :alt: legacysurvey_image.png + + +Note that you can also visualize FITS files directly in galaxy with interactive interface based on AladinLite. + +This tool represents a script which is part of the Astropy package. See +`astropy help <https://docs.astropy.org/en/latest/visualization/index.html#scripts>`_ +for further documentation. + ]]></help> + <citations> + <citation type="doi"> + 10.3847/1538-4357/ac7c74 + </citation> + </citations> +</tool>