Mercurial > repos > avowinkel > gatk

diff tool_dependencies.xml @ 0:b80ff7f43ad1 draft default tip

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planemo upload for repository https://github.com/kaktus42/galaxytools/tree/master/tools/gatk commit 8764cef47529f6285678af4ca24b66d0fe516b88-dirty
author avowinkel
date Thu, 24 Sep 2015 12:10:01 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu Sep 24 12:10:01 2015 -0400
@@ -0,0 +1,19 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <set_environment version="1.0">
+        <environment_variable action="set_to" name="GATK_PATH">/mnt/galaxy/tools/GATK/3.4-0</environment_variable>
+    </set_environment>
+    <!--
+    Use GATK_SITE_OPTIONS to set additional parameters that should be inserted in every GATK call.
+    The intended use case was to prohibit GATK to collect and send data.
+    For example:
+
+    -et "NO_ET" -K "/data/gatk_key_file" ##ET no phone home
+    -->
+    <set_environment version="1.0">
+        <environment_variable action="set_to" name="GATK_SITE_OPTIONS"> </environment_variable>
+    </set_environment>
+    <package name="package_r_for_gatk_3_4_0" version="3.1.2.1">
+        <repository changeset_revision="49c62e9b71ad" name="package_r_for_gatk_3_4_0" owner="avowinkel" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+</tool_dependency>