Mercurial > repos > avowinkel > package_r_for_gatk_3_4_0

changeset 0:49c62e9b71ad draft default tip

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planemo upload for repository https://github.com/kaktus42/galaxytools/tree/master/packages/package_r_for_gatk_3_4_0 commit 8764cef47529f6285678af4ca24b66d0fe516b88-dirty
author avowinkel
date Thu, 24 Sep 2015 12:08:51 -0400
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 48 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu Sep 24 12:08:51 2015 -0400
@@ -0,0 +1,48 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="R" version="3.1.2">
+        <repository changeset_revision="9f2fddb9d6e2" name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="package_r_for_gatk_3_4_0" version="3.1.2.1">
+        <install version="1.0">
+            <actions>
+                <action type="setup_r_environment">
+
+                    <repository changeset_revision="9f2fddb9d6e2" name="package_r_3_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                        <package name="R" version="3.1.2" />
+                    </repository>
+                    <package>https://github.com/cran/stringi/archive/0.5-5.tar.gz</package>
+                    <package>https://github.com/cran/magrittr/archive/1.5.tar.gz</package>
+                    <package>https://github.com/cran/stringr/archive/1.0.0.tar.gz</package>
+                    <package>https://github.com/cran/RColorBrewer/archive/1.1-2.tar.gz</package>
+                    <package>https://github.com/cran/dichromat/archive/2.0-0.tar.gz</package>
+                    <package>https://github.com/cran/colorspace/archive/1.2-6.tar.gz</package>
+                    <package>https://github.com/cran/munsell/archive/0.4.2.tar.gz</package>
+                    <package>https://github.com/cran/labeling/archive/0.3.tar.gz</package>
+                    <package>https://github.com/cran/Rcpp/archive/0.11.6.tar.gz</package>
+                    <package>https://github.com/cran/digest/archive/0.6.8.tar.gz</package>
+                    <package>https://github.com/cran/gtable/archive/0.1.2.tar.gz</package>
+                    <package>https://github.com/cran/bitops/archive/1.0-6.tar.gz</package>
+                    <package>https://github.com/cran/caTools/archive/1.17.1.tar.gz</package>
+                    <package>https://github.com/cran/gtools/archive/3.5.0.tar.gz</package>
+                    <package>https://github.com/cran/gdata/archive/2.17.0.tar.gz</package>
+                    <package>https://github.com/cran/gsalib/archive/2.1.tar.gz</package>
+                    <package>https://github.com/cran/gplots/archive/2.17.0.tar.gz</package>
+                    <package>https://github.com/cran/plyr/archive/1.8.3.tar.gz</package>
+                    <package>https://github.com/cran/reshape/archive/0.8.5.tar.gz</package>
+                    <package>https://github.com/cran/reshape2/archive/1.4.1.tar.gz</package>
+                    <package>https://github.com/cran/scales/archive/0.2.5.tar.gz</package>
+                    <package>https://github.com/cran/proto/archive/0.3-10.tar.gz</package>
+                    <package>https://github.com/cran/MASS/archive/7.3-43.tar.gz</package>
+                    <package>https://github.com/cran/ggplot2/archive/1.0.1.tar.gz</package>
+                </action>
+            </actions>
+        </install>
+        <readme>
+            ggplot2 is a plotting system for R, based on the grammar of graphics, which tries to take the good parts of base and lattice graphics and none of the bad parts.
+            It takes care of many of the fiddly details that make plotting a hassle (like drawing legends) as well as providing a powerful model of graphics that makes it easy to produce complex multi-layered graphics.
+
+            http://ggplot2.org/
+        </readme>
+    </package>
+</tool_dependency>