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13
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1 {\rtf1\ansi\ansicpg1252\cocoartf1038\cocoasubrtf360
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2 {\fonttbl\f0\fnil\fcharset0 Menlo-Regular;}
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3 {\colortbl;\red255\green255\blue255;\red166\green23\blue0;\red128\green18\blue178;}
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4 \paperw11900\paperh16840\margl1440\margr1440\vieww9000\viewh8400\viewkind0
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5 \pard\tx560\tx1120\tx1680\tx2240\tx2800\tx3360\tx3920\tx4480\tx5040\tx5600\tx6160\tx6720\tx7280\tx7840\tx8400\tx8960\tx9520\tx10080\tx10640\tx11200\tx11760\tx12320\tx12880\tx13440\tx14000\tx14560\tx15120\tx15680\tx16240\tx16800\tx17360\tx17920\tx18480\tx19040\tx19600\tx20160\tx20720\tx21280\tx21840\tx22400\tx22960\tx23520\tx24080\tx24640\tx25200\tx25760\tx26320\tx26880\tx27440\tx28000\tx28560\tx29120\tx29680\tx30240\tx30800\tx31360\tx31920\tx32480\tx33040\tx33600\tx34160\tx34720\tx35280\tx35840\tx36400\tx36960\tx37520\tx38080\tx38640\tx39200\tx39760\tx40320\tx40880\tx41440\tx42000\tx42560\tx43120\tx43680\tx44240\tx44800\tx45360\tx45920\tx46480\tx47040\tx47600\tx48160\tx48720\tx49280\tx49840\tx50400\tx50960\tx51520\tx52080\tx52640\tx53200\tx53760\tx54320\tx54880\tx55440\tx56000\ql\qnatural\pardirnatural
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6
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7 \f0\fs22 \cf2 \CocoaLigature0 \
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8 Installation tutorial for T-Coffee wrapper.\
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9 \
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10 First, you create a new section in xml file called tool_conf.xml and you the next: \
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11 \
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12 <\cf0 section id=\cf3 "aligment"\cf0 name=\cf3 "Multiple Aligment"\cf2 >\cf0 \
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13 \cf2 <\cf0 tool file=\cf3 "aligment_tcoffee/tcoffee.xml"\cf0 \cf2 />\cf0 \
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14 \cf2 </\cf0 section\cf2 >\
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15 \
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16 \
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17 \
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18 \
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19 \
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20 Afterwards, in datatypes_conf.xml, add this:\
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21 \
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22 \cf0 \cf2 <\cf0 datatype extension=\cf3 "msf"\cf0 type=\cf3 "galaxy.datatypes.data:Text"\cf0 display_in_upload=\cf3 "true"\cf2 />\cf0 \
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23 \cf2 <\cf0 datatype extension=\cf3 "clustalw"\cf0 type=\cf3 "galaxy.datatypes.data:Text"\cf0 display_in_upload=\cf3 "true"\cf2 />\cf0 \
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24 \cf2 <\cf0 datatype extension=\cf3 "pir"\cf0 type=\cf3 "galaxy.datatypes.data:Text"\cf0 display_in_upload=\cf3 "true"\cf2 />\cf0 \
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25 \cf2 <\cf0 datatype extension=\cf3 "ascii"\cf0 type=\cf3 "galaxy.datatypes.data:Text"\cf0 display_in_upload=\cf3 "true"\cf2 />\
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26 \
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27 \
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28 \
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29 Then, entry tools folder and create a folder. Into new folder, add files xml and pl. Finally, into the test-data folder, you add files name: "out3.fasta".} |
