comparison Installation.txt @ 7:52bf4368c7cf draft

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author ayllon
date Sun, 07 Sep 2014 04:42:15 -0400
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7 \f0\fs22 \cf2 \CocoaLigature0 \
8 Installation tutorial for T-Coffee wrapper.\
9 \
10 First, you create a new section in xml file called tool_conf.xml and you the next: \
11 \
12 <\cf0 section id=\cf3 "aligment"\cf0 name=\cf3 "Multiple Aligment"\cf2 >\cf0 \
13 \cf2 <\cf0 tool file=\cf3 "aligment_tcoffee/tcoffee.xml"\cf0 \cf2 />\cf0 \
14 \cf2 </\cf0 section\cf2 >\
15 \
16 \
17 \
18 \
19 \
20 Afterwards, in datatypes_conf.xml, add this:\
21 \
22 \cf0 \cf2 <\cf0 datatype extension=\cf3 "msf"\cf0 type=\cf3 "galaxy.datatypes.data:Text"\cf0 display_in_upload=\cf3 "true"\cf2 />\cf0 \
23 \cf2 <\cf0 datatype extension=\cf3 "clustalw"\cf0 type=\cf3 "galaxy.datatypes.data:Text"\cf0 display_in_upload=\cf3 "true"\cf2 />\cf0 \
24 \cf2 <\cf0 datatype extension=\cf3 "pir"\cf0 type=\cf3 "galaxy.datatypes.data:Text"\cf0 display_in_upload=\cf3 "true"\cf2 />\cf0 \
25 \cf2 <\cf0 datatype extension=\cf3 "ascii"\cf0 type=\cf3 "galaxy.datatypes.data:Text"\cf0 display_in_upload=\cf3 "true"\cf2 />\
26 \
27 \
28 \
29 Finally, entry tools folder and create a folder. Into new folder, add files xml and pl. }