Mercurial > repos > ayllon > tcoffee
changeset 7:52bf4368c7cf draft
Uploaded
| author | ayllon |
|---|---|
| date | Sun, 07 Sep 2014 04:42:15 -0400 |
| parents | ebd5908026d5 |
| children | 620741ec77ed |
| files | Installation.txt |
| diffstat | 1 files changed, 29 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Installation.txt Sun Sep 07 04:42:15 2014 -0400 @@ -0,0 +1,29 @@ +{\rtf1\ansi\ansicpg1252\cocoartf1038\cocoasubrtf360 +{\fonttbl\f0\fnil\fcharset0 Menlo-Regular;} +{\colortbl;\red255\green255\blue255;\red166\green23\blue0;\red128\green18\blue178;} +\paperw11900\paperh16840\margl1440\margr1440\vieww9000\viewh8400\viewkind0 +\pard\tx560\tx1120\tx1680\tx2240\tx2800\tx3360\tx3920\tx4480\tx5040\tx5600\tx6160\tx6720\tx7280\tx7840\tx8400\tx8960\tx9520\tx10080\tx10640\tx11200\tx11760\tx12320\tx12880\tx13440\tx14000\tx14560\tx15120\tx15680\tx16240\tx16800\tx17360\tx17920\tx18480\tx19040\tx19600\tx20160\tx20720\tx21280\tx21840\tx22400\tx22960\tx23520\tx24080\tx24640\tx25200\tx25760\tx26320\tx26880\tx27440\tx28000\tx28560\tx29120\tx29680\tx30240\tx30800\tx31360\tx31920\tx32480\tx33040\tx33600\tx34160\tx34720\tx35280\tx35840\tx36400\tx36960\tx37520\tx38080\tx38640\tx39200\tx39760\tx40320\tx40880\tx41440\tx42000\tx42560\tx43120\tx43680\tx44240\tx44800\tx45360\tx45920\tx46480\tx47040\tx47600\tx48160\tx48720\tx49280\tx49840\tx50400\tx50960\tx51520\tx52080\tx52640\tx53200\tx53760\tx54320\tx54880\tx55440\tx56000\ql\qnatural\pardirnatural + +\f0\fs22 \cf2 \CocoaLigature0 \ +Installation tutorial for T-Coffee wrapper.\ +\ +First, you create a new section in xml file called tool_conf.xml and you the next: \ +\ +<\cf0 section id=\cf3 "aligment"\cf0 name=\cf3 "Multiple Aligment"\cf2 >\cf0 \ + \cf2 <\cf0 tool file=\cf3 "aligment_tcoffee/tcoffee.xml"\cf0 \cf2 />\cf0 \ + \cf2 </\cf0 section\cf2 >\ +\ +\ +\ +\ +\ +Afterwards, in datatypes_conf.xml, add this:\ +\ +\cf0 \cf2 <\cf0 datatype extension=\cf3 "msf"\cf0 type=\cf3 "galaxy.datatypes.data:Text"\cf0 display_in_upload=\cf3 "true"\cf2 />\cf0 \ + \cf2 <\cf0 datatype extension=\cf3 "clustalw"\cf0 type=\cf3 "galaxy.datatypes.data:Text"\cf0 display_in_upload=\cf3 "true"\cf2 />\cf0 \ + \cf2 <\cf0 datatype extension=\cf3 "pir"\cf0 type=\cf3 "galaxy.datatypes.data:Text"\cf0 display_in_upload=\cf3 "true"\cf2 />\cf0 \ + \cf2 <\cf0 datatype extension=\cf3 "ascii"\cf0 type=\cf3 "galaxy.datatypes.data:Text"\cf0 display_in_upload=\cf3 "true"\cf2 />\ +\ +\ +\ +Finally, entry tools folder and create a folder. Into new folder, add files xml and pl. } \ No newline at end of file