diff autospill.xml @ 1:7f5bf24d5aeb draft

"planemo upload for repository https://github.com/AstraZeneca-Omics/immport-galaxy-tools/tree/master/flowtools/autospill commit 8fafcaef24d23a785759004c5794a9cae485dfb1"

--- a/autospill.xml	Tue May 25 00:07:20 2021 +0000
+++ b/autospill.xml	Sat Jun 19 10:57:45 2021 +0000
@@ -1,9 +1,9 @@
-<tool id="autospill" name="Autospill" version="0.1.0+galaxy0" profile="19.01" python_template_version="3.5">
+<tool id="autospill" name="Autospill" version="0.2.0+galaxy0" profile="19.01" python_template_version="3.5">
     <description>
       calculates spillover coefficients with robust linear models and then refines spillover coefficients iteratively
     </description>
     <requirements>
-      <requirement type="package" version="0.1.0">r-autospill</requirement>
+      <requirement type="package" version="0.2.0">r-autospill</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
       mkdir input_dir;
@@ -205,6 +205,20 @@
         <discover_datasets pattern="__designation_and_ext__" format="png" directory="figure_compensation" visible="true" />
       </collection> -->
     </outputs>
+    <tests>
+      <test>
+        <param name="fcs_list" value="Compensation Controls_FITC Stained Control_001.fcs,Compensation Controls_PE-CF594 Stained Control_025.fcs,Compensation Controls_PE-Cy5.5 Stained Control_027.fcs"/>
+        <param name="fcs_metadata" value="fcs_control.csv" ftype="csv"/>
+        <param name="get_figure_scatter" value="false"/>
+        <param name="get_error" value="false"/>
+        <param name="get_gates" value="false"/>
+        <output name="spillover_matrix">
+          <assert_contents>
+            <has_n_lines n="4" />
+          </assert_contents>
+        </output>
+      </test>
+    </tests>
     <help><![CDATA[
 Autospill: a principled framework that simplifies the analysis of multichromatic flow cytometry data
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