Mercurial > repos > azomics > clustergrammer_flow
changeset 1:c90127c2a1ae draft default tip
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit e47edffe14c2e8544fe0d00d932090657beae528"
| author | azomics |
|---|---|
| date | Sun, 27 Jun 2021 22:13:16 +0000 |
| parents | fee56ee2f7ac |
| children | |
| files | clustergrammerIPG.py clustergrammerIPG.xml |
| diffstat | 2 files changed, 11 insertions(+), 7 deletions(-) [+] |
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--- a/clustergrammerIPG.py Fri Jul 31 19:06:45 2020 -0400 +++ b/clustergrammerIPG.py Sun Jun 27 22:13:16 2021 +0000 @@ -13,12 +13,15 @@ from __future__ import print_function + +import os import sys -import os + +from clustergrammer import Network from jinja2 import Environment, FileSystemLoader + import pandas as pd -from clustergrammer import Network def is_integer(s): @@ -52,7 +55,8 @@ return(output_list) -def prepare_heatmap(matrix_input, html_file, html_dir, tools_dir, categories, distance, linkage): +def prepare_heatmap(matrix_input, html_file, html_dir, tools_dir, + categories, distance, linkage): # prepare directory and html os.mkdir(html_dir) @@ -91,7 +95,7 @@ } tmp_string = "-=-".join(args[8:]) - print (tmp_string + "\n") + print(tmp_string + "\n") # get categories cats = tmp_string.split("-=-new_cat-=-") for cat in cats: @@ -118,5 +122,5 @@ categories[tmp_cat[0]].append(group) print(categories) - - prepare_heatmap(args[1], args[2], args[3], args[4], categories, args[5], args[6]) + prepare_heatmap(args[1], args[2], args[3], + args[4], categories, args[5], args[6])
--- a/clustergrammerIPG.xml Fri Jul 31 19:06:45 2020 -0400 +++ b/clustergrammerIPG.xml Sun Jun 27 22:13:16 2021 +0000 @@ -1,4 +1,4 @@ -<tool id="clustergrammer_flow" name="Generate a heat map" version="1.1+galaxy0" profile="18.01"> +<tool id="clustergrammer_flow" name="Generate a heat map" version="1.1+galaxy1" profile="18.01"> <description>of a flow analysis using Clustergrammer</description> <requirements> <requirement type="package" version="2.11.2">jinja2</requirement>