diff tool_dependencies.xml @ 0:54d811ad2b52 draft

planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/cdhit/ commit ea0424ae045ac797c080aeabab9a8536f7eb2f84-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Apr 25 12:15:23 2016 -0400
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+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="cd-hit" version="4.6.4">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url" md5="d4baba1e95ba9c831a763c6b8a19ce21">https://github.com/weizhongli/cdhit/releases/download/V4.6.4/cd-hit-v4.6.4-2015-0603.tar.gz</action>
+                <action type="shell_command">make</action>
+                <action type="move_file">
+                     <source>cd-hit</source>
+                     <destination>$INSTALL_DIR</destination>
+                </action>
+                <action type="move_file">
+                      <source>cd-hit-est</source>
+                      <destination>$INSTALL_DIR</destination>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
+                    <environment_variable name="CDHIT_SITE_OPTIONS" action="set_to">"-M 4000"</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+These links provide information for building the cdhit package:
+
+http://weizhong-lab.ucsd.edu/cd-hit/
+
+https://code.google.com/p/cdhit/
+
+https://code.google.com/p/cdhit/source/browse/README
+
+Change the CDHIT_SITE_OPTIONS variable in the installed env.sh file to adjust 
+the maximum memory Mb (-M).
+        </readme>
+    </package>
+</tool_dependency>
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