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comparison test-data/humann36_pathways_input.tabular @ 3:01ac9954c27f draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/combine_metaphlan2_humann2 commit b84cbcbffa25c55acd1a31df76e4a4f78772cbd7
author bgruening
date Thu, 20 Jul 2023 10:07:12 +0000
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2:fdfb35745104 3:01ac9954c27f
1 # Pathway humann_Abundance
2 UNMAPPED 8349.9735860182
3 UNINTEGRATED 48556.8350742608
4 UNINTEGRATED|g__Acetivibrio.s__Acetivibrio_thermocellus 29162.0390929203
5 UNINTEGRATED|unclassified 3307.1774531381
6 PWY-6609: adenine and adenosine salvage III 277.0510927865
7 PWY-6609: adenine and adenosine salvage III|g__Acetivibrio.s__Acetivibrio_thermocellus 66.3688569288
8 PWY-6609: adenine and adenosine salvage III|unclassified 11.9769595308
9 PWY-1042: glycolysis IV 194.2219430842
10 PWY-5100: pyruvate fermentation to acetate and lactate II 129.0053457248
11 PWY-5100: pyruvate fermentation to acetate and lactate II|g__Acetivibrio.s__Acetivibrio_thermocellus 69.7497669984
12 PWY-7221: guanosine ribonucleotides de novo biosynthesis 121.7671397650
13 PWY-7221: guanosine ribonucleotides de novo biosynthesis|g__Acetivibrio.s__Acetivibrio_thermocellus 108.5388331853
14 PWY-7221: guanosine ribonucleotides de novo biosynthesis|unclassified 13.6910424631
15 PWY-6703: preQ0 biosynthesis 103.6377362280
16 PWY-6703: preQ0 biosynthesis|g__Acetivibrio.s__Acetivibrio_thermocellus 98.9807370179
17 PWY-7228: superpathway of guanosine nucleotides de novo biosynthesis I 83.3982268723
18 PWY-7228: superpathway of guanosine nucleotides de novo biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus 48.4938466340
19 RIBOSYN2-PWY: flavin biosynthesis I (bacteria and plants) 77.2232042652
20 RIBOSYN2-PWY: flavin biosynthesis I (bacteria and plants)|g__Acetivibrio.s__Acetivibrio_thermocellus 53.2211975186
21 VALSYN-PWY: L-valine biosynthesis 77.0829759735
22 VALSYN-PWY: L-valine biosynthesis|g__Acetivibrio.s__Acetivibrio_thermocellus 77.0829759735
23 PWY-7208: superpathway of pyrimidine nucleobases salvage 77.0563435419
24 PWY-7208: superpathway of pyrimidine nucleobases salvage|g__Acetivibrio.s__Acetivibrio_thermocellus 45.1294786723
25 PWY-7208: superpathway of pyrimidine nucleobases salvage|unclassified 17.1808137447
26 ILEUSYN-PWY: L-isoleucine biosynthesis I (from threonine) 70.6881932740
27 ILEUSYN-PWY: L-isoleucine biosynthesis I (from threonine)|g__Acetivibrio.s__Acetivibrio_thermocellus 70.6881932740
28 PWY-5981: CDP-diacylglycerol biosynthesis III 70.6859344494
29 PWY-3841: folate transformations II (plants) 68.9410605440
30 PWY-3841: folate transformations II (plants)|g__Acetivibrio.s__Acetivibrio_thermocellus 65.3076297526
31 PWY-5103: L-isoleucine biosynthesis III 66.6594375601
32 PWY-5103: L-isoleucine biosynthesis III|g__Acetivibrio.s__Acetivibrio_thermocellus 66.6594375601
33 PWY-7229: superpathway of adenosine nucleotides de novo biosynthesis I 60.8146639896
34 PWY-7229: superpathway of adenosine nucleotides de novo biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus 43.7454671075
35 PWY0-1319: CDP-diacylglycerol biosynthesis II 60.4369653934
36 PWY-5667: CDP-diacylglycerol biosynthesis I 60.4369653934
37 COA-PWY-1: superpathway of coenzyme A biosynthesis III (mammals) 53.6643541116
38 COA-PWY-1: superpathway of coenzyme A biosynthesis III (mammals)|g__Acetivibrio.s__Acetivibrio_thermocellus 44.5540259674
39 ANAGLYCOLYSIS-PWY: glycolysis III (from glucose) 53.4593266289
40 TRNA-CHARGING-PWY: tRNA charging 50.1452719795
41 TRNA-CHARGING-PWY: tRNA charging|g__Acetivibrio.s__Acetivibrio_thermocellus 40.2804860544
42 UDPNAGSYN-PWY: UDP-N-acetyl-D-glucosamine biosynthesis I 50.0293370404
43 UDPNAGSYN-PWY: UDP-N-acetyl-D-glucosamine biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus 43.2002393401
44 P41-PWY: pyruvate fermentation to acetate and (S)-lactate I 49.9950777370
45 P41-PWY: pyruvate fermentation to acetate and (S)-lactate I|g__Acetivibrio.s__Acetivibrio_thermocellus 45.0063828591
46 COA-PWY: coenzyme A biosynthesis I (prokaryotic) 46.0146775357
47 COA-PWY: coenzyme A biosynthesis I (prokaryotic)|g__Acetivibrio.s__Acetivibrio_thermocellus 37.7428378807
48 PWY-7851: coenzyme A biosynthesis II (eukaryotic) 46.0146775357
49 PWY-7851: coenzyme A biosynthesis II (eukaryotic)|g__Acetivibrio.s__Acetivibrio_thermocellus 37.7428378807
50 PWY-5695: inosine 5'-phosphate degradation 44.9825390520
51 PWY-7663: gondoate biosynthesis (anaerobic) 44.5900884307
52 PWY-7663: gondoate biosynthesis (anaerobic)|g__Acetivibrio.s__Acetivibrio_thermocellus 44.5900884307
53 PWY-6126: superpathway of adenosine nucleotides de novo biosynthesis II 44.4509651435
54 PWY-6126: superpathway of adenosine nucleotides de novo biosynthesis II|g__Acetivibrio.s__Acetivibrio_thermocellus 35.7191062812
55 BRANCHED-CHAIN-AA-SYN-PWY: superpathway of branched chain amino acid biosynthesis 43.3661409897
56 BRANCHED-CHAIN-AA-SYN-PWY: superpathway of branched chain amino acid biosynthesis|g__Acetivibrio.s__Acetivibrio_thermocellus 43.3661409897
57 PWY-6163: chorismate biosynthesis from 3-dehydroquinate 42.7003027941
58 PWY-6163: chorismate biosynthesis from 3-dehydroquinate|g__Acetivibrio.s__Acetivibrio_thermocellus 42.7002989930
59 ARO-PWY: chorismate biosynthesis I 42.3278485242
60 ARO-PWY: chorismate biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus 42.3278458563
61 PWY-7238: sucrose biosynthesis II 41.6426486664
62 PWY-7238: sucrose biosynthesis II|g__Acetivibrio.s__Acetivibrio_thermocellus 41.6426486664
63 PWY-6125: superpathway of guanosine nucleotides de novo biosynthesis II 40.3608681565
64 PWY-6125: superpathway of guanosine nucleotides de novo biosynthesis II|g__Acetivibrio.s__Acetivibrio_thermocellus 33.5353440501
65 PWY-841: superpathway of purine nucleotides de novo biosynthesis I 37.3450328428
66 PWY-841: superpathway of purine nucleotides de novo biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus 31.4817544778
67 FASYN-ELONG-PWY: fatty acid elongation -- saturated 36.9567602351
68 PWY-5973: cis-vaccenate biosynthesis 36.7150555172
69 PWY-7664: oleate biosynthesis IV (anaerobic) 36.5990400394
70 PWY0-862: (5Z)-dodecenoate biosynthesis I 36.1327148262
71 GLYCOGENSYNTH-PWY: glycogen biosynthesis I (from ADP-D-Glucose) 34.7512555037
72 GLYCOGENSYNTH-PWY: glycogen biosynthesis I (from ADP-D-Glucose)|g__Acetivibrio.s__Acetivibrio_thermocellus 34.7512555037
73 PWY-6282: palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate) 34.4754083802
74 PWY-6121: 5-aminoimidazole ribonucleotide biosynthesis I 34.4366683793
75 PWY-6121: 5-aminoimidazole ribonucleotide biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus 26.9529719544
76 NONMEVIPP-PWY: methylerythritol phosphate pathway I 33.6589833555
77 NONMEVIPP-PWY: methylerythritol phosphate pathway I|g__Acetivibrio.s__Acetivibrio_thermocellus 29.0719820809
78 PWY-6387: UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) 33.0594389993
79 PWY-6387: UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing)|g__Acetivibrio.s__Acetivibrio_thermocellus 20.8795281789
80 SER-GLYSYN-PWY: superpathway of L-serine and glycine biosynthesis I 32.8269248922
81 SER-GLYSYN-PWY: superpathway of L-serine and glycine biosynthesis I|unclassified 12.3167606082
82 PWY-6122: 5-aminoimidazole ribonucleotide biosynthesis II 30.5171500072
83 PWY-6122: 5-aminoimidazole ribonucleotide biosynthesis II|g__Acetivibrio.s__Acetivibrio_thermocellus 23.3388473782
84 PWY-6277: superpathway of 5-aminoimidazole ribonucleotide biosynthesis 30.5171500072
85 PWY-6277: superpathway of 5-aminoimidazole ribonucleotide biosynthesis|g__Acetivibrio.s__Acetivibrio_thermocellus 23.3388473782
86 PYRIDNUCSYN-PWY: NAD de novo biosynthesis I (from aspartate) 29.9045452545
87 PYRIDNUCSYN-PWY: NAD de novo biosynthesis I (from aspartate)|g__Acetivibrio.s__Acetivibrio_thermocellus 20.7694090097
88 PWY-6386: UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) 29.7827132121
89 PWY-6386: UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)|g__Acetivibrio.s__Acetivibrio_thermocellus 24.3303646214
90 PWY-6124: inosine-5'-phosphate biosynthesis II 29.6777862771
91 PWY-6124: inosine-5'-phosphate biosynthesis II|g__Acetivibrio.s__Acetivibrio_thermocellus 27.8207756981
92 PEPTIDOGLYCANSYN-PWY: peptidoglycan biosynthesis I (meso-diaminopimelate containing) 29.4351322618
93 PEPTIDOGLYCANSYN-PWY: peptidoglycan biosynthesis I (meso-diaminopimelate containing)|g__Acetivibrio.s__Acetivibrio_thermocellus 21.3306301878
94 PWY-2942: L-lysine biosynthesis III 28.9072019154
95 PWY-2942: L-lysine biosynthesis III|g__Acetivibrio.s__Acetivibrio_thermocellus 28.9072019154
96 PWY0-1296: purine ribonucleosides degradation 28.8114422948
97 PWY0-1296: purine ribonucleosides degradation|g__Acetivibrio.s__Acetivibrio_thermocellus 21.7825853640
98 PANTOSYN-PWY: superpathway of coenzyme A biosynthesis I (bacteria) 28.6286133554
99 PANTOSYN-PWY: superpathway of coenzyme A biosynthesis I (bacteria)|g__Acetivibrio.s__Acetivibrio_thermocellus 25.9318707800
100 PWY-6123: inosine-5'-phosphate biosynthesis I 28.5956903171
101 PWY-6123: inosine-5'-phosphate biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus 27.1410372715
102 PWY-6385: peptidoglycan biosynthesis III (mycobacteria) 28.0459769653
103 PWY-6385: peptidoglycan biosynthesis III (mycobacteria)|g__Acetivibrio.s__Acetivibrio_thermocellus 20.5915247014
104 PWY-7953: UDP-N-acetylmuramoyl-pentapeptide biosynthesis III (meso-diaminopimelate containing) 27.3969889419
105 PWY0-1586: peptidoglycan maturation (meso-diaminopimelate containing) 25.5073725776
106 PWY0-1586: peptidoglycan maturation (meso-diaminopimelate containing)|g__Acetivibrio.s__Acetivibrio_thermocellus 25.5073725776
107 PANTO-PWY: phosphopantothenate biosynthesis I 23.5721171877
108 PANTO-PWY: phosphopantothenate biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus 21.8182330339
109 PWY-7220: adenosine deoxyribonucleotides de novo biosynthesis II 22.4257853098
110 PWY-7220: adenosine deoxyribonucleotides de novo biosynthesis II|g__Acetivibrio.s__Acetivibrio_thermocellus 19.9656642609
111 PWY-7222: guanosine deoxyribonucleotides de novo biosynthesis II 22.4257853098
112 PWY-7222: guanosine deoxyribonucleotides de novo biosynthesis II|g__Acetivibrio.s__Acetivibrio_thermocellus 19.9656642609
113 PWY-6700: queuosine biosynthesis I (de novo) 20.5232364544
114 PWY-6700: queuosine biosynthesis I (de novo)|g__Acetivibrio.s__Acetivibrio_thermocellus 19.1237279391
115 PWY-6147: 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I 18.5007041182
116 PWY-6147: 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I|g__Acetivibrio.s__Acetivibrio_thermocellus 18.3787528306