Mercurial > repos > bebatut > combine_metaphlan2_humann2
comparison test-data/metaphlan2_input.txt @ 0:31394a0c0242 draft
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| author | bebatut |
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| date | Fri, 15 Apr 2016 09:15:21 -0400 |
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| -1:000000000000 | 0:31394a0c0242 |
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| 1 #SampleID Metaphlan2_Analysis | |
| 2 #clade_name relative_abundance coverage average_genome_length_in_the_clade estimated_number_of_reads_from_the_clade | |
| 3 k__Bacteria 93.48715 0.138259210304 3060646 423162 | |
| 4 k__Archaea 6.51285 0.00963193275713 1717866 16546 | |
| 5 k__Bacteria|p__Firmicutes 73.45294 0.108630391421 2645593 287392 | |
| 6 k__Bacteria|p__Proteobacteria 19.36391 0.0286375092603 3135748 89800 | |
| 7 k__Archaea|p__Euryarchaeota 6.51285 0.00963193275713 1954104 18822 | |
| 8 k__Bacteria|p__Actinobacteria 0.36055 0.000533224419409 3230214 1722 | |
| 9 k__Bacteria|p__Deinococcus_Thermus 0.30974 0.000458085203848 2916300 1336 | |
| 10 k__Bacteria|p__Firmicutes|c__Bacilli 72.514 0.107241784241 2708875 290505 | |
| 11 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria 13.59711 0.0201089279307 3686133 74124 | |
| 12 k__Archaea|p__Euryarchaeota|c__Methanobacteria 6.51285 0.00963193275713 1658190 15972 | |
| 13 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria 5.64659 0.00835080616008 3693177 30841 | |
| 14 k__Bacteria|p__Firmicutes|c__Clostridia 0.93894 0.00138860718019 2874996 3992 | |
| 15 k__Bacteria|p__Actinobacteria|c__Actinobacteria 0.36055 0.000533224419409 3230214 1722 | |
| 16 k__Bacteria|p__Deinococcus_Thermus|c__Deinococci 0.30974 0.000458085203848 2916300 1336 | |
| 17 k__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria 0.07678 0.000113544968539 2003141 227 | |
| 18 k__Bacteria|p__Proteobacteria|c__Betaproteobacteria 0.04343 6.42302010405e-05 3060202 197 | |
| 19 k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales 55.38558 0.0819103700977 3407631 279120 | |
| 20 k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales 17.12842 0.0253314141428 2010119 50919 | |
| 21 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacteriales 11.54704 0.017077045274 4079009 69657 | |
| 22 k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales 6.51285 0.00963193275713 1658190 15972 | |
| 23 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales 5.64659 0.00835080616008 4758592 39738 | |
| 24 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales 2.05008 0.00303188265663 4126474 12511 | |
| 25 k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales 0.93894 0.00138860718019 3127383 4343 | |
| 26 k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales 0.36055 0.000533224419409 4860922 2592 | |
| 27 k__Bacteria|p__Deinococcus_Thermus|c__Deinococci|o__Deinococcales 0.30974 0.000458085203848 3351957 1535 | |
| 28 k__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria|o__Campylobacterales 0.07678 0.000113544968539 2228417 253 | |
| 29 k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Neisseriales 0.04343 6.42302010405e-05 3161861 203 | |
| 30 k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae 55.38558 0.0819103700977 2461214 201599 | |
| 31 k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae 17.12842 0.0253314141428 2193606 55567 | |
| 32 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacteriales|f__Enterobacteriaceae 11.54704 0.017077045274 4079009 69657 | |
| 33 k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales|f__Methanobacteriaceae 6.51285 0.00963193275713 2073038 19967 | |
| 34 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales|f__Rhodobacteraceae 5.64659 0.00835080616008 5037498 42067 | |
| 35 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Pseudomonadaceae 1.92917 0.00285306704708 5434751 15506 | |
| 36 k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales|f__Clostridiaceae 0.93894 0.00138860718019 3351243 4654 | |
| 37 k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales|f__Propionibacteriaceae 0.36055 0.000533224419409 3386340 1806 | |
| 38 k__Bacteria|p__Deinococcus_Thermus|c__Deinococci|o__Deinococcales|f__Deinococcaceae 0.30974 0.000458085203848 3443517 1577 | |
| 39 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae 0.12091 0.000178815609551 2818198 504 | |
| 40 k__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria|o__Campylobacterales|f__Helicobacteraceae 0.07678 0.000113544968539 2208224 251 | |
| 41 k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Neisseriales|f__Neisseriaceae 0.04343 6.42302010405e-05 3161861 203 | |
| 42 k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus 55.38558 0.0819103700977 2627125 215189 | |
| 43 k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus 17.12842 0.0253314141428 2091707 52986 | |
| 44 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacteriales|f__Enterobacteriaceae|g__Escherichia 11.54704 0.017077045274 4803810 82035 | |
| 45 k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales|f__Methanobacteriaceae|g__Methanobrevibacter 6.51285 0.00963193275713 2273035 21894 | |
| 46 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales|f__Rhodobacteraceae|g__Rhodobacter 5.64659 0.00835080616008 3846637 32123 | |
| 47 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Pseudomonadaceae|g__Pseudomonas 1.92917 0.00285306704708 6246362 17821 | |
| 48 k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales|f__Clostridiaceae|g__Clostridium 0.93894 0.00138860718019 4612938 6406 | |
| 49 k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales|f__Propionibacteriaceae|g__Propionibacterium 0.36055 0.000533224419409 2605315 1389 | |
| 50 k__Bacteria|p__Deinococcus_Thermus|c__Deinococci|o__Deinococcales|f__Deinococcaceae|g__Deinococcus 0.30974 0.000458085203848 3443517 1577 | |
| 51 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Acinetobacter 0.12091 0.000178815609551 3719277 665 | |
| 52 k__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria|o__Campylobacterales|f__Helicobacteraceae|g__Helicobacter 0.07678 0.000113544968539 1873785 213 | |
| 53 k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Neisseriales|f__Neisseriaceae|g__Neisseria 0.04343 6.42302010405e-05 2338593 150 | |
| 54 k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus|s__Staphylococcus_aureus 28.27762 0.041820097544 2866570 119880 | |
| 55 k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus|s__Staphylococcus_epidermidis 27.10796 0.0400902725537 2525605 101252 | |
| 56 k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus|s__Streptococcus_mutans 16.30896 0.0241195042226 1908490 46032 | |
| 57 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacteriales|f__Enterobacteriaceae|g__Escherichia|s__Escherichia_coli 6.69956 0.00990806034098 5208306 51604 | |
| 58 k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales|f__Methanobacteriaceae|g__Methanobrevibacter|s__Methanobrevibacter_smithii 6.51285 0.00963193275713 1883713 18144 | |
| 59 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales|f__Rhodobacteraceae|g__Rhodobacter|s__Rhodobacter_sphaeroides 5.64659 0.00835080616008 4259863 35573 | |
| 60 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacteriales|f__Enterobacteriaceae|g__Escherichia|s__Escherichia_unclassified 4.84747 0.00716898493305 4803810 34438 | |
| 61 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Pseudomonadaceae|g__Pseudomonas|s__Pseudomonas_unclassified 1.11583 0.00165021989547 6246362 10308 | |
| 62 k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales|f__Clostridiaceae|g__Clostridium|s__Clostridium_beijerinckii 0.93894 0.00138860718019 5906224 8201 | |
| 63 k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus|s__Streptococcus_agalactiae 0.81946 0.00121190992023 2093917 2538 | |
| 64 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Pseudomonadaceae|g__Pseudomonas|s__Pseudomonas_aeruginosa 0.81333 0.00120284715161 6695839 8054 | |
| 65 k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales|f__Propionibacteriaceae|g__Propionibacterium|s__Propionibacterium_acnes 0.36055 0.000533224419409 2505029 1336 | |
| 66 k__Bacteria|p__Deinococcus_Thermus|c__Deinococci|o__Deinococcales|f__Deinococcaceae|g__Deinococcus|s__Deinococcus_unclassified 0.15778 0.000233347738069 3443517 804 | |
| 67 k__Bacteria|p__Deinococcus_Thermus|c__Deinococci|o__Deinococcales|f__Deinococcaceae|g__Deinococcus|s__Deinococcus_radiodurans 0.15196 0.000224737465779 3060986 688 | |
| 68 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Acinetobacter|s__Acinetobacter_baumannii 0.12091 0.000178815609551 3966061 709 | |
| 69 k__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria|o__Campylobacterales|f__Helicobacteraceae|g__Helicobacter|s__Helicobacter_pylori 0.07678 0.000113544968539 1635217 186 | |
| 70 k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Neisseriales|f__Neisseriaceae|g__Neisseria|s__Neisseria_meningitidis 0.04343 6.42302010405e-05 2200434 141 | |
| 71 k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus|s__Staphylococcus_aureus|t__Staphylococcus_aureus_unclassified 28.27762 0.041820097544 2866570 119880 | |
| 72 k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus|s__Staphylococcus_epidermidis|t__Staphylococcus_epidermidis_unclassified 27.10796 0.0400902725537 2525605 101252 | |
| 73 k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus|s__Streptococcus_mutans|t__Streptococcus_mutans_unclassified 16.30896 0.0241195042226 1908490 46032 | |
| 74 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacteriales|f__Enterobacteriaceae|g__Escherichia|s__Escherichia_coli|t__Escherichia_coli_unclassified 6.69956 0.00990806034098 5208306 51604 | |
| 75 k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales|f__Methanobacteriaceae|g__Methanobrevibacter|s__Methanobrevibacter_smithii|t__Methanobrevibacter_smithii_unclassified 6.51285 0.00963193275713 1883713 18144 | |
| 76 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales|f__Rhodobacteraceae|g__Rhodobacter|s__Rhodobacter_sphaeroides|t__Rhodobacter_sphaeroides_unclassified 5.64659 0.00835080616008 4259863 35573 | |
| 77 k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales|f__Clostridiaceae|g__Clostridium|s__Clostridium_beijerinckii|t__Clostridium_beijerinckii_unclassified 0.93894 0.00138860718019 5906224 8201 | |
| 78 k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus|s__Streptococcus_agalactiae|t__Streptococcus_agalactiae_unclassified 0.81946 0.00121190992023 2093917 2538 | |
| 79 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Pseudomonadaceae|g__Pseudomonas|s__Pseudomonas_aeruginosa|t__Pseudomonas_aeruginosa_unclassified 0.81333 0.00120284715161 6695839 8054 | |
| 80 k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales|f__Propionibacteriaceae|g__Propionibacterium|s__Propionibacterium_acnes|t__Propionibacterium_acnes_unclassified 0.36055 0.000533224419409 2505029 1336 | |
| 81 k__Bacteria|p__Deinococcus_Thermus|c__Deinococci|o__Deinococcales|f__Deinococcaceae|g__Deinococcus|s__Deinococcus_radiodurans|t__GCF_000008565 0.15196 0.000224737465779 3060986 688 | |
| 82 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Acinetobacter|s__Acinetobacter_baumannii|t__Acinetobacter_baumannii_unclassified 0.12091 0.000178815609551 3966061 709 | |
| 83 k__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria|o__Campylobacterales|f__Helicobacteraceae|g__Helicobacter|s__Helicobacter_pylori|t__Helicobacter_pylori_unclassified 0.07678 0.000113544968539 1635217 186 | |
| 84 k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Neisseriales|f__Neisseriaceae|g__Neisseria|s__Neisseria_meningitidis|t__Neisseria_meningitidis_unclassified 0.04343 6.42302010405e-05 2200434 141 | |
| 85 #estimated total number of reads from known clades: 439708 |