Mercurial > repos > bebatut > combine_metaphlan2_humann2
view test-data/metaphlan2_input.txt @ 4:662a334004b4 draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/combine_metaphlan2_humann2 commit 57a0433defa3cbc37ab34fbb0ebcfaeb680db8d5
| author | bgruening |
|---|---|
| date | Sat, 04 Nov 2023 18:59:48 +0000 |
| parents | 31394a0c0242 |
| children |
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#SampleID Metaphlan2_Analysis #clade_name relative_abundance coverage average_genome_length_in_the_clade estimated_number_of_reads_from_the_clade k__Bacteria 93.48715 0.138259210304 3060646 423162 k__Archaea 6.51285 0.00963193275713 1717866 16546 k__Bacteria|p__Firmicutes 73.45294 0.108630391421 2645593 287392 k__Bacteria|p__Proteobacteria 19.36391 0.0286375092603 3135748 89800 k__Archaea|p__Euryarchaeota 6.51285 0.00963193275713 1954104 18822 k__Bacteria|p__Actinobacteria 0.36055 0.000533224419409 3230214 1722 k__Bacteria|p__Deinococcus_Thermus 0.30974 0.000458085203848 2916300 1336 k__Bacteria|p__Firmicutes|c__Bacilli 72.514 0.107241784241 2708875 290505 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria 13.59711 0.0201089279307 3686133 74124 k__Archaea|p__Euryarchaeota|c__Methanobacteria 6.51285 0.00963193275713 1658190 15972 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria 5.64659 0.00835080616008 3693177 30841 k__Bacteria|p__Firmicutes|c__Clostridia 0.93894 0.00138860718019 2874996 3992 k__Bacteria|p__Actinobacteria|c__Actinobacteria 0.36055 0.000533224419409 3230214 1722 k__Bacteria|p__Deinococcus_Thermus|c__Deinococci 0.30974 0.000458085203848 2916300 1336 k__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria 0.07678 0.000113544968539 2003141 227 k__Bacteria|p__Proteobacteria|c__Betaproteobacteria 0.04343 6.42302010405e-05 3060202 197 k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales 55.38558 0.0819103700977 3407631 279120 k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales 17.12842 0.0253314141428 2010119 50919 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacteriales 11.54704 0.017077045274 4079009 69657 k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales 6.51285 0.00963193275713 1658190 15972 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales 5.64659 0.00835080616008 4758592 39738 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales 2.05008 0.00303188265663 4126474 12511 k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales 0.93894 0.00138860718019 3127383 4343 k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales 0.36055 0.000533224419409 4860922 2592 k__Bacteria|p__Deinococcus_Thermus|c__Deinococci|o__Deinococcales 0.30974 0.000458085203848 3351957 1535 k__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria|o__Campylobacterales 0.07678 0.000113544968539 2228417 253 k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Neisseriales 0.04343 6.42302010405e-05 3161861 203 k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae 55.38558 0.0819103700977 2461214 201599 k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae 17.12842 0.0253314141428 2193606 55567 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacteriales|f__Enterobacteriaceae 11.54704 0.017077045274 4079009 69657 k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales|f__Methanobacteriaceae 6.51285 0.00963193275713 2073038 19967 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales|f__Rhodobacteraceae 5.64659 0.00835080616008 5037498 42067 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Pseudomonadaceae 1.92917 0.00285306704708 5434751 15506 k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales|f__Clostridiaceae 0.93894 0.00138860718019 3351243 4654 k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales|f__Propionibacteriaceae 0.36055 0.000533224419409 3386340 1806 k__Bacteria|p__Deinococcus_Thermus|c__Deinococci|o__Deinococcales|f__Deinococcaceae 0.30974 0.000458085203848 3443517 1577 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae 0.12091 0.000178815609551 2818198 504 k__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria|o__Campylobacterales|f__Helicobacteraceae 0.07678 0.000113544968539 2208224 251 k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Neisseriales|f__Neisseriaceae 0.04343 6.42302010405e-05 3161861 203 k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus 55.38558 0.0819103700977 2627125 215189 k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus 17.12842 0.0253314141428 2091707 52986 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacteriales|f__Enterobacteriaceae|g__Escherichia 11.54704 0.017077045274 4803810 82035 k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales|f__Methanobacteriaceae|g__Methanobrevibacter 6.51285 0.00963193275713 2273035 21894 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales|f__Rhodobacteraceae|g__Rhodobacter 5.64659 0.00835080616008 3846637 32123 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Pseudomonadaceae|g__Pseudomonas 1.92917 0.00285306704708 6246362 17821 k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales|f__Clostridiaceae|g__Clostridium 0.93894 0.00138860718019 4612938 6406 k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales|f__Propionibacteriaceae|g__Propionibacterium 0.36055 0.000533224419409 2605315 1389 k__Bacteria|p__Deinococcus_Thermus|c__Deinococci|o__Deinococcales|f__Deinococcaceae|g__Deinococcus 0.30974 0.000458085203848 3443517 1577 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Acinetobacter 0.12091 0.000178815609551 3719277 665 k__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria|o__Campylobacterales|f__Helicobacteraceae|g__Helicobacter 0.07678 0.000113544968539 1873785 213 k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Neisseriales|f__Neisseriaceae|g__Neisseria 0.04343 6.42302010405e-05 2338593 150 k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus|s__Staphylococcus_aureus 28.27762 0.041820097544 2866570 119880 k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus|s__Staphylococcus_epidermidis 27.10796 0.0400902725537 2525605 101252 k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus|s__Streptococcus_mutans 16.30896 0.0241195042226 1908490 46032 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacteriales|f__Enterobacteriaceae|g__Escherichia|s__Escherichia_coli 6.69956 0.00990806034098 5208306 51604 k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales|f__Methanobacteriaceae|g__Methanobrevibacter|s__Methanobrevibacter_smithii 6.51285 0.00963193275713 1883713 18144 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales|f__Rhodobacteraceae|g__Rhodobacter|s__Rhodobacter_sphaeroides 5.64659 0.00835080616008 4259863 35573 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacteriales|f__Enterobacteriaceae|g__Escherichia|s__Escherichia_unclassified 4.84747 0.00716898493305 4803810 34438 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Pseudomonadaceae|g__Pseudomonas|s__Pseudomonas_unclassified 1.11583 0.00165021989547 6246362 10308 k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales|f__Clostridiaceae|g__Clostridium|s__Clostridium_beijerinckii 0.93894 0.00138860718019 5906224 8201 k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus|s__Streptococcus_agalactiae 0.81946 0.00121190992023 2093917 2538 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Pseudomonadaceae|g__Pseudomonas|s__Pseudomonas_aeruginosa 0.81333 0.00120284715161 6695839 8054 k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales|f__Propionibacteriaceae|g__Propionibacterium|s__Propionibacterium_acnes 0.36055 0.000533224419409 2505029 1336 k__Bacteria|p__Deinococcus_Thermus|c__Deinococci|o__Deinococcales|f__Deinococcaceae|g__Deinococcus|s__Deinococcus_unclassified 0.15778 0.000233347738069 3443517 804 k__Bacteria|p__Deinococcus_Thermus|c__Deinococci|o__Deinococcales|f__Deinococcaceae|g__Deinococcus|s__Deinococcus_radiodurans 0.15196 0.000224737465779 3060986 688 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Acinetobacter|s__Acinetobacter_baumannii 0.12091 0.000178815609551 3966061 709 k__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria|o__Campylobacterales|f__Helicobacteraceae|g__Helicobacter|s__Helicobacter_pylori 0.07678 0.000113544968539 1635217 186 k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Neisseriales|f__Neisseriaceae|g__Neisseria|s__Neisseria_meningitidis 0.04343 6.42302010405e-05 2200434 141 k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus|s__Staphylococcus_aureus|t__Staphylococcus_aureus_unclassified 28.27762 0.041820097544 2866570 119880 k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus|s__Staphylococcus_epidermidis|t__Staphylococcus_epidermidis_unclassified 27.10796 0.0400902725537 2525605 101252 k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus|s__Streptococcus_mutans|t__Streptococcus_mutans_unclassified 16.30896 0.0241195042226 1908490 46032 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacteriales|f__Enterobacteriaceae|g__Escherichia|s__Escherichia_coli|t__Escherichia_coli_unclassified 6.69956 0.00990806034098 5208306 51604 k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales|f__Methanobacteriaceae|g__Methanobrevibacter|s__Methanobrevibacter_smithii|t__Methanobrevibacter_smithii_unclassified 6.51285 0.00963193275713 1883713 18144 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales|f__Rhodobacteraceae|g__Rhodobacter|s__Rhodobacter_sphaeroides|t__Rhodobacter_sphaeroides_unclassified 5.64659 0.00835080616008 4259863 35573 k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales|f__Clostridiaceae|g__Clostridium|s__Clostridium_beijerinckii|t__Clostridium_beijerinckii_unclassified 0.93894 0.00138860718019 5906224 8201 k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus|s__Streptococcus_agalactiae|t__Streptococcus_agalactiae_unclassified 0.81946 0.00121190992023 2093917 2538 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Pseudomonadaceae|g__Pseudomonas|s__Pseudomonas_aeruginosa|t__Pseudomonas_aeruginosa_unclassified 0.81333 0.00120284715161 6695839 8054 k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales|f__Propionibacteriaceae|g__Propionibacterium|s__Propionibacterium_acnes|t__Propionibacterium_acnes_unclassified 0.36055 0.000533224419409 2505029 1336 k__Bacteria|p__Deinococcus_Thermus|c__Deinococci|o__Deinococcales|f__Deinococcaceae|g__Deinococcus|s__Deinococcus_radiodurans|t__GCF_000008565 0.15196 0.000224737465779 3060986 688 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Acinetobacter|s__Acinetobacter_baumannii|t__Acinetobacter_baumannii_unclassified 0.12091 0.000178815609551 3966061 709 k__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria|o__Campylobacterales|f__Helicobacteraceae|g__Helicobacter|s__Helicobacter_pylori|t__Helicobacter_pylori_unclassified 0.07678 0.000113544968539 1635217 186 k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Neisseriales|f__Neisseriaceae|g__Neisseria|s__Neisseria_meningitidis|t__Neisseria_meningitidis_unclassified 0.04343 6.42302010405e-05 2200434 141 #estimated total number of reads from known clades: 439708