Mercurial > repos > bebatut > compare_humann2_output
comparison test-data/specific_to_sample2_output.txt @ 0:9959fa526f1a draft
planemo upload for repository https://github.com/asaim/galaxytools/tree/master/tools/compare_humann2_output commit c16428041ae3d60b61b6570035c9268726730543-dirty
| author | bebatut |
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| date | Wed, 20 Apr 2016 08:30:08 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:9959fa526f1a |
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| 1 id name abundances | |
| 2 PWY-6731 starch degradation III 0.0336222 | |
| 3 GLUDEG-I-PWY GABA shunt 0.0537709 | |
| 4 PWY-6123 inosine 5 phosphate biosynthesis I 0.831965 | |
| 5 PWY-6769 rhamnogalacturonan type I degradation I |unclassified 0.139081 | |
| 6 PWY-6471 peptidoglycan biosynthesis IV 0.0698193 | |
| 7 PWY-7222 guanosine deoxyribonucleotides de novo biosynthesis II 1.48474 | |
| 8 PPGPPMET-PWY ppGpp biosynthesis 0.203621 | |
| 9 PWY-7234 inosine 5 phosphate biosynthesis III 0.045368 | |
| 10 PWY-5686 UMP biosynthesis|unclassified 1.7892 | |
| 11 PWY-3841 folate transformations II 2.38544 | |
| 12 P185-PWY formaldehyde assimilation III 0.103843 | |
| 13 ILEUSYN-PWY L isoleucine biosynthesis I 1.29401 | |
| 14 PWY-3001 superpathway of L isoleucine biosynthesis I 0.142024 | |
| 15 PWY-5754 4 hydroxybenzoate biosynthesis I |unclassified 0.229464 | |
| 16 PWY-6737 starch degradation V|unclassified 0.316335 | |
| 17 PWY-5104 L isoleucine biosynthesis IV 0.831272 | |
| 18 PWY-7242 D fructuronate degradation 1.03935 | |
| 19 OANTIGEN-PWY O antigen building blocks biosynthesis 0.321981 | |
| 20 PWY-5667 CDP diacylglycerol biosynthesis I|unclassified 0.149856 | |
| 21 PWY-6606 guanosine nucleotides degradation II|unclassified 0.247734 | |
| 22 PWY66-422 D galactose degradation V |unclassified 1.04266 | |
| 23 PWY66-400 glycolysis VI 0.938218 | |
| 24 PWY66-389 phytol degradation 0.548391 | |
| 25 PWY-5097 L lysine biosynthesis VI 1.04893 | |
| 26 1CMET2-PWY N10 formyl tetrahydrofolate biosynthesis|unclassified 0.834716 | |
| 27 PWY-6386 UDP N acetylmuramoyl pentapeptide biosynthesis II 0.0904748 | |
| 28 PWY4LZ-257 superpathway of fermentation 0.147873 | |
| 29 PWY-6549 L glutamine biosynthesis III 0.508899 | |
| 30 GLCMANNANAUT-PWY superpathway of N acetylglucosamine, N acetylmannosamine and N acetylneuraminate degradation|unclassified 0.123299 | |
| 31 PWY-7111 pyruvate fermentation to isobutanol |unclassified 1.73067 | |
| 32 PEPTIDOGLYCANSYN-PWY peptidoglycan biosynthesis I 0.850699 | |
| 33 PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD ME type 0.187881 | |
| 34 P241-PWY coenzyme B biosynthesis|unclassified 0.0707035 | |
| 35 PWY-6124 inosine 5 phosphate biosynthesis II|unclassified 2.22455 | |
| 36 PWY-5173 superpathway of acetyl CoA biosynthesis|unclassified 0.0785602 | |
| 37 PWY-7316 dTDP N acetylviosamine biosynthesis 0.542069 | |
| 38 PWY-5101 L isoleucine biosynthesis II|unclassified 0.617859 | |
| 39 PEPTIDOGLYCANSYN-PWY peptidoglycan biosynthesis I |unclassified 1.16221 | |
| 40 PWY-6769 rhamnogalacturonan type I degradation I 0.0634893 | |
| 41 GLUCUROCAT-PWY superpathway of β D glucuronide and D glucuronate degradation 0.838546 | |
| 42 PWY-7219 adenosine ribonucleotides de novo biosynthesis|unclassified 3.33171 | |
| 43 PWY4LZ-257 superpathway of fermentation |unclassified 0.318099 | |
| 44 ARGSYN-PWY L arginine biosynthesis I 1.16946 | |
| 45 PWY-5100 pyruvate fermentation to acetate and lactate II|unclassified 1.26625 | |
| 46 ARO-PWY chorismate biosynthesis I 0.39449 | |
| 47 ARGSYNBSUB-PWY L arginine biosynthesis II 1.02161 | |
| 48 PWY-6936 seleno amino acid biosynthesis 1.2799 | |
| 49 PWY-6595 superpathway of guanosine nucleotides degradation |unclassified 0.225538 | |
| 50 ANAGLYCOLYSIS-PWY glycolysis III 1.03937 | |
| 51 PWY0-162 superpathway of pyrimidine ribonucleotides de novo biosynthesis|unclassified 0.295685 | |
| 52 PWY-841 superpathway of purine nucleotides de novo biosynthesis I 0.531622 | |
| 53 PWY-5505 L glutamate and L glutamine biosynthesis|g__Bacteroides.s__Bacteroides_thetaiotaomicron 1.44739 | |
| 54 THRESYN-PWY superpathway of L threonine biosynthesis|unclassified 0.188356 | |
| 55 PWY-5941 glycogen degradation II 0.127166 | |
| 56 PWY-7094 fatty acid salvage 0.0597229 | |
| 57 CITRULBIO-PWY L citrulline biosynthesis|unclassified 0.49408 | |
| 58 PWY-7221 guanosine ribonucleotides de novo biosynthesis 1.88123 | |
| 59 ARGSYNBSUB-PWY L arginine biosynthesis II |unclassified 1.31054 | |
| 60 PWY-6630 superpathway of L tyrosine biosynthesis 0.319673 | |
| 61 RIBOSYN2-PWY flavin biosynthesis I |unclassified 0.213182 | |
| 62 PWY-2942 L lysine biosynthesis III|unclassified 1.10762 | |
| 63 PWY-7094 fatty acid salvage|unclassified 0.125407 | |
| 64 PWY-1042 glycolysis IV |unclassified 1.93529 | |
| 65 VALSYN-PWY L valine biosynthesis 1.29401 | |
| 66 PWY-6277 superpathway of 5 aminoimidazole ribonucleotide biosynthesis|unclassified 0.521078 | |
| 67 PWY-7219 adenosine ribonucleotides de novo biosynthesis 1.57923 | |
| 68 PWY-6309 L tryptophan degradation XI 0.0615914 | |
| 69 PWY-6703 preQ0 biosynthesis|unclassified 1.3368 | |
| 70 PWY-7007 methyl ketone biosynthesis 0.0659038 | |
| 71 PWY0-1319 CDP diacylglycerol biosynthesis II 0.384585 | |
| 72 PWY-5030 L histidine degradation III|unclassified 1.20381 | |
| 73 PWY0-162 superpathway of pyrimidine ribonucleotides de novo biosynthesis 1.19161 | |
| 74 1CMET2-PWY N10 formyl tetrahydrofolate biosynthesis 2.12689 | |
| 75 VALSYN-PWY L valine biosynthesis|unclassified 1.59474 | |
| 76 PWY-5857 ubiquinol 10 biosynthesis |unclassified 0.342548 | |
| 77 PWY-5505 L glutamate and L glutamine biosynthesis 1.53682 | |
| 78 PWY-6387 UDP N acetylmuramoyl pentapeptide biosynthesis I |unclassified 0.973219 | |
| 79 GLYCOLYSIS glycolysis I 0.769956 | |
| 80 PWY-6387 UDP N acetylmuramoyl pentapeptide biosynthesis I 0.731247 | |
| 81 PWY-7208 superpathway of pyrimidine nucleobases salvage|unclassified 1.75918 | |
| 82 PWY-5136 fatty acid β oxidation II |unclassified 0.144209 | |
| 83 PWY-6122 5 aminoimidazole ribonucleotide biosynthesis II|unclassified 0.521078 | |
| 84 PWY-2942 L lysine biosynthesis III 0.959218 | |
| 85 PWY-7222 guanosine deoxyribonucleotides de novo biosynthesis II|unclassified 2.01368 | |
| 86 PWY-6277 superpathway of 5 aminoimidazole ribonucleotide biosynthesis 0.237867 | |
| 87 PWY-6126 superpathway of adenosine nucleotides de novo biosynthesis II|unclassified 2.44065 | |
| 88 ANAEROFRUCAT-PWY homolactic fermentation|unclassified 1.57977 | |
| 89 PWY0-1061 superpathway of L alanine biosynthesis|unclassified 0.374653 | |
| 90 PYRIDNUCSYN-PWY NAD biosynthesis I |unclassified 0.68348 | |
| 91 GLYOXYLATE-BYPASS glyoxylate cycle|unclassified 0.0395503 | |
| 92 GLYCOL-GLYOXDEG-PWY superpathway of glycol metabolism and degradation 0.0175574 | |
| 93 PWY-4984 urea cycle 1.18794 | |
| 94 PWY-6549 L glutamine biosynthesis III|unclassified 0.776607 | |
| 95 PWY-6385 peptidoglycan biosynthesis III |unclassified 0.930133 | |
| 96 PWY0-1319 CDP diacylglycerol biosynthesis II|unclassified 0.149856 | |
| 97 PHOSLIPSYN-PWY superpathway of phospholipid biosynthesis I 0.460395 | |
| 98 FASYN-INITIAL-PWY superpathway of fatty acid biosynthesis initiation 0.744755 | |
| 99 PWY-7398 coumarins biosynthesis |unclassified 0.0600083 | |
| 100 PYRIDNUCSYN-PWY NAD biosynthesis I 0.361602 | |
| 101 PYRIDOXSYN-PWY pyridoxal 5 phosphate biosynthesis I|unclassified 3.41296 | |
| 102 NONOXIPENT-PWY pentose phosphate pathway 0.862082 | |
| 103 PWY-5941 glycogen degradation II |unclassified 0.241599 | |
| 104 P161-PWY acetylene degradation|unclassified 0.261072 | |
| 105 PWY-6126 superpathway of adenosine nucleotides de novo biosynthesis II 1.50984 | |
| 106 HOMOSER-METSYN-PWY L methionine biosynthesis I|unclassified 1.09381 | |
| 107 PWY-6731 starch degradation III|unclassified 0.0708616 | |
| 108 PWY-6125 superpathway of guanosine nucleotides de novo biosynthesis II 1.55645 | |
| 109 PWY-6435 4 hydroxybenzoate biosynthesis V 0.125364 | |
| 110 PWY66-389 phytol degradation|unclassified 0.638472 | |
| 111 TRNA-CHARGING-PWY tRNA charging 0.946058 | |
| 112 PWY-7237 myo , chiro and scillo inositol degradation 0.520322 | |
| 113 PWY-6527 stachyose degradation|unclassified 0.683934 | |
| 114 PWY-7007 methyl ketone biosynthesis|unclassified 0.122854 | |
| 115 PWY-6124 inosine 5 phosphate biosynthesis II 1.01549 | |
| 116 PWY-5690 TCA cycle II |unclassified 0.358601 | |
| 117 PWY0-1586 peptidoglycan maturation 0.0751931 | |
| 118 PWY-5100 pyruvate fermentation to acetate and lactate II 1.70667 | |
| 119 GLUCONEO-PWY gluconeogenesis I 1.18442 | |
| 120 PWY66-400 glycolysis VI |unclassified 0.933907 | |
| 121 PWY-5104 L isoleucine biosynthesis IV|unclassified 0.65428 | |
| 122 PWY-5754 4 hydroxybenzoate biosynthesis I 0.104748 | |
| 123 PWY-1042 glycolysis IV 1.75553 | |
| 124 PWY-4041 γ glutamyl cycle|unclassified 0.0590201 | |
| 125 SO4ASSIM-PWY sulfate reduction I 0.00696955 | |
| 126 THRESYN-PWY superpathway of L threonine biosynthesis 0.0904039 | |
| 127 PWY-6703 preQ0 biosynthesis 1.39768 | |
| 128 PWY-6163 chorismate biosynthesis from 3 dehydroquinate|unclassified 0.781711 | |
| 129 PWY-7229 superpathway of adenosine nucleotides de novo biosynthesis I 1.55872 | |
| 130 PWY-7229 superpathway of adenosine nucleotides de novo biosynthesis I|unclassified 2.61337 | |
| 131 PWY-3001 superpathway of L isoleucine biosynthesis I|unclassified 0.27671 | |
| 132 SER-GLYSYN-PWY superpathway of L serine and glycine biosynthesis I|unclassified 0.288758 | |
| 133 PWY-7111 pyruvate fermentation to isobutanol 0.876945 | |
| 134 CALVIN-PWY Calvin Benson Bassham cycle 1.79034 | |
| 135 PWY-5855 ubiquinol 7 biosynthesis 0.15637 | |
| 136 PWY-5097 L lysine biosynthesis VI|unclassified 1.16003 | |
| 137 HOMOSER-METSYN-PWY L methionine biosynthesis I 1.58217 | |
| 138 PWY66-422 D galactose degradation V |g__Bacteroides.s__Bacteroides_stercoris 1.49592 | |
| 139 PWY-7237 myo , chiro and scillo inositol degradation|unclassified 1.13983 | |
| 140 PYRIDOXSYN-PWY pyridoxal 5 phosphate biosynthesis I 2.45442 | |
| 141 PWY-5855 ubiquinol 7 biosynthesis |unclassified 0.342548 | |
| 142 PWY-5659 GDP mannose biosynthesis 1.3223 | |
| 143 FASYN-INITIAL-PWY superpathway of fatty acid biosynthesis initiation |unclassified 0.788309 | |
| 144 PWY-6507 4 deoxy L threo hex 4 enopyranuronate degradation 1.00585 | |
| 145 PWY-7388 octanoyl [acyl carrier protein] biosynthesis 0.409733 | |
| 146 PWY-6435 4 hydroxybenzoate biosynthesis V|unclassified 0.274625 | |
| 147 PWY-6122 5 aminoimidazole ribonucleotide biosynthesis II 0.237867 | |
| 148 PWY1F-823 leucopelargonidin and leucocyanidin biosynthesis|unclassified 0.109947 | |
| 149 PWY4FS-7 phosphatidylglycerol biosynthesis I 0.518363 | |
| 150 PWY-6121 5 aminoimidazole ribonucleotide biosynthesis I|unclassified 0.566097 | |
| 151 PWY-5103 L isoleucine biosynthesis III|unclassified 0.718443 | |
| 152 PWY-7316 dTDP N acetylviosamine biosynthesis|unclassified 1.10149 | |
| 153 ILEUSYN-PWY L isoleucine biosynthesis I |unclassified 1.59474 | |
| 154 GALACTUROCAT-PWY D galacturonate degradation I 1.12548 | |
| 155 P161-PWY acetylene degradation 0.119177 | |
| 156 PWY-5030 L histidine degradation III 1.22713 | |
| 157 PWY-5484 glycolysis II |unclassified 1.34471 | |
| 158 GLYCOL-GLYOXDEG-PWY superpathway of glycol metabolism and degradation|unclassified 0.0384618 | |
| 159 PWY-7211 superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis 0.250236 | |
| 160 GLYOXYLATE-BYPASS glyoxylate cycle 0.0182141 | |
| 161 PWY-7228 superpathway of guanosine nucleotides de novo biosynthesis I 1.69262 | |
| 162 PWY-6527 stachyose degradation 0.354951 | |
| 163 GLUTORN-PWY L ornithine biosynthesis 0.808734 | |
| 164 PWY-7400 L arginine biosynthesis IV 1.18235 | |
| 165 PWY-7220 adenosine deoxyribonucleotides de novo biosynthesis II|unclassified 2.01368 | |
| 166 ARO-PWY chorismate biosynthesis I|unclassified 0.783533 | |
| 167 PWY-4041 γ glutamyl cycle 0.0269421 | |
| 168 BRANCHED-CHAIN-AA-SYN-PWY superpathway of branched amino acid biosynthesis|unclassified 0.857417 | |
| 169 CALVIN-PWY Calvin Benson Bassham cycle|unclassified 2.40344 | |
| 170 PWY-5690 TCA cycle II 0.322218 | |
| 171 P105-PWY TCA cycle IV 0.262013 | |
| 172 PWY-5136 fatty acid β oxidation II 0.0698245 | |
| 173 PWY-6471 peptidoglycan biosynthesis IV |unclassified 0.142191 | |
| 174 PWY-6386 UDP N acetylmuramoyl pentapeptide biosynthesis II |unclassified 0.183333 | |
| 175 PWY-5464 superpathway of cytosolic glycolysis , pyruvate dehydrogenase and TCA cycle 0.0992505 | |
| 176 PWY-7208 superpathway of pyrimidine nucleobases salvage 2.06908 | |
| 177 ANAGLYCOLYSIS-PWY glycolysis III |unclassified 1.85171 | |
| 178 PWY-6309 L tryptophan degradation XI |unclassified 0.134924 | |
| 179 PWY4FS-8 phosphatidylglycerol biosynthesis II 0.518363 | |
| 180 PWY0-1061 superpathway of L alanine biosynthesis 0.216957 | |
| 181 PWY0-1586 peptidoglycan maturation |unclassified 0.14413 | |
| 182 PWY-7220 adenosine deoxyribonucleotides de novo biosynthesis II 1.48474 | |
| 183 P441-PWY superpathway of N acetylneuraminate degradation 0.162577 | |
| 184 SER-GLYSYN-PWY superpathway of L serine and glycine biosynthesis I 1.2955 | |
| 185 PWY-7398 coumarins biosynthesis 0.0273932 | |
| 186 UDPNAGSYN-PWY UDP N acetyl D glucosamine biosynthesis I|unclassified 0.656183 | |
| 187 PWY-5154 L arginine biosynthesis III 0.881081 | |
| 188 PWY-5484 glycolysis II 0.749543 | |
| 189 UDPNAGSYN-PWY UDP N acetyl D glucosamine biosynthesis I 0.338583 | |
| 190 ANAEROFRUCAT-PWY homolactic fermentation 0.88 | |
| 191 THISYNARA-PWY superpathway of thiamin diphosphate biosynthesis III |unclassified 0.21303 | |
| 192 PWY-6123 inosine 5 phosphate biosynthesis I|unclassified 1.82252 | |
| 193 PWY-6121 5 aminoimidazole ribonucleotide biosynthesis I 0.258418 | |
| 194 COA-PWY-1 coenzyme A biosynthesis II 1.9437 | |
| 195 PWY-6936 seleno amino acid biosynthesis|unclassified 1.32349 | |
| 196 PWY-6163 chorismate biosynthesis from 3 dehydroquinate 0.410329 | |
| 197 PWY-5667 CDP diacylglycerol biosynthesis I 0.384585 | |
| 198 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I 0.770993 | |
| 199 PWY-3841 folate transformations II|unclassified 2.27477 | |
| 200 CITRULBIO-PWY L citrulline biosynthesis 0.974607 | |
| 201 RHAMCAT-PWY L rhamnose degradation I 0.539026 | |
| 202 PWY-724 superpathway of L lysine, L threonine and L methionine biosynthesis II|unclassified 0.29625 | |
| 203 GLUTORN-PWY L ornithine biosynthesis|unclassified 0.900908 | |
| 204 PWY-5265 peptidoglycan biosynthesis II |unclassified 0.209837 | |
| 205 PWY-5464 superpathway of cytosolic glycolysis , pyruvate dehydrogenase and TCA cycle|unclassified 0.172005 | |
| 206 PWY-6606 guanosine nucleotides degradation II 0.113088 | |
| 207 OANTIGEN-PWY O antigen building blocks biosynthesis |unclassified 0.620846 | |
| 208 PWY-7388 octanoyl [acyl carrier protein] biosynthesis |unclassified 0.641891 | |
| 209 P185-PWY formaldehyde assimilation III |unclassified 0.115303 | |
| 210 METHGLYUT-PWY superpathway of methylglyoxal degradation 0.226728 | |
| 211 PWY-6737 starch degradation V 0.201137 | |
| 212 PWY-724 superpathway of L lysine, L threonine and L methionine biosynthesis II 0.142842 | |
| 213 NONOXIPENT-PWY pentose phosphate pathway |unclassified 1.8885 | |
| 214 DAPLYSINESYN-PWY L lysine biosynthesis I 0.35429 | |
| 215 PWY-6628 superpathway of L phenylalanine biosynthesis 0.49241 | |
| 216 THISYNARA-PWY superpathway of thiamin diphosphate biosynthesis III 0.0973654 | |
| 217 PWY-6385 peptidoglycan biosynthesis III 0.820786 | |
| 218 PWY1F-823 leucopelargonidin and leucocyanidin biosynthesis 0.0501896 | |
| 219 ASPASN-PWY superpathway of L aspartate and L asparagine biosynthesis 1.09751 | |
| 220 P105-PWY TCA cycle IV |unclassified 0.340536 | |
| 221 TRNA-CHARGING-PWY tRNA charging|unclassified 0.526713 | |
| 222 GALACT-GLUCUROCAT-PWY superpathway of hexuronide and hexuronate degradation 0.391566 | |
| 223 PWY-5173 superpathway of acetyl CoA biosynthesis 0.0372086 | |
| 224 FAO-PWY fatty acid β oxidation I 0.0714249 | |
| 225 P241-PWY coenzyme B biosynthesis 0.0322755 | |
| 226 COMPLETE-ARO-PWY superpathway of aromatic amino acid biosynthesis|unclassified 0.862669 | |
| 227 HISDEG-PWY L histidine degradation I 0.519408 | |
| 228 COMPLETE-ARO-PWY superpathway of aromatic amino acid biosynthesis 0.439273 | |
| 229 DAPLYSINESYN-PWY L lysine biosynthesis I|unclassified 0.314147 | |
| 230 PWY-5103 L isoleucine biosynthesis III 0.831677 | |
| 231 GLUDEG-I-PWY GABA shunt|unclassified 0.1173 | |
| 232 GLCMANNANAUT-PWY superpathway of N acetylglucosamine, N acetylmannosamine and N acetylneuraminate degradation 0.0651572 | |
| 233 P441-PWY superpathway of N acetylneuraminate degradation|unclassified 0.204428 | |
| 234 PWY-5686 UMP biosynthesis 0.980672 | |
| 235 PWY-6595 superpathway of guanosine nucleotides degradation 0.102956 | |
| 236 PWY66-422 D galactose degradation V 1.75745 | |
| 237 PWY-5505 L glutamate and L glutamine biosynthesis|unclassified 1.96045 | |
| 238 PWY-6305 putrescine biosynthesis IV 0.333385 | |
| 239 HISDEG-PWY L histidine degradation I|unclassified 0.770332 | |
| 240 PWY-5659 GDP mannose biosynthesis|unclassified 0.106616 | |
| 241 FAO-PWY fatty acid β oxidation I|unclassified 0.148771 | |
| 242 METHGLYUT-PWY superpathway of methylglyoxal degradation|unclassified 0.496676 | |
| 243 DENOVOPURINE2-PWY superpathway of purine nucleotides de novo biosynthesis II 0.14462 | |
| 244 PWY-5857 ubiquinol 10 biosynthesis 0.15637 | |
| 245 PWY-5101 L isoleucine biosynthesis II 0.492461 | |
| 246 RIBOSYN2-PWY flavin biosynthesis I 0.11474 | |
| 247 SO4ASSIM-PWY sulfate reduction I |unclassified 0.015138 | |
| 248 BRANCHED-CHAIN-AA-SYN-PWY superpathway of branched amino acid biosynthesis 1.02856 | |
| 249 PWY-5265 peptidoglycan biosynthesis II 0.106882 | |
| 250 ASPASN-PWY superpathway of L aspartate and L asparagine biosynthesis|unclassified 1.92205 | |
| 251 PWY-7234 inosine 5 phosphate biosynthesis III|unclassified 0.0993843 | |
| 252 GLYCOLYSIS glycolysis I |unclassified 1.37456 |