diff test-data/input_sequence_file.fasta @ 0:01c2b74b3a21 draft

planemo upload commit 23ef4b1699065b4f6200c58328bfecfb33dd7fd1-dirty
author bebatut
date Tue, 26 Apr 2016 08:18:18 -0400
parents
children
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/input_sequence_file.fasta	Tue Apr 26 08:18:18 2016 -0400
@@ -0,0 +1,174 @@
+>HWI-M00234:263:000000000-ADM55:1:1101:21704:2233 1:N:0:ATCACG
+GTGTACAAGGCCCGGGAACGTATTCACCGCGGCATGCTGATCCGCGATTACTAGCGATTC
+CAACTTCATACAGGCGGGTTTCAGCC
+>HWI-M00234:263:000000000-ADM55:1:1101:21334:2699 1:N:0:ATCACG
+CTTTTGACGGCCTTTTTGTTGTCTTCTGAATTTTGTTTTTTTCGGTTGTAACATAATTCC
+TAAAAATCAAATTCGTTAGCGATTATTTTTCTTTCTTTTGAAGTTCTTTCCGCCATTGTT
+TCCGCTATTGCTTCCACGACC
+>HWI-M00234:263:000000000-ADM55:1:1101:13968:2885 1:N:0:ATCACG
+CCCACTGCTGCCTCCCGTAGGAGCCTGGACCGTGTCTCAGTTCCAATGTGGCCGATCACC
+CTCTCAGGTCGGCTACCCATCGTTGCCCTGGTAAGCCATTACCCTACCAACTAGCTAATG
+GGACGCGGGCACATCTCAAAGCGGATTACCCCTTTGGTTAAAGTTTAATGCGAAACTCTA
+ACTTTATGCGTTATTAACCCTCCTTTCGGAGGGCTATTCCCCTCTTTGATGCAGGTTGCC
+CACGTGTTACTCACCCGTCCGCCGCTAATCCACTTCCCGAAGGCAGATTCAACCCTCGAT
+>HWI-M00234:263:000000000-ADM55:1:1101:11873:2948 1:N:0:ATCACG
+CCCCGTTACATCTTCCGCGCAGGAAGACTCGATCAGTGAGCTATTACGCTTTCTTTGAAG
+GATGGCTGCTTCTAAGCCAACTTCCTGACTGTCTTAGCCTTCCCACTTCGTTTTCCACTT
+AGTCAATATTAGGGACCTTAGCCGGCGGTCTGGGTTGTTTCCCTCTTGAGTCCGGACGTT
+AGCACCCGGTGCTCTGTCCCCCGTGCCCAAACTTCCAAGTATTCGGAGTTTGCCATGGTT
+TGGTAAGACGCTATGTCCCCCTAACCATAACAGTGTTCTACCCTCTGAACACATACTCGA
+>HWI-M00234:263:000000000-ADM55:1:1101:7855:3066 1:N:0:ATCACG
+CGTCAATCTTCCAACGCCCACGGCAGATAGGGACAAAACTGTCTCACGACGTTTTAAACC
+CAGCTCACGTACCTCTTTAAATGGCGAACAGCCATACCCTTGGGACCGGCTACAGC
+>HWI-M00234:263:000000000-ADM55:1:1101:24817:3238 1:N:0:ATCACG
+CCCGTGACCAGATTCATGGCCGCCGGTTAGAACCCCAGTACTGTCAGGGTGGTATCCCAA
+GGA
+>HWI-M00234:263:000000000-ADM55:1:1101:17179:3527 1:N:0:ATCACG
+GTGCTTATTTCACTTCCTCAAAATCAGCATCCTGCACATTATCGCCATGCTTT
+>HWI-M00234:263:000000000-ADM55:1:1101:21254:3571 1:N:0:ATCACG
+GTCGCGGGGAAGATCAACTCCTGCAATTCGAGCCATACCAATTACCTCCTAGCGCCCTGA
+CGCTGTTTATGACGAGGATCGCGGCTGCAGATGACGCGAATGACGCCATTGCGCTTGATC
+ACTCGGCAATACTCACAAATGGGTTTAACAGATTATCTAACCTTCATAGTTTGCACACTC
+CTCATGGACATTCC
+>HWI-M00234:263:000000000-ADM55:1:1101:16569:3709 1:N:0:ATCACG
+CCCGTCAATTCCTTTGAGTTTCATTCTTGCGAACGTACTCCCCAGGTGGAATACTTATTG
+CGTTTGCTGCGGCACCGAATGGCTTTGCCACCCGACACCTAGTATTCATCGTTTACGGCG
+TGGACTACCAGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGGA
+TCGGAAGAGCACACGTCTGAACTCCAGTCACATCCCG
+>HWI-M00234:263:000000000-ADM55:1:1101:22403:3828 1:N:0:ATCACG
+CCCGGACATCTTCGGCGCAGGATCTCTTGACTAGTGAGCTATTACGCACTCTTTAAATGA
+GTGGCTGCTTCTAAGCCAACATCCTAGTTGTCTTAGAAATCCCACATCCTTTTCCACTTA
+ACTTACACTTTGGGACCTTAGCTGATGAGATCGGAAGAGCACACGTCTGAACTCCAGTCA
+CATCACGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAAATATCAATCAAACACAC
+ACACACCAGCTTAC
+>HWI-M00234:263:000000000-ADM55:1:1101:7508:4067 1:N:0:ATCACG
+GGTGCACTAGGATCGTAGTTGGCTACTTTCCCGTTTTCAATGTATACGCAAGGTACACGG
+TCAGCGGTAGCTGCCATAATGTAATGGTAGTCAAATCCTAAGTCTCCCAATGCACATGGC
+AGTGGAGCGTTCCAATCTTGTGTACCGGCTTTGTCTCCTAATCCCAAGTGCCATTTTCCG
+ATAGCTCCGGTAGCATAACCGGTACTTTTGAACATAACCGCCATGGTATATTGTTCGGGA
+CGGATAATCATTCCGGCATTTCCGGCAGCTACG
+>HWI-M00234:263:000000000-ADM55:1:1101:26232:4161 1:N:0:ATCACG
+CTCTTCTTAAGCTCGAACAGCTTCTTCAGTCTTACCTGCCATTTCATCTAAAATTTTTAA
+AGCTCGCTCTAAAACAGTAGTATCATCAATCATAACCAATCCACCATCTGGTCCAGGTTC
+CAAGTGAATCCCAACACTTTTCCCCTCCTTAAAATTGTGTCCACCGAAAAAATTTCTTAC
+AGTGTCAACATTCAGTCCAAGTTCATCGGCTATTCTATGCATACTACCACTAGGCAATGA
+GT
+>HWI-M00234:263:000000000-ADM55:1:1101:23151:4189 1:N:0:ATCACG
+GCGGATTTTCTCGGGAGTATGATTACCCACACTATTGGATTCTTCCGAAGAAGACTCCAT
+ACTACCAAGTTCAGCTCGGATGGTGGATTTGCCTGCCAAGATCAGAAGAGCACACGTCTG
+AACTCCAGTCACATCACGACTTCGTATGCCGTATTCTGCTTGAAAAAAACAATGAAAACT
+AGTCACCGATGACTCACGTTCGCTGAACATTATCTGACAACTAGCTTAACAATGGACATG
+CTTAGCACTGACAACCAGACG
+>HWI-M00234:263:000000000-ADM55:1:1101:17148:4803 1:N:0:ATCACG
+CCCTTTTCGGCAATGGCGATGTTACGGTACATAAGAGCGATTTCGGGGAAACCTTCTTCG
+TCTGCAATATCAGCAAACTTAGGATAATCCAATGA
+>HWI-M00234:263:000000000-ADM55:1:1101:8939:4808 1:N:0:ATCACG
+CCACAGTTCTGTCATATCGCAGTACAGGAATCTCAACCTGTTGTCCATCGGCTACGGCTC
+TCGCCCTCGCCTTAGGCCCCGACTTACCCAGGGCAGATCAGCTTTA
+>HWI-M00234:263:000000000-ADM55:1:1101:11727:5103 1:N:0:ATCACG
+CTCCCGTATAGGATGGATCGAAAGCAATCGTCAGGAATCCACGTTCTGCCAATGTCTGCG
+CATACAAGCCCGAAGCTTGTTCCTTCACGGCACCAAATGGGCCACTGATGGCAATGGCAG
+GCAATTTACCCGTCACATTCTTGGGTACATACAAATCGGCGGCAAGTGTAATGCCGTAAC
+GGTTGTGGAAAG
+>HWI-M00234:263:000000000-ADM55:1:1101:15029:5173 1:N:0:ATCACG
+GGCCTATTCTCTGCGGCCGCCTTTCGGCGGCACCCCTTCTCCCGAAGTTACGGGGTCATT
+TTGCCGAGTTCCTTAACAATGCTTCTTCCGTCGGCCTTAGGATTCTCTCCTCATCCACCT
+GTGTCGGTTTACGGTACGGGTACAATATAAACAATAGCGGCTTTTCTTGACGGCCGGCTC
+ATGGGCTTCCCTACTTTAGT
+>HWI-M00234:263:000000000-ADM55:1:1101:7330:5248 1:N:0:ATCACG
+TGTGTATGAATGAGCGGCTACAGGCTTAGTCGATTTCTTTACTGCGCAGAAGCGGGACTG
+TGACCGACAAAACAGCCGTCGCCTCTCTACGTTCCGGGACCATACGCCGCTCGCAGTGAT
+TGACCCTTACAACCTTGCGGGCGCTCTC
+>HWI-M00234:263:000000000-ADM55:1:1101:18630:5353 1:N:0:ATCACG
+GGCGTGTTCTGCCAAAATAGTGCTGGGCAATATACGACATAGAAGCGAAAGGCAATACTT
+TTTCTAAGGCCTGCCTGATTTCTACTGTTTTCACAATGGCTTGGGCTTCATTGATTGATT
+GCCTGGCACCATCTTGGAATGCTTGCGCAAACGCTTTTTTATCCTCCGGTGAAAGCGTCT
+GCAGAAAAGCCCTGAAACGTTTTTTATGGTCGGCCACTTCCTCAGGAGTATTG
+>HWI-M00234:263:000000000-ADM55:1:1101:11799:5476 1:N:0:ATCACG
+CCTAAATTTTCGAGTATAAGCAGGACCGAAGCCACCAACTTATACCTTATCCTCTAAATT
+TTCGTAAGAGACATGAAGCGGATCTCTAACTATTCCCGATTTTACTGCACCACTTGATCA
+AACGCTTCGGAACAAGAGCTTTTGAGTGATGTCTCGTTTCCACCACTTTGGCAGAAATAA
+AGCTAATCTACTATGATTCGATTAAGCAGCAAGAGCATAATTTTCGTTGCCAGATAAAAT
+TT
+>HWI-M00234:263:000000000-ADM55:1:1101:11348:5668 1:N:0:ATCACG
+GCCTAAATTTTCGTGCAGCGGCAGAACCAAAGCCATCAACCGTTGCCTTATCCTCTAAAT
+TTTCACCCGCGCCACGAGGCTGACACGAACTATCCCCGATTTGACTGCACCACTTTATCG
+GAATGCTTCGGAGCAACAGCTTCCGAGTGATGTCACGTCCCAGCACCTGGTGCCGGGATT
+AAGCTTCAATCTACTATACTTCGATTAAGCAGCGAGAGCGTAACGAGTTTCGCCAGATAA
+AATTTTGAGGACTGAGATTAAAGTGAAAATC
+>HWI-M00234:263:000000000-ADM55:1:1101:25874:5826 1:N:0:ATCACG
+CCTGCAGTGGATAGGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCTCT
+TTAATGGGCGAACAGCCCAACCCTTGGGACCTTCTCCAGCCCCAGGATGAGATGAGCCGA
+CATCGAGGTGCCAAACTTTCCCGCCGATATGGACGCCCGGGCAAAATCAGCTTGTTATCC
+CCAGGGTAGCTTTTATCCGTTGAGCGACGACCCTTCCATTCGGAATCGCCGGAATACTAT
+GCCCTGCTTTCGCACCTGCCCAACCAGTCCGCCCAGCAGTTAAG
+>HWI-M00234:263:000000000-ADM55:1:1101:26932:5861 1:N:0:ATCACG
+AGCGTCAGTTACAGTCCAGAAAGCCGCCTTCGCCACTGGTGTTCTTCCTAATCTCTACGC
+ATTTCACCGCTACACTAGGAATTCCGCTTTCCTCTCCTGCACTCTAGATATCCAGTTTGG
+AATGCAGCCCCCAGGTTAAGCCCGGGGATTTCACATCCCACTTAAACATCCGCCTACGCA
+CCCTTTACCACCAGTAAATCCGGACAACGCTCGCCACCTACGTATTACCGCGGCTGCTGG
+CACGTAGTTAGCCGTGGCTTCCTCCTCTGGTACCTTCATTATCGTCCCCGAAACC
+>HWI-M00234:263:000000000-ADM55:1:1101:14154:5990 1:N:0:ATCACG
+GTGGGATGTCAAGGTAAGCGGCGGCAGCCTTGGCTACAGCAAGAGATACGCCGAGGATGG
+CATTGGCACCCAGATTGGCTTTCGTTTTGGTTCCGTCCAGTGCAAGCATGGCATGGTCGA
+TACCCATCTGGTCGAGGGCGGACATACCGATGAGCTTGGGAGCAATGATATTATTGATAT
+TGTCCACGGCTTTCAGGAC
+>HWI-M00234:263:000000000-ADM55:1:1101:25022:6229 1:N:0:ATCACG
+CCCGAGAACGTATTCACCGCAACATTGCTGATTTGCGATTACTAGTGATTCCAACTTCAT
+GTACTCGAGTTGCAGAGTACAATCCGAACTACGAACAGCTTTCTGAGGTTTGCTCCTCCT
+CGCAGATTTGCTGATCGGAAGAGCACACGTCTGAACTCCAGTCACATC
+>HWI-M00234:263:000000000-ADM55:1:1101:21023:6286 1:N:0:ATCACG
+GTGTACAAGGCCCGGGAACGTATTCACCGCGCCGTGGCTGATGCGCGATTACTAGCGAAT
+CCAGCTTCATGGAGTCGGGTTGCAGACTCCAATCCGAACTGAGAGAGGCTTTAGGGATTA
+GCATCACGTCGCCGTGTAGCTGCCTTCTGTACCCCCCATTGTAACACGTGTGTAGCCCCG
+GACGTAAGGGCCGTGCTGATTTGCCGTCATCCCCACCTTCCTCAC
+>HWI-M00234:263:000000000-ADM55:1:1101:8138:6336 1:N:0:ATCACG
+TGTGTACAAGGCCCGGGAACGTATTCACCGCGACATTCTGATTCGCGATTACTAGCAACT
+CCAGCTTCATGTAGGCGAGTTGCAGCCTACAATCCGAACTGAGATAGGTTTTATAAGTTT
+TGCTCCACCTCACGGTCTT
+>HWI-M00234:263:000000000-ADM55:1:1101:11055:6543 1:N:0:ATCACG
+CCTGGACATTTTCGGCGCAGGACCTCCCGACCAGTGAGCTATTACGCACTCTTTGACTGT
+GTGGCTGCTTCTGAGCCAACATCCTGGTTGACTTTGAAATCTCACATACTTTTCCACTTA
+ACACGCACTTTGGGACCTTAGCTGGAGGTCTTGGCTCTTTCCTTTTTGCCTATCCAACTT
+ATCTCGTATAGTCTGACTCCCGG
+>HWI-M00234:263:000000000-ADM55:1:1101:24980:6575 1:N:0:ATCACG
+GCCATTTATCTACGCCTGTTGTCACCAACAGGCTCTAGCGGTCTACCCTCCGACGTGGGG
+CGAGCAACCCTCATA
+>HWI-M00234:263:000000000-ADM55:1:1101:7596:6682 1:N:0:ATCACG
+GCCCCCGTCAATTCCTTTGAGTTTCACCGTTGCCGGCGTACTCCCCAGGTGGAATACTTA
+ACGCTTTCGCTTGGCGGCTGACAATGTATCGCCAACCGCGAGTATTCATCAGATCGGAAG
+AGCACACGTCTGAACTCCAGTCACATCCCGATCTCGTATGCCGTCCTCGGCTTGAAAAAA
+AAAAATATAAACCATGATGAATTTCGAACACTCACGACCACACACTAAGCGTCGACGTA
+>HWI-M00234:263:000000000-ADM55:1:1101:24419:6736 1:N:0:ATCACG
+CGGGCGTTGGCAAGTACGTTATATCACTTACCCACGCTCGATTCAGAACCCCAGGAGTAA
+ATGCTCGTTTTAAGAGGTTGGGATACACAGGCATGGTGTGATTACTGTCGGTGGTTTTTA
+CGGTTCGCTTAAAAAAGCGGTAACCAATGATGCCATTAAAGCGAAGGATAGCGCGTAAAC
+GTTTGACACCAACTTTCACTCCACGGTGTTGCATCAAAGC
+>HWI-M00234:263:000000000-ADM55:1:1101:5068:6755 1:N:0:ATCACG
+GCAGCGGCAGAACCAAAGCCATCAACCGTTGCCTTATCCTCTAAATTTTCACCCGCGCCA
+CGAGGCTGACACGAACTATCCCCGATTTGACTGCACCACTTTATCGGAATGCTTCGGAGC
+AACAGCTTCCGAGTGATGTCACGTCCCAGCACCTGGTGCCGGGATTAAGCTTCAATCTAC
+TATACTTCGATTAAGCAGCGAGAGCGTAACGAGTTTCGCCAGATAAAATTTTGAGGACTG
+AGATTAAAGTGCAAATC
+>HWI-M00234:263:000000000-ADM55:1:1101:21477:6796 1:N:0:ATCACG
+CCCCACTGCTGCTTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTT
+CCTCTCAGAACCCCTATCCATCGTTGACTAGGTGGGCCGTTACCCCGCCTACTATCTAAT
+GGAACGCATCCCCATCGTCTACCGGAAAATACCTT
+>HWI-M00234:263:000000000-ADM55:1:1101:12483:6880 1:N:0:ATCACG
+CTCCTTGTCTGCCTTCGATTACGGCATTTGCAATCGTTCCTGTAAGTAGTTTTACAGCTC
+TAATGGCATCGTCATTCCCTGGTATTACGTAGTCTATTTCATCAGGATCACAGTTAGTAT
+CAACTATTGCTACAACTGGTATTCCTAATATCTTCGCTTCATTTACTGCAATTCTTTCTT
+TTCTTGGATCTACAACAAATAATACATCAGGAAGACCACCCATATCTTGAATGCCACCTA
+AAAACTTTTCAA
+>HWI-M00234:263:000000000-ADM55:1:1101:27958:6935 1:N:0:ATCACG
+CCATTCGGAAATCCGCGGATCAAAGGTCATTTGCACCTACCCGCAGCTTATCGCAGCTTA
+TCACGTCCTTCATCGCCTCCGAGAGCCAAGAGATCGGAAGAGCACACGTCTGAACTCCAG
+TCACATCACGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAACCCACAAATTCACACT
+ACACACCCACCTCCCATCACGCATCTCTTTTGTCCGAGTCACGCTGCACGCTACCTGCAC
+ACTACCTGCCTCAGTTACATCTTTTTACTCAATGTCCCACCATTTATCAC
+>HWI-M00234:263:000000000-ADM55:1:1101:6151:7404 1:N:0:ATCACG
+GCACGTAGTTAGCCGGGGCTTCCTCCTAAGGTACCGTCATTATCGTCCCTTAGGACAGAG
+CTTTACGATCCGAAAACCTTCATCGCTCACGCGGCGTCGCTGCATCAGAGTTCCCTCCAT
+TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG
+TGGCCGTTCACCCTCCCAGGCCGGCTACCCATCGTCGCCTTGGTTAGCTATTACCTCCCC
+AACTAGCTAATGGGACGCGAGTCCAGCTTATACCACTTAACCGCTTTTGCTTGAAAATCA