Mercurial > repos > bebatut > convert_extract_sequence_file
diff test-data/input_sequence_file.fasta @ 0:01c2b74b3a21 draft
planemo upload commit 23ef4b1699065b4f6200c58328bfecfb33dd7fd1-dirty
author | bebatut |
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date | Tue, 26 Apr 2016 08:18:18 -0400 |
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children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/input_sequence_file.fasta Tue Apr 26 08:18:18 2016 -0400 @@ -0,0 +1,174 @@ +>HWI-M00234:263:000000000-ADM55:1:1101:21704:2233 1:N:0:ATCACG +GTGTACAAGGCCCGGGAACGTATTCACCGCGGCATGCTGATCCGCGATTACTAGCGATTC +CAACTTCATACAGGCGGGTTTCAGCC +>HWI-M00234:263:000000000-ADM55:1:1101:21334:2699 1:N:0:ATCACG +CTTTTGACGGCCTTTTTGTTGTCTTCTGAATTTTGTTTTTTTCGGTTGTAACATAATTCC +TAAAAATCAAATTCGTTAGCGATTATTTTTCTTTCTTTTGAAGTTCTTTCCGCCATTGTT +TCCGCTATTGCTTCCACGACC +>HWI-M00234:263:000000000-ADM55:1:1101:13968:2885 1:N:0:ATCACG +CCCACTGCTGCCTCCCGTAGGAGCCTGGACCGTGTCTCAGTTCCAATGTGGCCGATCACC +CTCTCAGGTCGGCTACCCATCGTTGCCCTGGTAAGCCATTACCCTACCAACTAGCTAATG +GGACGCGGGCACATCTCAAAGCGGATTACCCCTTTGGTTAAAGTTTAATGCGAAACTCTA +ACTTTATGCGTTATTAACCCTCCTTTCGGAGGGCTATTCCCCTCTTTGATGCAGGTTGCC +CACGTGTTACTCACCCGTCCGCCGCTAATCCACTTCCCGAAGGCAGATTCAACCCTCGAT +>HWI-M00234:263:000000000-ADM55:1:1101:11873:2948 1:N:0:ATCACG +CCCCGTTACATCTTCCGCGCAGGAAGACTCGATCAGTGAGCTATTACGCTTTCTTTGAAG +GATGGCTGCTTCTAAGCCAACTTCCTGACTGTCTTAGCCTTCCCACTTCGTTTTCCACTT +AGTCAATATTAGGGACCTTAGCCGGCGGTCTGGGTTGTTTCCCTCTTGAGTCCGGACGTT +AGCACCCGGTGCTCTGTCCCCCGTGCCCAAACTTCCAAGTATTCGGAGTTTGCCATGGTT +TGGTAAGACGCTATGTCCCCCTAACCATAACAGTGTTCTACCCTCTGAACACATACTCGA +>HWI-M00234:263:000000000-ADM55:1:1101:7855:3066 1:N:0:ATCACG +CGTCAATCTTCCAACGCCCACGGCAGATAGGGACAAAACTGTCTCACGACGTTTTAAACC +CAGCTCACGTACCTCTTTAAATGGCGAACAGCCATACCCTTGGGACCGGCTACAGC +>HWI-M00234:263:000000000-ADM55:1:1101:24817:3238 1:N:0:ATCACG +CCCGTGACCAGATTCATGGCCGCCGGTTAGAACCCCAGTACTGTCAGGGTGGTATCCCAA +GGA +>HWI-M00234:263:000000000-ADM55:1:1101:17179:3527 1:N:0:ATCACG +GTGCTTATTTCACTTCCTCAAAATCAGCATCCTGCACATTATCGCCATGCTTT +>HWI-M00234:263:000000000-ADM55:1:1101:21254:3571 1:N:0:ATCACG +GTCGCGGGGAAGATCAACTCCTGCAATTCGAGCCATACCAATTACCTCCTAGCGCCCTGA +CGCTGTTTATGACGAGGATCGCGGCTGCAGATGACGCGAATGACGCCATTGCGCTTGATC +ACTCGGCAATACTCACAAATGGGTTTAACAGATTATCTAACCTTCATAGTTTGCACACTC +CTCATGGACATTCC +>HWI-M00234:263:000000000-ADM55:1:1101:16569:3709 1:N:0:ATCACG +CCCGTCAATTCCTTTGAGTTTCATTCTTGCGAACGTACTCCCCAGGTGGAATACTTATTG +CGTTTGCTGCGGCACCGAATGGCTTTGCCACCCGACACCTAGTATTCATCGTTTACGGCG +TGGACTACCAGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGGA +TCGGAAGAGCACACGTCTGAACTCCAGTCACATCCCG +>HWI-M00234:263:000000000-ADM55:1:1101:22403:3828 1:N:0:ATCACG +CCCGGACATCTTCGGCGCAGGATCTCTTGACTAGTGAGCTATTACGCACTCTTTAAATGA +GTGGCTGCTTCTAAGCCAACATCCTAGTTGTCTTAGAAATCCCACATCCTTTTCCACTTA +ACTTACACTTTGGGACCTTAGCTGATGAGATCGGAAGAGCACACGTCTGAACTCCAGTCA +CATCACGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAAATATCAATCAAACACAC +ACACACCAGCTTAC +>HWI-M00234:263:000000000-ADM55:1:1101:7508:4067 1:N:0:ATCACG +GGTGCACTAGGATCGTAGTTGGCTACTTTCCCGTTTTCAATGTATACGCAAGGTACACGG +TCAGCGGTAGCTGCCATAATGTAATGGTAGTCAAATCCTAAGTCTCCCAATGCACATGGC +AGTGGAGCGTTCCAATCTTGTGTACCGGCTTTGTCTCCTAATCCCAAGTGCCATTTTCCG +ATAGCTCCGGTAGCATAACCGGTACTTTTGAACATAACCGCCATGGTATATTGTTCGGGA +CGGATAATCATTCCGGCATTTCCGGCAGCTACG +>HWI-M00234:263:000000000-ADM55:1:1101:26232:4161 1:N:0:ATCACG +CTCTTCTTAAGCTCGAACAGCTTCTTCAGTCTTACCTGCCATTTCATCTAAAATTTTTAA +AGCTCGCTCTAAAACAGTAGTATCATCAATCATAACCAATCCACCATCTGGTCCAGGTTC +CAAGTGAATCCCAACACTTTTCCCCTCCTTAAAATTGTGTCCACCGAAAAAATTTCTTAC +AGTGTCAACATTCAGTCCAAGTTCATCGGCTATTCTATGCATACTACCACTAGGCAATGA +GT +>HWI-M00234:263:000000000-ADM55:1:1101:23151:4189 1:N:0:ATCACG +GCGGATTTTCTCGGGAGTATGATTACCCACACTATTGGATTCTTCCGAAGAAGACTCCAT +ACTACCAAGTTCAGCTCGGATGGTGGATTTGCCTGCCAAGATCAGAAGAGCACACGTCTG +AACTCCAGTCACATCACGACTTCGTATGCCGTATTCTGCTTGAAAAAAACAATGAAAACT +AGTCACCGATGACTCACGTTCGCTGAACATTATCTGACAACTAGCTTAACAATGGACATG +CTTAGCACTGACAACCAGACG +>HWI-M00234:263:000000000-ADM55:1:1101:17148:4803 1:N:0:ATCACG +CCCTTTTCGGCAATGGCGATGTTACGGTACATAAGAGCGATTTCGGGGAAACCTTCTTCG +TCTGCAATATCAGCAAACTTAGGATAATCCAATGA +>HWI-M00234:263:000000000-ADM55:1:1101:8939:4808 1:N:0:ATCACG +CCACAGTTCTGTCATATCGCAGTACAGGAATCTCAACCTGTTGTCCATCGGCTACGGCTC +TCGCCCTCGCCTTAGGCCCCGACTTACCCAGGGCAGATCAGCTTTA +>HWI-M00234:263:000000000-ADM55:1:1101:11727:5103 1:N:0:ATCACG +CTCCCGTATAGGATGGATCGAAAGCAATCGTCAGGAATCCACGTTCTGCCAATGTCTGCG +CATACAAGCCCGAAGCTTGTTCCTTCACGGCACCAAATGGGCCACTGATGGCAATGGCAG +GCAATTTACCCGTCACATTCTTGGGTACATACAAATCGGCGGCAAGTGTAATGCCGTAAC +GGTTGTGGAAAG +>HWI-M00234:263:000000000-ADM55:1:1101:15029:5173 1:N:0:ATCACG +GGCCTATTCTCTGCGGCCGCCTTTCGGCGGCACCCCTTCTCCCGAAGTTACGGGGTCATT +TTGCCGAGTTCCTTAACAATGCTTCTTCCGTCGGCCTTAGGATTCTCTCCTCATCCACCT +GTGTCGGTTTACGGTACGGGTACAATATAAACAATAGCGGCTTTTCTTGACGGCCGGCTC +ATGGGCTTCCCTACTTTAGT +>HWI-M00234:263:000000000-ADM55:1:1101:7330:5248 1:N:0:ATCACG +TGTGTATGAATGAGCGGCTACAGGCTTAGTCGATTTCTTTACTGCGCAGAAGCGGGACTG +TGACCGACAAAACAGCCGTCGCCTCTCTACGTTCCGGGACCATACGCCGCTCGCAGTGAT +TGACCCTTACAACCTTGCGGGCGCTCTC +>HWI-M00234:263:000000000-ADM55:1:1101:18630:5353 1:N:0:ATCACG +GGCGTGTTCTGCCAAAATAGTGCTGGGCAATATACGACATAGAAGCGAAAGGCAATACTT +TTTCTAAGGCCTGCCTGATTTCTACTGTTTTCACAATGGCTTGGGCTTCATTGATTGATT +GCCTGGCACCATCTTGGAATGCTTGCGCAAACGCTTTTTTATCCTCCGGTGAAAGCGTCT +GCAGAAAAGCCCTGAAACGTTTTTTATGGTCGGCCACTTCCTCAGGAGTATTG +>HWI-M00234:263:000000000-ADM55:1:1101:11799:5476 1:N:0:ATCACG +CCTAAATTTTCGAGTATAAGCAGGACCGAAGCCACCAACTTATACCTTATCCTCTAAATT +TTCGTAAGAGACATGAAGCGGATCTCTAACTATTCCCGATTTTACTGCACCACTTGATCA +AACGCTTCGGAACAAGAGCTTTTGAGTGATGTCTCGTTTCCACCACTTTGGCAGAAATAA +AGCTAATCTACTATGATTCGATTAAGCAGCAAGAGCATAATTTTCGTTGCCAGATAAAAT +TT +>HWI-M00234:263:000000000-ADM55:1:1101:11348:5668 1:N:0:ATCACG +GCCTAAATTTTCGTGCAGCGGCAGAACCAAAGCCATCAACCGTTGCCTTATCCTCTAAAT +TTTCACCCGCGCCACGAGGCTGACACGAACTATCCCCGATTTGACTGCACCACTTTATCG +GAATGCTTCGGAGCAACAGCTTCCGAGTGATGTCACGTCCCAGCACCTGGTGCCGGGATT +AAGCTTCAATCTACTATACTTCGATTAAGCAGCGAGAGCGTAACGAGTTTCGCCAGATAA +AATTTTGAGGACTGAGATTAAAGTGAAAATC +>HWI-M00234:263:000000000-ADM55:1:1101:25874:5826 1:N:0:ATCACG +CCTGCAGTGGATAGGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCTCT +TTAATGGGCGAACAGCCCAACCCTTGGGACCTTCTCCAGCCCCAGGATGAGATGAGCCGA +CATCGAGGTGCCAAACTTTCCCGCCGATATGGACGCCCGGGCAAAATCAGCTTGTTATCC +CCAGGGTAGCTTTTATCCGTTGAGCGACGACCCTTCCATTCGGAATCGCCGGAATACTAT +GCCCTGCTTTCGCACCTGCCCAACCAGTCCGCCCAGCAGTTAAG +>HWI-M00234:263:000000000-ADM55:1:1101:26932:5861 1:N:0:ATCACG +AGCGTCAGTTACAGTCCAGAAAGCCGCCTTCGCCACTGGTGTTCTTCCTAATCTCTACGC +ATTTCACCGCTACACTAGGAATTCCGCTTTCCTCTCCTGCACTCTAGATATCCAGTTTGG +AATGCAGCCCCCAGGTTAAGCCCGGGGATTTCACATCCCACTTAAACATCCGCCTACGCA +CCCTTTACCACCAGTAAATCCGGACAACGCTCGCCACCTACGTATTACCGCGGCTGCTGG +CACGTAGTTAGCCGTGGCTTCCTCCTCTGGTACCTTCATTATCGTCCCCGAAACC +>HWI-M00234:263:000000000-ADM55:1:1101:14154:5990 1:N:0:ATCACG +GTGGGATGTCAAGGTAAGCGGCGGCAGCCTTGGCTACAGCAAGAGATACGCCGAGGATGG +CATTGGCACCCAGATTGGCTTTCGTTTTGGTTCCGTCCAGTGCAAGCATGGCATGGTCGA +TACCCATCTGGTCGAGGGCGGACATACCGATGAGCTTGGGAGCAATGATATTATTGATAT +TGTCCACGGCTTTCAGGAC +>HWI-M00234:263:000000000-ADM55:1:1101:25022:6229 1:N:0:ATCACG +CCCGAGAACGTATTCACCGCAACATTGCTGATTTGCGATTACTAGTGATTCCAACTTCAT +GTACTCGAGTTGCAGAGTACAATCCGAACTACGAACAGCTTTCTGAGGTTTGCTCCTCCT +CGCAGATTTGCTGATCGGAAGAGCACACGTCTGAACTCCAGTCACATC +>HWI-M00234:263:000000000-ADM55:1:1101:21023:6286 1:N:0:ATCACG +GTGTACAAGGCCCGGGAACGTATTCACCGCGCCGTGGCTGATGCGCGATTACTAGCGAAT +CCAGCTTCATGGAGTCGGGTTGCAGACTCCAATCCGAACTGAGAGAGGCTTTAGGGATTA +GCATCACGTCGCCGTGTAGCTGCCTTCTGTACCCCCCATTGTAACACGTGTGTAGCCCCG +GACGTAAGGGCCGTGCTGATTTGCCGTCATCCCCACCTTCCTCAC +>HWI-M00234:263:000000000-ADM55:1:1101:8138:6336 1:N:0:ATCACG +TGTGTACAAGGCCCGGGAACGTATTCACCGCGACATTCTGATTCGCGATTACTAGCAACT +CCAGCTTCATGTAGGCGAGTTGCAGCCTACAATCCGAACTGAGATAGGTTTTATAAGTTT +TGCTCCACCTCACGGTCTT +>HWI-M00234:263:000000000-ADM55:1:1101:11055:6543 1:N:0:ATCACG +CCTGGACATTTTCGGCGCAGGACCTCCCGACCAGTGAGCTATTACGCACTCTTTGACTGT +GTGGCTGCTTCTGAGCCAACATCCTGGTTGACTTTGAAATCTCACATACTTTTCCACTTA +ACACGCACTTTGGGACCTTAGCTGGAGGTCTTGGCTCTTTCCTTTTTGCCTATCCAACTT +ATCTCGTATAGTCTGACTCCCGG +>HWI-M00234:263:000000000-ADM55:1:1101:24980:6575 1:N:0:ATCACG +GCCATTTATCTACGCCTGTTGTCACCAACAGGCTCTAGCGGTCTACCCTCCGACGTGGGG +CGAGCAACCCTCATA +>HWI-M00234:263:000000000-ADM55:1:1101:7596:6682 1:N:0:ATCACG +GCCCCCGTCAATTCCTTTGAGTTTCACCGTTGCCGGCGTACTCCCCAGGTGGAATACTTA +ACGCTTTCGCTTGGCGGCTGACAATGTATCGCCAACCGCGAGTATTCATCAGATCGGAAG +AGCACACGTCTGAACTCCAGTCACATCCCGATCTCGTATGCCGTCCTCGGCTTGAAAAAA +AAAAATATAAACCATGATGAATTTCGAACACTCACGACCACACACTAAGCGTCGACGTA +>HWI-M00234:263:000000000-ADM55:1:1101:24419:6736 1:N:0:ATCACG +CGGGCGTTGGCAAGTACGTTATATCACTTACCCACGCTCGATTCAGAACCCCAGGAGTAA +ATGCTCGTTTTAAGAGGTTGGGATACACAGGCATGGTGTGATTACTGTCGGTGGTTTTTA +CGGTTCGCTTAAAAAAGCGGTAACCAATGATGCCATTAAAGCGAAGGATAGCGCGTAAAC +GTTTGACACCAACTTTCACTCCACGGTGTTGCATCAAAGC +>HWI-M00234:263:000000000-ADM55:1:1101:5068:6755 1:N:0:ATCACG +GCAGCGGCAGAACCAAAGCCATCAACCGTTGCCTTATCCTCTAAATTTTCACCCGCGCCA +CGAGGCTGACACGAACTATCCCCGATTTGACTGCACCACTTTATCGGAATGCTTCGGAGC +AACAGCTTCCGAGTGATGTCACGTCCCAGCACCTGGTGCCGGGATTAAGCTTCAATCTAC +TATACTTCGATTAAGCAGCGAGAGCGTAACGAGTTTCGCCAGATAAAATTTTGAGGACTG +AGATTAAAGTGCAAATC +>HWI-M00234:263:000000000-ADM55:1:1101:21477:6796 1:N:0:ATCACG +CCCCACTGCTGCTTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTT +CCTCTCAGAACCCCTATCCATCGTTGACTAGGTGGGCCGTTACCCCGCCTACTATCTAAT +GGAACGCATCCCCATCGTCTACCGGAAAATACCTT +>HWI-M00234:263:000000000-ADM55:1:1101:12483:6880 1:N:0:ATCACG +CTCCTTGTCTGCCTTCGATTACGGCATTTGCAATCGTTCCTGTAAGTAGTTTTACAGCTC +TAATGGCATCGTCATTCCCTGGTATTACGTAGTCTATTTCATCAGGATCACAGTTAGTAT +CAACTATTGCTACAACTGGTATTCCTAATATCTTCGCTTCATTTACTGCAATTCTTTCTT +TTCTTGGATCTACAACAAATAATACATCAGGAAGACCACCCATATCTTGAATGCCACCTA +AAAACTTTTCAA +>HWI-M00234:263:000000000-ADM55:1:1101:27958:6935 1:N:0:ATCACG +CCATTCGGAAATCCGCGGATCAAAGGTCATTTGCACCTACCCGCAGCTTATCGCAGCTTA +TCACGTCCTTCATCGCCTCCGAGAGCCAAGAGATCGGAAGAGCACACGTCTGAACTCCAG +TCACATCACGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAACCCACAAATTCACACT +ACACACCCACCTCCCATCACGCATCTCTTTTGTCCGAGTCACGCTGCACGCTACCTGCAC +ACTACCTGCCTCAGTTACATCTTTTTACTCAATGTCCCACCATTTATCAC +>HWI-M00234:263:000000000-ADM55:1:1101:6151:7404 1:N:0:ATCACG +GCACGTAGTTAGCCGGGGCTTCCTCCTAAGGTACCGTCATTATCGTCCCTTAGGACAGAG +CTTTACGATCCGAAAACCTTCATCGCTCACGCGGCGTCGCTGCATCAGAGTTCCCTCCAT +TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG +TGGCCGTTCACCCTCCCAGGCCGGCTACCCATCGTCGCCTTGGTTAGCTATTACCTCCCC +AACTAGCTAATGGGACGCGAGTCCAGCTTATACCACTTAACCGCTTTTGCTTGAAAATCA