Mercurial > repos > bebatut > export2graphlan

annotate test-data/annotation_output.txt @ 1:d7cf3b50a074 draft default tip

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 3472a70f35769aaeafa40e8fbce97aac2c4ea4f8-dirty
author bebatut
date Tue, 21 Jun 2016 08:05:01 -0400
parents b344522045f3
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
bebatut
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diff changeset
1 clade_separation 0.5
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
bebatut
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2 branch_bracket_depth 0.8
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
bebatut
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3 branch_bracket_width 0.2
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
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4 annotation_legend_font_size 10
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
bebatut
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5 class_legend_font_size 10
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
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6 class_legend_marker_size 1.5
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
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7
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
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8 FIRMICUTES annotation FIRMICUTES
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
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9 FIRMICUTES clade_marker_color #2d19ff
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
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10 FIRMICUTES clade_marker_size 40
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
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11
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
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12 PROTEOBACTERIA annotation PROTEOBACTERIA
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
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13 PROTEOBACTERIA clade_marker_color #29cc36
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
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14 PROTEOBACTERIA clade_marker_size 40
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
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15
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
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16 k__Archaea clade_marker_size 58.0748302504
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
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17 p__Euryarchaeota clade_marker_size 58.0748302504
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
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18 c__Methanobacteria clade_marker_size 58.0748302504
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
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19 o__Methanobacteriales clade_marker_size 58.0748302504
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
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20 f__Methanobacteriaceae clade_marker_size 58.0748302504
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
bebatut
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21 g__Methanobrevibacter clade_marker_size 58.0748302504
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
bebatut
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22 s__Methanobrevibacter_smithii clade_marker_size 58.0748302504
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
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23 t__Methanobrevibacter_smithii_unclassified clade_marker_size 58.0748302504
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
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24 k__Bacteria clade_marker_size 200.0
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
bebatut
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25 p__Actinobacteria clade_marker_size 22.66961905
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
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26 c__Actinobacteria clade_marker_size 22.66961905
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
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27 o__Actinomycetales clade_marker_size 22.66961905
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
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28 f__Propionibacteriaceae clade_marker_size 22.66961905
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
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29 g__Propionibacterium clade_marker_size 22.66961905
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
bebatut
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30 s__Propionibacterium_acnes clade_marker_size 22.66961905
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
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31 t__Propionibacterium_acnes_unclassified clade_marker_size 22.66961905
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
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32 p__Deinococcus_Thermus clade_marker_size 22.298886707
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
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33 c__Deinococci clade_marker_size 22.298886707
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
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34 o__Deinococcales clade_marker_size 22.298886707
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
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35 f__Deinococcaceae clade_marker_size 22.298886707
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
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36 g__Deinococcus clade_marker_size 22.298886707
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
bebatut
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37 s__Deinococcus_radiodurans clade_marker_size 21.1340492974
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
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38 t__GCF_000008565 clade_marker_size 21.1340492974
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
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39 s__Deinococcus_unclassified clade_marker_size 21.1817307606
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
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40 p__Firmicutes clade_marker_size 183.285013514
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
bebatut
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41 p__Firmicutes clade_marker_color #2d19ff
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
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42 c__Bacilli clade_marker_size 182.398015269
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
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43 c__Bacilli clade_marker_color #2d19ff
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
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44 o__Bacillales clade_marker_size 164.332515943
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
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45 o__Bacillales clade_marker_color #2d19ff
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
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46 f__Staphylococcaceae clade_marker_size 164.332515943
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
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47 f__Staphylococcaceae clade_marker_color #2d19ff
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
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48 g__Staphylococcus clade_marker_size 164.332515943
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
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49 g__Staphylococcus clade_marker_color #2d19ff
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50 s__Staphylococcus_aureus clade_marker_size 122.793996615
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51 s__Staphylococcus_aureus clade_marker_color #2d19ff
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52 t__Staphylococcus_aureus_unclassified clade_marker_size 122.793996615
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53 t__Staphylococcus_aureus_unclassified clade_marker_color #2d19ff
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
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54 s__Staphylococcus_epidermidis clade_marker_size 120.392106048
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55 s__Staphylococcus_epidermidis clade_marker_color #2d19ff
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56 t__Staphylococcus_epidermidis_unclassified clade_marker_size 120.392106048
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57 t__Staphylococcus_epidermidis_unclassified clade_marker_color #2d19ff
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58 o__Lactobacillales clade_marker_size 96.1062970373
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59 f__Streptococcaceae clade_marker_size 96.1062970373
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60 g__Streptococcus clade_marker_size 96.1062970373
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61 s__Streptococcus_agalactiae clade_marker_size 25.9449465996
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62 t__Streptococcus_agalactiae_unclassified clade_marker_size 25.9449465996
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63 s__Streptococcus_mutans clade_marker_size 93.7375603
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64 t__Streptococcus_mutans_unclassified clade_marker_size 93.7375603
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65 c__Clostridia clade_marker_size 26.8159954288
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66 o__Clostridiales clade_marker_size 26.8159954288
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67 f__Clostridiaceae clade_marker_size 26.8159954288
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68 g__Clostridium clade_marker_size 26.8159954288
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69 s__Clostridium_beijerinckii clade_marker_size 26.8159954288
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70 t__Clostridium_beijerinckii_unclassified clade_marker_size 26.8159954288
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71 p__Proteobacteria clade_marker_size 102.159086265
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72 p__Proteobacteria clade_marker_color #29cc36
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73 c__Alphaproteobacteria clade_marker_size 53.6955516997
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74 o__Rhodobacterales clade_marker_size 53.6955516997
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75 f__Rhodobacteraceae clade_marker_size 53.6955516997
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76 g__Rhodobacter clade_marker_size 53.6955516997
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77 s__Rhodobacter_sphaeroides clade_marker_size 53.6955516997
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78 t__Rhodobacter_sphaeroides_unclassified clade_marker_size 53.6955516997
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79 c__Betaproteobacteria clade_marker_size 20.3264778878
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80 o__Neisseriales clade_marker_size 20.3264778878
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81 f__Neisseriaceae clade_marker_size 20.3264778878
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82 g__Neisseria clade_marker_size 20.3264778878
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
bebatut
parents:
diff changeset
83 s__Neisseria_meningitidis clade_marker_size 20.3264778878
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
bebatut
parents:
diff changeset
84 t__Neisseria_meningitidis_unclassified clade_marker_size 20.3264778878
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
bebatut
parents:
diff changeset
85 c__Epsilonproteobacteria clade_marker_size 20.5761787104
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
bebatut
parents:
diff changeset
86 o__Campylobacterales clade_marker_size 20.5761787104
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
bebatut
parents:
diff changeset
87 f__Helicobacteraceae clade_marker_size 20.5761787104
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
bebatut
parents:
diff changeset
88 g__Helicobacter clade_marker_size 20.5761787104
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
bebatut
parents:
diff changeset
89 s__Helicobacter_pylori clade_marker_size 20.5761787104
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
bebatut
parents:
diff changeset
90 t__Helicobacter_pylori_unclassified clade_marker_size 20.5761787104
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
bebatut
parents:
diff changeset
91 c__Gammaproteobacteria clade_marker_size 85.4517057547
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
bebatut
parents:
diff changeset
92 o__Enterobacteriales clade_marker_size 78.466031643
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
bebatut
parents:
diff changeset
93 f__Enterobacteriaceae clade_marker_size 78.466031643
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
bebatut
parents:
diff changeset
94 g__Escherichia clade_marker_size 78.466031643
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
bebatut
parents:
diff changeset
95 s__Escherichia_coli clade_marker_size 58.9341374431
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
bebatut
parents:
diff changeset
96 t__Escherichia_coli_unclassified clade_marker_size 58.9341374431
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
bebatut
parents:
diff changeset
97 s__Escherichia_unclassified clade_marker_size 49.960616022
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
bebatut
parents:
diff changeset
98 o__Pseudomonadales clade_marker_size 34.0879564025
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
bebatut
parents:
diff changeset
99 f__Moraxellaceae clade_marker_size 20.9013800671
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
bebatut
parents:
diff changeset
100 g__Acinetobacter clade_marker_size 20.9013800671
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
bebatut
parents:
diff changeset
101 s__Acinetobacter_baumannii clade_marker_size 20.9013800671
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
bebatut
parents:
diff changeset
102 t__Acinetobacter_baumannii_unclassified clade_marker_size 20.9013800671
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
bebatut
parents:
diff changeset
103 f__Pseudomonadaceae clade_marker_size 33.3271759768
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
bebatut
parents:
diff changeset
104 g__Pseudomonas clade_marker_size 33.3271759768
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
bebatut
parents:
diff changeset
105 s__Pseudomonas_aeruginosa clade_marker_size 25.8720239085
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
bebatut
parents:
diff changeset
106 t__Pseudomonas_aeruginosa_unclassified clade_marker_size 25.8720239085
b344522045f3 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
bebatut
parents:
diff changeset
107 s__Pseudomonas_unclassified clade_marker_size 28.0078913105