Mercurial > repos > bebatut > format_metaphlan2_output
comparison test-data/metaphlan2_output.txt @ 0:2bfa9b200600 draft
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/format_metaphlan2_output/ commit 36388cac89e4ffa55fe317d10cbf97346ab00a71-dirty
| author | bebatut |
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| date | Wed, 20 Apr 2016 07:52:41 -0400 |
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| -1:000000000000 | 0:2bfa9b200600 |
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| 1 #SampleID Metaphlan2_Analysis | |
| 2 k__Bacteria 99.20573 | |
| 3 k__Archaea 0.79427 | |
| 4 k__Bacteria|p__Deinococcus_Thermus 45.20297 | |
| 5 k__Bacteria|p__Firmicutes 19.15406 | |
| 6 k__Bacteria|p__Proteobacteria 16.57369 | |
| 7 k__Bacteria|p__Actinobacteria 10.37863 | |
| 8 k__Bacteria|p__Bacteroidetes 7.89639 | |
| 9 k__Archaea|p__Euryarchaeota 0.79427 | |
| 10 k__Bacteria|p__Deinococcus_Thermus|c__Deinococci 45.20297 | |
| 11 k__Bacteria|p__Firmicutes|c__Bacilli 17.33469 | |
| 12 k__Bacteria|p__Actinobacteria|c__Actinobacteria 10.37863 | |
| 13 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria 8.28554 | |
| 14 k__Bacteria|p__Bacteroidetes|c__Bacteroidia 7.89639 | |
| 15 k__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria 4.03024 | |
| 16 k__Bacteria|p__Proteobacteria|c__Betaproteobacteria 3.73739 | |
| 17 k__Bacteria|p__Firmicutes|c__Clostridia 1.81937 | |
| 18 k__Archaea|p__Euryarchaeota|c__Methanobacteria 0.79427 | |
| 19 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria 0.52051 | |
| 20 k__Bacteria|p__Deinococcus_Thermus|c__Deinococci|o__Deinococcales 45.20297 | |
| 21 k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales 10.37863 | |
| 22 k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales 9.19153 | |
| 23 k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales 8.14315 | |
| 24 k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales 7.89639 | |
| 25 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales 6.58945 | |
| 26 k__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria|o__Campylobacterales 4.03024 | |
| 27 k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Neisseriales 3.73739 | |
| 28 k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales 1.81937 | |
| 29 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacteriales 1.6961 | |
| 30 k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales 0.79427 | |
| 31 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales 0.52051 | |
| 32 k__Bacteria|p__Deinococcus_Thermus|c__Deinococci|o__Deinococcales|f__Deinococcaceae 45.20297 | |
| 33 k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae 7.89639 | |
| 34 k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae 7.4516 | |
| 35 k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales|f__Propionibacteriaceae 6.71696 | |
| 36 k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae 6.43313 | |
| 37 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae 5.88648 | |
| 38 k__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria|o__Campylobacterales|f__Helicobacteraceae 4.03024 | |
| 39 k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Neisseriales|f__Neisseriaceae 3.73739 | |
| 40 k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales|f__Actinomycetaceae 3.66166 | |
| 41 k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales|f__Clostridiaceae 1.81937 | |
| 42 k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Enterococcaceae 1.71002 | |
| 43 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacteriales|f__Enterobacteriaceae 1.6961 | |
| 44 k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Listeriaceae 1.58307 | |
| 45 k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales|f__Methanobacteriaceae 0.79427 | |
| 46 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Pseudomonadaceae 0.70297 | |
| 47 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales|f__Rhodobacteraceae 0.52051 | |
| 48 k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Bacillaceae 0.15687 | |
| 49 k__Bacteria|p__Deinococcus_Thermus|c__Deinococci|o__Deinococcales|f__Deinococcaceae|g__Deinococcus 45.20297 | |
| 50 k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides 7.89639 | |
| 51 k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus 7.4516 | |
| 52 k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales|f__Propionibacteriaceae|g__Propionibacterium 6.71696 | |
| 53 k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus 6.43313 | |
| 54 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Acinetobacter 5.88648 | |
| 55 k__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria|o__Campylobacterales|f__Helicobacteraceae|g__Helicobacter 4.03024 | |
| 56 k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Neisseriales|f__Neisseriaceae|g__Neisseria 3.73739 | |
| 57 k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales|f__Actinomycetaceae|g__Actinomyces 3.66166 | |
| 58 k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales|f__Clostridiaceae|g__Clostridium 1.81937 | |
| 59 k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Enterococcaceae|g__Enterococcus 1.71002 | |
| 60 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacteriales|f__Enterobacteriaceae|g__Escherichia 1.6961 | |
| 61 k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Listeriaceae|g__Listeria 1.58307 | |
| 62 k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales|f__Methanobacteriaceae|g__Methanobrevibacter 0.79427 | |
| 63 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Pseudomonadaceae|g__Pseudomonas 0.70297 | |
| 64 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales|f__Rhodobacteraceae|g__Rhodobacter 0.52051 | |
| 65 k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Bacillaceae|g__Bacillus 0.15687 | |
| 66 k__Bacteria|p__Deinococcus_Thermus|c__Deinococci|o__Deinococcales|f__Deinococcaceae|g__Deinococcus|s__Deinococcus_radiodurans 45.20297 | |
| 67 k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides_vulgatus 7.89639 | |
| 68 k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales|f__Propionibacteriaceae|g__Propionibacterium|s__Propionibacterium_acnes 6.71696 | |
| 69 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Acinetobacter|s__Acinetobacter_baumannii 5.88648 | |
| 70 k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus|s__Staphylococcus_epidermidis 4.54517 | |
| 71 k__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria|o__Campylobacterales|f__Helicobacteraceae|g__Helicobacter|s__Helicobacter_pylori 4.03024 | |
| 72 k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus|s__Streptococcus_mitis_oralis_pneumoniae 4.02995 | |
| 73 k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Neisseriales|f__Neisseriaceae|g__Neisseria|s__Neisseria_meningitidis 3.73739 | |
| 74 k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales|f__Actinomycetaceae|g__Actinomyces|s__Actinomyces_odontolyticus 3.66166 | |
| 75 k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus|s__Staphylococcus_aureus 2.90642 | |
| 76 k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus|s__Streptococcus_mutans 2.35195 | |
| 77 k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales|f__Clostridiaceae|g__Clostridium|s__Clostridium_beijerinckii 1.81937 | |
| 78 k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Enterococcaceae|g__Enterococcus|s__Enterococcus_faecalis 1.71002 | |
| 79 k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Listeriaceae|g__Listeria|s__Listeria_monocytogenes 1.58307 | |
| 80 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacteriales|f__Enterobacteriaceae|g__Escherichia|s__Escherichia_coli 0.89751 | |
| 81 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacteriales|f__Enterobacteriaceae|g__Escherichia|s__Escherichia_unclassified 0.79859 | |
| 82 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Pseudomonadaceae|g__Pseudomonas|s__Pseudomonas_unclassified 0.55542 | |
| 83 k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales|f__Methanobacteriaceae|g__Methanobrevibacter|s__Methanobrevibacter_smithii 0.55066 | |
| 84 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales|f__Rhodobacteraceae|g__Rhodobacter|s__Rhodobacter_sphaeroides 0.52051 | |
| 85 k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales|f__Methanobacteriaceae|g__Methanobrevibacter|s__Methanobrevibacter_unclassified 0.24361 | |
| 86 k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Bacillaceae|g__Bacillus|s__Bacillus_cereus_thuringiensis 0.15687 | |
| 87 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Pseudomonadaceae|g__Pseudomonas|s__Pseudomonas_aeruginosa 0.14755 | |
| 88 k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus|s__Streptococcus_agalactiae 0.05124 | |
| 89 k__Bacteria|p__Deinococcus_Thermus|c__Deinococci|o__Deinococcales|f__Deinococcaceae|g__Deinococcus|s__Deinococcus_radiodurans|t__GCF_000008565 45.20297 | |
| 90 k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides_vulgatus|t__GCF_000012825 7.89639 | |
| 91 k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales|f__Propionibacteriaceae|g__Propionibacterium|s__Propionibacterium_acnes|t__Propionibacterium_acnes_unclassified 6.71696 | |
| 92 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Acinetobacter|s__Acinetobacter_baumannii|t__Acinetobacter_baumannii_unclassified 5.88648 | |
| 93 k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus|s__Staphylococcus_epidermidis|t__Staphylococcus_epidermidis_unclassified 4.54517 | |
| 94 k__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria|o__Campylobacterales|f__Helicobacteraceae|g__Helicobacter|s__Helicobacter_pylori|t__Helicobacter_pylori_unclassified 4.03024 | |
| 95 k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus|s__Streptococcus_mitis_oralis_pneumoniae|t__Streptococcus_mitis_oralis_pneumoniae_unclassified 4.02995 | |
| 96 k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Neisseriales|f__Neisseriaceae|g__Neisseria|s__Neisseria_meningitidis|t__Neisseria_meningitidis_unclassified 3.73739 | |
| 97 k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales|f__Actinomycetaceae|g__Actinomyces|s__Actinomyces_odontolyticus|t__Actinomyces_odontolyticus_unclassified 3.66166 | |
| 98 k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus|s__Staphylococcus_aureus|t__Staphylococcus_aureus_unclassified 2.90642 | |
| 99 k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus|s__Streptococcus_mutans|t__Streptococcus_mutans_unclassified 2.35195 | |
| 100 k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales|f__Clostridiaceae|g__Clostridium|s__Clostridium_beijerinckii|t__Clostridium_beijerinckii_unclassified 1.81937 | |
| 101 k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Enterococcaceae|g__Enterococcus|s__Enterococcus_faecalis|t__Enterococcus_faecalis_unclassified 1.71002 | |
| 102 k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Listeriaceae|g__Listeria|s__Listeria_monocytogenes|t__Listeria_monocytogenes_unclassified 1.58307 | |
| 103 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacteriales|f__Enterobacteriaceae|g__Escherichia|s__Escherichia_coli|t__Escherichia_coli_unclassified 0.89751 | |
| 104 k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales|f__Methanobacteriaceae|g__Methanobrevibacter|s__Methanobrevibacter_smithii|t__Methanobrevibacter_smithii_unclassified 0.55066 | |
| 105 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales|f__Rhodobacteraceae|g__Rhodobacter|s__Rhodobacter_sphaeroides|t__Rhodobacter_sphaeroides_unclassified 0.52051 | |
| 106 k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Bacillaceae|g__Bacillus|s__Bacillus_cereus_thuringiensis|t__Bacillus_cereus_thuringiensis_unclassified 0.15687 | |
| 107 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Pseudomonadaceae|g__Pseudomonas|s__Pseudomonas_aeruginosa|t__Pseudomonas_aeruginosa_unclassified 0.14755 | |
| 108 k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus|s__Streptococcus_agalactiae|t__Streptococcus_agalactiae_unclassified 0.05124 |