Mercurial > repos > bebatut > humann2
diff README.rst @ 1:bcd414bb721b draft default tip
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 79571d981d7d56657699be8aa24a40a36a8d0ab5-dirty
| author | bebatut |
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| date | Thu, 02 Jun 2016 04:23:09 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README.rst Thu Jun 02 04:23:09 2016 -0400 @@ -0,0 +1,14 @@ +Galaxy wrappers for HUMAnN2 +=========================== + +Galaxy should be able to automatically install the dependencies, i.e. the +HUMAnN2 binaries and its dependencies. + +After installation, you must tell Galaxy about the defaut database with +clade-specific marker genes used for taxonomic profiling (MetaPhlAn2), and where +to find it: + +* Put the ``metaphlan2_db.loc`` file in the ``tool-data/`` folder, after uncommenting last line +* Download whole MetaPhlan2 source code: https://bitbucket.org/biobakery/metaphlan2/get/2.5.0.zip +* Unzip it +* Move ``db_v20`` folder into ``dependency_dir/metaphlan2/2.5.0/bebatut/package_metaphlan2_2_5_0/...`` folder