Mercurial > repos > bebatut > package_humann2_0_6_1

annotate tool_dependencies.xml @ 0:655e87ac3364 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_6_1 commit 7aadbbdef6da644837f62ea428cb859eeff34f04-dirty
author bebatut
date Thu, 26 May 2016 10:17:07 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
655e87ac3364 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_6_1 commit 7aadbbdef6da644837f62ea428cb859eeff34f04-dirty
bebatut
parents:
diff changeset
1 <?xml version="1.0"?>
655e87ac3364 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_6_1 commit 7aadbbdef6da644837f62ea428cb859eeff34f04-dirty
bebatut
parents:
diff changeset
2 <tool_dependency>
655e87ac3364 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_6_1 commit 7aadbbdef6da644837f62ea428cb859eeff34f04-dirty
bebatut
parents:
diff changeset
3 <package name="humann2" version="0.6.1">
655e87ac3364 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_6_1 commit 7aadbbdef6da644837f62ea428cb859eeff34f04-dirty
bebatut
parents:
diff changeset
4 <install version="1.0">
655e87ac3364 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_6_1 commit 7aadbbdef6da644837f62ea428cb859eeff34f04-dirty
bebatut
parents:
diff changeset
5 <actions>
655e87ac3364 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_6_1 commit 7aadbbdef6da644837f62ea428cb859eeff34f04-dirty
bebatut
parents:
diff changeset
6 <action type="download_by_url" md5sum="fae7549ac333b973badf7e99805d50d1">https://bitbucket.org/biobakery/humann2/downloads/humann2_v0.6.1.tar.gz</action>
655e87ac3364 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_6_1 commit 7aadbbdef6da644837f62ea428cb859eeff34f04-dirty
bebatut
parents:
diff changeset
7 <action type="make_directory">$INSTALL_DIR/lib/python</action>
655e87ac3364 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_6_1 commit 7aadbbdef6da644837f62ea428cb859eeff34f04-dirty
bebatut
parents:
diff changeset
8 <action type="shell_command">
655e87ac3364 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_6_1 commit 7aadbbdef6da644837f62ea428cb859eeff34f04-dirty
bebatut
parents:
diff changeset
9 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
655e87ac3364 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_6_1 commit 7aadbbdef6da644837f62ea428cb859eeff34f04-dirty
bebatut
parents:
diff changeset
10 python setup.py install --bypass-dependencies-install --install-lib $INSTALL_DIR/lib/python --install-scripts=$INSTALL_DIR/</action>
655e87ac3364 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_6_1 commit 7aadbbdef6da644837f62ea428cb859eeff34f04-dirty
bebatut
parents:
diff changeset
11 <action type="make_directory">$INSTALL_DIR/databases</action>
655e87ac3364 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_6_1 commit 7aadbbdef6da644837f62ea428cb859eeff34f04-dirty
bebatut
parents:
diff changeset
12 <action type="set_environment">
655e87ac3364 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_6_1 commit 7aadbbdef6da644837f62ea428cb859eeff34f04-dirty
bebatut
parents:
diff changeset
13 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
655e87ac3364 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_6_1 commit 7aadbbdef6da644837f62ea428cb859eeff34f04-dirty
bebatut
parents:
diff changeset
14 <environment_variable name="HUMANN2_DIR" action="set_to">$INSTALL_DIR/</environment_variable>
655e87ac3364 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_6_1 commit 7aadbbdef6da644837f62ea428cb859eeff34f04-dirty
bebatut
parents:
diff changeset
15 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/</environment_variable>
655e87ac3364 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_6_1 commit 7aadbbdef6da644837f62ea428cb859eeff34f04-dirty
bebatut
parents:
diff changeset
16 </action>
655e87ac3364 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_6_1 commit 7aadbbdef6da644837f62ea428cb859eeff34f04-dirty
bebatut
parents:
diff changeset
17 </actions>
655e87ac3364 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_6_1 commit 7aadbbdef6da644837f62ea428cb859eeff34f04-dirty
bebatut
parents:
diff changeset
18 </install>
655e87ac3364 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_6_1 commit 7aadbbdef6da644837f62ea428cb859eeff34f04-dirty
bebatut
parents:
diff changeset
19 <readme></readme>
655e87ac3364 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_6_1 commit 7aadbbdef6da644837f62ea428cb859eeff34f04-dirty
bebatut
parents:
diff changeset
20 </package>
655e87ac3364 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_6_1 commit 7aadbbdef6da644837f62ea428cb859eeff34f04-dirty
bebatut
parents:
diff changeset
21 </tool_dependency>