Mercurial > repos > bebatut > package_metaphlan2_2_2_0

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_metaphlan2_2_2_0 commit 7aadbbdef6da644837f62ea428cb859eeff34f04-dirty
author bebatut
date Thu, 26 May 2016 10:20:04 -0400
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e9ab4fcb8278 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_metaphlan2_2_2_0 commit 7aadbbdef6da644837f62ea428cb859eeff34f04-dirty
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1 <?xml version="1.0"?>
e9ab4fcb8278 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_metaphlan2_2_2_0 commit 7aadbbdef6da644837f62ea428cb859eeff34f04-dirty
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2 <tool_dependency>
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3 <package name="python" version="2.7.10">
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4 <repository changeset_revision="0339c4a9b87b" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
e9ab4fcb8278 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_metaphlan2_2_2_0 commit 7aadbbdef6da644837f62ea428cb859eeff34f04-dirty
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5 </package>
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6 <package name="numpy" version="1.9">
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7 <repository changeset_revision="57b37f63cb84" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
e9ab4fcb8278 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_metaphlan2_2_2_0 commit 7aadbbdef6da644837f62ea428cb859eeff34f04-dirty
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8 </package>
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9 <package name="metaphlan2" version="2.2.0">
e9ab4fcb8278 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_metaphlan2_2_2_0 commit 7aadbbdef6da644837f62ea428cb859eeff34f04-dirty
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10 <install version="1.0">
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11 <actions>
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12 <action type="download_by_url">https://bitbucket.org/biobakery/metaphlan2/get/2.2.0.zip</action>
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13 <action type="move_file">
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14 <source>metaphlan2.py</source>
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15 <destination>$INSTALL_DIR/bin/</destination>
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16 </action>
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17 <action type="move_directory_files">
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18 <source_directory>utils/</source_directory>
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19 <destination_directory>$INSTALL_DIR/bin/</destination_directory>
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20 </action>
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21 <action type="setup_python_environment">
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22 <repository changeset_revision="0339c4a9b87b" name="package_python_2_7_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
e9ab4fcb8278 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_metaphlan2_2_2_0 commit 7aadbbdef6da644837f62ea428cb859eeff34f04-dirty
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23 <package name="python" version="2.7.10" />
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24 </repository>
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25 <repository changeset_revision="57b37f63cb84" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
e9ab4fcb8278 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_metaphlan2_2_2_0 commit 7aadbbdef6da644837f62ea428cb859eeff34f04-dirty
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26 <package name="numpy" version="1.9" />
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27 </repository>
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28 </action>
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29 <action type="set_environment">
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30 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
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31 <environment_variable action="set_to" name="METAPHLAN2_DIR">$INSTALL_DIR/</environment_variable>
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32 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin/</environment_variable>
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33 </action>
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34 </actions>
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35 </install>
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36 <readme />
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37 </package>
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38 </tool_dependency>