Mercurial > repos > bebatut > package_metaphlan2_2_2_0

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_metaphlan2_2_2_0 commit 7aadbbdef6da644837f62ea428cb859eeff34f04-dirty
author bebatut
date Thu, 26 May 2016 10:20:04 -0400
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<?xml version="1.0"?>
<tool_dependency>
    <package name="python" version="2.7.10">
        <repository changeset_revision="0339c4a9b87b" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="numpy" version="1.9">
        <repository changeset_revision="57b37f63cb84" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="metaphlan2" version="2.2.0">
        <install version="1.0">
            <actions>
                <action type="download_by_url">https://bitbucket.org/biobakery/metaphlan2/get/2.2.0.zip</action>
                <action type="move_file">
                    <source>metaphlan2.py</source>
                    <destination>$INSTALL_DIR/bin/</destination>
                </action>
                <action type="move_directory_files">
                    <source_directory>utils/</source_directory>
                    <destination_directory>$INSTALL_DIR/bin/</destination_directory>
                </action>
                <action type="setup_python_environment">
                    <repository changeset_revision="0339c4a9b87b" name="package_python_2_7_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                       <package name="python" version="2.7.10" />
                    </repository>
                    <repository changeset_revision="57b37f63cb84" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="numpy" version="1.9" />
                    </repository>
                </action>
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
                    <environment_variable action="set_to" name="METAPHLAN2_DIR">$INSTALL_DIR/</environment_variable>
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin/</environment_variable>
                </action>
            </actions>
        </install>
        <readme />
    </package>
</tool_dependency>