Mercurial > repos > bebatut > package_metaphlan2_2_5_0

changeset 0:43a80f92815f draft default tip

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_metaphlan2_2_5_0 commit 450bf3326f301c344103272b0d761e8625ce0c44-dirty
author bebatut
date Wed, 01 Jun 2016 10:42:49 -0400
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 38 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed Jun 01 10:42:49 2016 -0400
@@ -0,0 +1,38 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="python" version="2.7.10">
+        <repository changeset_revision="0339c4a9b87b" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="numpy" version="1.9">
+        <repository changeset_revision="57b37f63cb84" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="metaphlan2" version="2.5.0">
+        <install version="1.0">
+            <actions>
+                <action md5="1a1d5456f2a8b0754e7d1718e6e520df" type="download_by_url">https://bitbucket.org/biobakery/metaphlan2/get/2.5.0.tar.gz</action>
+                <action type="move_file">
+                    <source>metaphlan2.py</source>
+                    <destination>$INSTALL_DIR/</destination>
+                </action>
+                <action type="move_directory_files">
+                    <source_directory>utils/</source_directory>
+                    <destination_directory>$INSTALL_DIR/</destination_directory>
+                </action>
+                <action type="setup_python_environment">
+                    <repository changeset_revision="0339c4a9b87b" name="package_python_2_7_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                       <package name="python" version="2.7.10" />
+                    </repository>
+                    <repository changeset_revision="57b37f63cb84" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                        <package name="numpy" version="1.9" />
+                    </repository>
+                </action>
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
+                    <environment_variable action="set_to" name="METAPHLAN2_DIR">$INSTALL_DIR/</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme />
+    </package>
+</tool_dependency>