Mercurial > repos > bgruening > agat
diff macros.xml @ 3:a6318f87f2cd draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit ac954126686882dd6a64cea30070955344901a00
author | bgruening |
---|---|
date | Thu, 15 Feb 2024 15:47:19 +0000 |
parents | e009d8260be2 |
children | abba05ead5d7 |
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--- a/macros.xml Thu Sep 07 05:29:24 2023 +0000 +++ b/macros.xml Thu Feb 15 15:47:19 2024 +0000 @@ -1,6 +1,6 @@ <macros> <token name="@TOOL_VERSION@">1.2.0</token> - <token name="@VERSION_SUFFIX@">0</token> + <token name="@VERSION_SUFFIX@">1</token> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">agat</requirement> @@ -75,7 +75,7 @@ <token name="@input_reference@"><![CDATA[ #if $tool.reference_genome.source == 'history': #set $ref_genome = 'reference.fasta' - ln -s -f '${tool.reference_genome.history_item}' $ref_genome && + ln -s -f '${tool.reference_genome.history_item}' '$ref_genome' && #else: #set $ref_genome = $tool.reference_genome.index.fields.path #end if @@ -83,9 +83,7 @@ <token name="@input_annotation_double@"><![CDATA[ #set $input1 = 'annotation1.' + str($tool.input_annotation1.ext) #set $input2 = 'annotation2.' + str($tool.input_annotation2.ext) - ln -s '${tool.input_annotation1}' $input1 && - ln -s '${tool.input_annotation2}' $input2 && + ln -s '${tool.input_annotation1}' '$input1' && + ln -s '${tool.input_annotation2}' '$input2' && ]]></token> - - </macros>