Mercurial > repos > bgruening > agat
diff test-data/test01_stats.txt @ 2:e009d8260be2 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 8eb20f601bc1d2a50c8877b7d0ade057e8f86eae
| author | bgruening |
|---|---|
| date | Thu, 07 Sep 2023 05:29:24 +0000 |
| parents | f7c0a0030254 |
| children |
line wrap: on
line diff
--- a/test-data/test01_stats.txt Tue May 23 18:05:26 2023 +0000 +++ b/test-data/test01_stats.txt Thu Sep 07 05:29:24 2023 +0000 @@ -1,7 +1,6 @@ -------------------------------------------------------------------------------- -Compute transcript with isoforms if any - +---------------------------------- transcript ---------------------------------- Number of gene 379 Number of transcript 379 Number of cds 376 @@ -14,67 +13,25 @@ mean cdss per transcript 1.0 mean exons per transcript 1.0 mean exons per cds 1.0 -Total gene length 342644 -Total transcript length 342644 -Total cds length 342338 -Total exon length 342644 -mean gene length 904 -mean transcript length 904 -mean cds length 910 -mean exon length 904 -mean cds piece length 910 +Total gene length (bp) 342644 +Total transcript length (bp) 342644 +Total cds length (bp) 342338 +Total exon length (bp) 342644 +mean gene length (bp) 904 +mean transcript length (bp) 904 +mean cds length (bp) 910 +mean exon length (bp) 904 +mean cds piece length (bp) 910 % of genome covered by gene 33.1 % of genome covered by transcript 33.1 % of genome covered by cds 33.1 % of genome covered by exon 33.1 -Longest gene 9499 -Longest transcript 9499 -Longest cds 9499 -Longest exon 9499 -Longest cds piece 9499 -Shortest gene 54 -Shortest transcript 54 -Shortest cds 54 -Shortest exon 54 -Shortest cds piece 54 - -Re-compute transcript without isoforms asked. We remove shortest isoforms if any +Longest gene (bp) 9499 +Longest transcript (bp) 9499 +Longest cds (bp) 9499 +Longest exon (bp) 9499 +Longest cds piece (bp) 9499 +Shortest gene (bp) 54 +Shortest transcript (bp) 54 +Shortest cds piece (bp) 54 -Number of gene 379 -Number of transcript 379 -Number of cds 376 -Number of exon 379 -Number of exon in cds 376 -Number gene overlapping 62 -Number of single exon gene 379 -Number of single exon transcript 379 -mean transcripts per gene 1.0 -mean cdss per transcript 1.0 -mean exons per transcript 1.0 -mean exons per cds 1.0 -Total gene length 342644 -Total transcript length 342644 -Total cds length 342338 -Total exon length 342644 -mean gene length 904 -mean transcript length 904 -mean cds length 910 -mean exon length 904 -mean cds piece length 910 -% of genome covered by gene 33.1 -% of genome covered by transcript 33.1 -% of genome covered by cds 33.1 -% of genome covered by exon 33.1 -Longest gene 9499 -Longest transcript 9499 -Longest cds 9499 -Longest exon 9499 -Longest cds piece 9499 -Shortest gene 54 -Shortest transcript 54 -Shortest cds 54 -Shortest exon 54 -Shortest cds piece 54 - --------------------------------------------------------------------------------- -