Mercurial > repos > bgruening > agat
view test-data/test03.txt @ 5:e7449b2c14bf draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 28a6a1644ff8ffd8c3a47ccaaad0cb2da2aa87e3
| author | bgruening |
|---|---|
| date | Wed, 07 Aug 2024 20:54:27 +0000 |
| parents | a6318f87f2cd |
| children |
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usage: /usr/local/bin/agat_sp_compare_two_annotations.pl --gff1 annotation1.gtf --gff2 annotation2.gtf --output ./temp_output Results of number of genes from file1 that overlap genes from file2: ---------------------------------------------------------------------------------------------- | gene@transcript@cds | ---------------------------------------------------------------------------------------------- | annotation1.gtf | annotation2.gtf | Number of cases | ---------------------------------------------------------------------------------------------- | 1 | 0 | 366 | | 1 | 1 | 4 | | 2 | 2 | 3 | ---------------------------------------------------------------------------------------------- Number gene in annotation1: 376 Number gene in annotation2: 10 ---------------------------------------------------------------------------------------------- | gene@transcript@exon | ---------------------------------------------------------------------------------------------- | annotation1.gtf | annotation2.gtf | Number of cases | ---------------------------------------------------------------------------------------------- | 1 | 0 | 3 | ---------------------------------------------------------------------------------------------- Number gene in annotation1: 3 Number gene in annotation2: 0