Mercurial > repos > bgruening > alevin

diff umiout.sh @ 2:e53f19161c59 draft

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit c17bc974bf9bbaa1fc1e47ea72162fd244f0e612"
author bgruening
date Tue, 15 Oct 2019 12:02:30 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/umiout.sh	Tue Oct 15 12:02:30 2019 -0400
@@ -0,0 +1,11 @@
+#!/usr/bin/bash
+
+mkdir fixed;
+for file in ./umiout/*;
+do prefix="${file%.dot.gz}";
+prefix=${prefix/.\/umiout\//};
+gunzip $file;
+sed "s/umiout\/$prefix.dot.gz/$prefix/" umiout/$prefix.dot > fixed/$prefix.dot;
+dot -Tpdf fixed/$prefix.dot -o fixed/$prefix.pdf;
+done
+ls fixed