Mercurial > repos > bgruening > alevin
view umiout.sh @ 4:917f8e439160 draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 5dfee8ad03865f59c3e1ac9dd5865fd40e4616ef"
author | bgruening |
---|---|
date | Wed, 06 Nov 2019 13:54:21 -0500 |
parents | e53f19161c59 |
children |
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#!/usr/bin/bash mkdir fixed; for file in ./umiout/*; do prefix="${file%.dot.gz}"; prefix=${prefix/.\/umiout\//}; gunzip $file; sed "s/umiout\/$prefix.dot.gz/$prefix/" umiout/$prefix.dot > fixed/$prefix.dot; dot -Tpdf fixed/$prefix.dot -o fixed/$prefix.pdf; done ls fixed