view umiout.sh @ 9:ecb9ea6269ee draft

"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit fe9dd99a14770b6c5f26e24893599acb577e304f"
author bgruening
date Wed, 24 Mar 2021 20:15:12 +0000
parents e53f19161c59
children
line wrap: on
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#!/usr/bin/bash

mkdir fixed;
for file in ./umiout/*;
do prefix="${file%.dot.gz}";
prefix=${prefix/.\/umiout\//};
gunzip $file;
sed "s/umiout\/$prefix.dot.gz/$prefix/" umiout/$prefix.dot > fixed/$prefix.dot;
dot -Tpdf fixed/$prefix.dot -o fixed/$prefix.pdf;
done
ls fixed