view umiout.sh @ 12:f2000bc73102 draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 363aead8810baedaff299537616cebdab36a8664

#!/usr/bin/bash

mkdir fixed;
for file in ./umiout/*;
do prefix="${file%.dot.gz}";
prefix=${prefix/.\/umiout\//};
gunzip $file;
sed "s/umiout\/$prefix.dot.gz/$prefix/" umiout/$prefix.dot > fixed/$prefix.dot;
dot -Tpdf fixed/$prefix.dot -o fixed/$prefix.pdf;
done
ls fixed