Mercurial > repos > bgruening > antismash
comparison test-data/ARBH01000003.1.cluster001 @ 1:593bb8f5488b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit 654a4f3b3a1602cec2510d51fb953fd456427e08
author | bgruening |
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date | Wed, 07 Feb 2018 06:22:58 -0500 |
parents | |
children | 5784e268efca |
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0:5db064bbb3be | 1:593bb8f5488b |
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1 LOCUS ARBH01000003 3500 bp DNA linear BCT 22-APR-2013 | |
2 DEFINITION Amycolatopsis balhimycina FH 1894 strain DSM 44591 | |
3 A3CEDRAFT_scaffold1.1_C3, whole genome shotgun sequence. | |
4 ACCESSION ARBH01000003 | |
5 VERSION ARBH01000003.1 | |
6 KEYWORDS . | |
7 SOURCE Amycolatopsis balhimycina FH 1894 | |
8 ORGANISM Amycolatopsis balhimycina FH 1894 | |
9 Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; | |
10 Amycolatopsis. | |
11 FEATURES Location/Qualifiers | |
12 source 1..3500 | |
13 /organism="Amycolatopsis balhimycina FH 1894" | |
14 /mol_type="genomic DNA" | |
15 /strain="DSM 44591" | |
16 /culture_collection="DSM:44591" | |
17 /db_xref="taxon:1089545" | |
18 cluster 1..3500 | |
19 /note="Cluster number: 1" | |
20 /note="Detection rule(s) for this cluster type: t1pks: | |
21 ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS & | |
22 PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or | |
23 (tra_KS & PKS_AT));" | |
24 /note="Monomers prediction: (mal)" | |
25 /note="Structure image: structures/genecluster1.png" | |
26 /cutoff=20000 | |
27 /extension=20000 | |
28 /product="t1pks" | |
29 /contig_edge="True" | |
30 CDS 3..3500 | |
31 /aSProdPred="mal" | |
32 /note="smCOG: | |
33 SMCOG1001:short-chain_dehydrogenase/reductase_SDR (Score: | |
34 64.2; E-value: 2.2e-19);" | |
35 /locus_tag="ctg1_1" | |
36 /translation="GGVLALPAELDRRGGDRLAAVLSGATGEDQLAIRAAGVFGRRVVR | |
37 APAGDRAPARTWTPRGTTLITGGTGTLAPHLARWLAEQGAEHIVLTSRTGAEAPKARQL | |
38 LAELGETVEAVACDVTDKAALAALLARLRAEGRTVRNVVHTAAVIELHTLAETDLAAFS | |
39 RTVHAKVVGARNLDELLDTDELDAFVLYSSTAGLWGTGAHAAYVAGNAYLHALAAHRRA | |
40 RGLRATALSWGIWADDRELGRVDPEQIVRSGLVFMAPELALEGLRRALDDDETALAVAD | |
41 LDWERYYPVYTAVRPTLLFDELPEVRRLTEAAAATAATGAGGEFAARLRTLPEAERAHL | |
42 LLELVRAEAAAVLGHASADALPEDRAFRDVGFDSVTAVDLRNRISAGTGLTLPATMVFD | |
43 HPTPRRLAGFLAATITGSGAVEQAPAVAGVDTGEPVAIIGMACRYPGGANTPERLWDLV | |
44 VGGVDAISGFPADRNWPTDALYDPDPDAGGKTYSVQGGFLHEAAEFDPGFFGISPREAL | |
45 SMDPQQRLLLETAWEAFERAGIDPHTLRGSGTGTFIGASYQDYTAAVSGAVDNADGHMI | |
46 TGSLGSILSGRLSYLFGLEGPAVTLDTACSSSLVAIHLAAQSLRSGESSLALAGGVSVM | |
47 ATPGAFVGFSRQRALATDGRCKAYSDRADGMTLGEGVGLVLLEKLSDAQRNGHRILAVV | |
48 RGSATNQDGASNGMTAPSGPSQQRVIRQALANARLSASEVDVIEGHGTGTALGDPIEAQ | |
49 ALLATYGQDRERPLLLGSVKSNIGHTQMASGVAGVIKVVQALRHGLVPKTLHVDEPSTH | |
50 VDWSTGSIELPSGSVPWPESGRPRRAGISSFGLSGTNVHTILEQAPEPAAEAGPEPEPG | |
51 LVPVPLSGRTEAALRAQAATVLDTLDDGVSPAVLGYSLASTRSAFEHRAVLLAEDHDEL | |
52 RRGLAALAGDQPDGGVVRGTVTRGRTAFLFAGQGSQRAGMGRELYERHPVFADALDAVL | |
53 GHFDLPRALRDVMWDDDSTALDETGYTQPALFAFEVALFRLLESWGVTPDYLAGHSIGE | |
54 IAAAHVAGVLSLADACALVAARGALMQALPSGGAMVSVRGSEADVAGHLGEDVAVAAVN | |
55 GPESVVLAGTEDAVLQAAGRLEAAGHKVRRLRVSHAFHSPLMDPVLAEFATVAQGLTYH | |
56 " | |
57 /sec_met="Type: t1pks" | |
58 /sec_met="Domains detected: PP-binding (E-value: 1.3e-15, | |
59 bitscore: 44.0, seeds: 164); PKS_AT (E-value: 8.7e-82, | |
60 bitscore: 260.9, seeds: 1682); mod_KS (E-value: 9.4e-224, | |
61 bitscore: 729.0, seeds: 217); adh_short (E-value: 7.1e-52, | |
62 bitscore: 162.1, seeds: 230)" | |
63 /sec_met="Kind: biosynthetic" | |
64 /sec_met="NRPS/PKS subtype: Type I Modular PKS" | |
65 /sec_met="NRPS/PKS Domain: PKS_KR (60-237). E-value: | |
66 1.4e-53. Score: 173.1; Predicted KR activity: active; | |
67 Predicted KR stereochemistry: A2;" | |
68 /sec_met="NRPS/PKS Domain: ACP (341-412). E-value: 7.8e-31. | |
69 Score: 97.8;" | |
70 /sec_met="NRPS/PKS Domain: PKS_KS (434-858). E-value: | |
71 3e-179. Score: 587.9;" | |
72 /sec_met="NRPS/PKS Domain: PKS_AT (958-1166). E-value: | |
73 4e-80. Score: 260.9; Substrate specificity predictions: mal | |
74 (PKS signature), mal (Minowa), mal (consensus);" | |
75 aSDomain 183..713 | |
76 /domain="PKS_KR" | |
77 /locus_tag="ctg1_1" | |
78 /detection="hmmscan" | |
79 /database="nrpspksdomains.hmm" | |
80 /evalue="1.40E-53" | |
81 /score="173.1" | |
82 /translation="GTTLITGGTGTLAPHLARWLAEQGAEHIVLTSRTGAEAPKARQLL | |
83 AELGETVEAVACDVTDKAALAALLARLRAEGRTVRNVVHTAAVIELHTLAETDLAAFSR | |
84 TVHAKVVGARNLDELLDTDELDAFVLYSSTAGLWGTGAHAAYVAGNAYLHALAAHRRAR | |
85 GLRATALSWGIWAD" | |
86 /label="ctg1_1_KR1" | |
87 /asDomain_id="nrpspksdomains_ctg1_1_KR1" | |
88 /specificity="KR activity: active" | |
89 /specificity="KR stereochemistry: A2" | |
90 CDS_motif 192..284 | |
91 /note="NRPS/PKS Motif: PKSI-KR_m1 (e-value: 3.8e-15, | |
92 bit-score: 48.4)" | |
93 /locus_tag="ctg1_1" | |
94 /motif="PKSI-KR_m1" | |
95 /database="abmotifs" | |
96 /evalue="3.80E-15" | |
97 /asDomain_id="nrpspksmotif_ctg1_1_0001" | |
98 /detection="hmmscan" | |
99 /score="48.4" | |
100 /aSTool="pksnrpsmotif" | |
101 /translation="LITGGTGTLAPHLARWLAEQGAEHIVLTSRT" | |
102 /label="PKSI-KR_m1" | |
103 CDS_motif 555..665 | |
104 /note="NRPS/PKS Motif: PKSI-KR_m4 (e-value: 1.6e-14, | |
105 bit-score: 46.4)" | |
106 /locus_tag="ctg1_1" | |
107 /motif="PKSI-KR_m4" | |
108 /database="abmotifs" | |
109 /evalue="1.60E-14" | |
110 /asDomain_id="nrpspksmotif_ctg1_1_0002" | |
111 /detection="hmmscan" | |
112 /score="46.4" | |
113 /aSTool="pksnrpsmotif" | |
114 /translation="LDAFVLYSSTAGLWGTGAHAAYVAGNAYLHALAAHRR" | |
115 /label="PKSI-KR_m4" | |
116 aSDomain 1026..1238 | |
117 /domain="ACP" | |
118 /locus_tag="ctg1_1" | |
119 /detection="hmmscan" | |
120 /database="nrpspksdomains.hmm" | |
121 /evalue="7.80E-31" | |
122 /score="97.8" | |
123 /translation="LELVRAEAAAVLGHASADALPEDRAFRDVGFDSVTAVDLRNRISA | |
124 GTGLTLPATMVFDHPTPRRLAGFLAA" | |
125 /asDomain_id="nrpspksdomains_ctg1_1_Xdom01" | |
126 aSDomain 1305..2576 | |
127 /domain="PKS_KS" | |
128 /locus_tag="ctg1_1" | |
129 /detection="hmmscan" | |
130 /database="nrpspksdomains.hmm" | |
131 /evalue="3.00E-179" | |
132 /score="587.9" | |
133 /translation="VAIIGMACRYPGGANTPERLWDLVVGGVDAISGFPADRNWPTDAL | |
134 YDPDPDAGGKTYSVQGGFLHEAAEFDPGFFGISPREALSMDPQQRLLLETAWEAFERAG | |
135 IDPHTLRGSGTGTFIGASYQDYTAAVSGAVDNADGHMITGSLGSILSGRLSYLFGLEGP | |
136 AVTLDTACSSSLVAIHLAAQSLRSGESSLALAGGVSVMATPGAFVGFSRQRALATDGRC | |
137 KAYSDRADGMTLGEGVGLVLLEKLSDAQRNGHRILAVVRGSATNQDGASNGMTAPSGPS | |
138 QQRVIRQALANARLSASEVDVIEGHGTGTALGDPIEAQALLATYGQDRERPLLLGSVKS | |
139 NIGHTQMASGVAGVIKVVQALRHGLVPKTLHVDEPSTHVDWSTGSIELPSGSVPWPESG | |
140 RPRRAGISSFGLSGTNVHTILEQAP" | |
141 /asDomain_id="nrpspksdomains_ctg1_1_Xdom02" | |
142 CDS_motif 1788..1835 | |
143 /note="NRPS/PKS Motif: PKSI-KS_m3 (e-value: 2e-06, | |
144 bit-score: 19.7)" | |
145 /locus_tag="ctg1_1" | |
146 /motif="PKSI-KS_m3" | |
147 /database="abmotifs" | |
148 /evalue="2.00E-06" | |
149 /asDomain_id="nrpspksmotif_ctg1_1_0003" | |
150 /detection="hmmscan" | |
151 /score="19.7" | |
152 /aSTool="pksnrpsmotif" | |
153 /translation="GPAVTLDTACSSSLVA" | |
154 /label="PKSI-KS_m3" | |
155 CDS_motif 2211..2255 | |
156 /note="NRPS/PKS Motif: PKSI-KS_m5 (e-value: 0.0019, | |
157 bit-score: 10.8)" | |
158 /locus_tag="ctg1_1" | |
159 /motif="PKSI-KS_m5" | |
160 /database="abmotifs" | |
161 /evalue="1.90E-03" | |
162 /asDomain_id="nrpspksmotif_ctg1_1_0004" | |
163 /detection="hmmscan" | |
164 /score="10.8" | |
165 /aSTool="pksnrpsmotif" | |
166 /translation="IEGHGTGTALGDPIE" | |
167 /label="PKSI-KS_m5" | |
168 CDS_motif 2310..2354 | |
169 /note="NRPS/PKS Motif: PKSI-KS_m6 (e-value: 0.0011, | |
170 bit-score: 11.5)" | |
171 /locus_tag="ctg1_1" | |
172 /motif="PKSI-KS_m6" | |
173 /database="abmotifs" | |
174 /evalue="1.10E-03" | |
175 /asDomain_id="nrpspksmotif_ctg1_1_0005" | |
176 /detection="hmmscan" | |
177 /score="11.5" | |
178 /aSTool="pksnrpsmotif" | |
179 /translation="GSVKSNIGHTQMASG" | |
180 /label="PKSI-KS_m6" | |
181 CDS_motif 2874..2927 | |
182 /note="NRPS/PKS Motif: PKSI-AT-mM_m1 (e-value: 2.3e-06, | |
183 bit-score: 19.8)" | |
184 /locus_tag="ctg1_1" | |
185 /motif="PKSI-AT-mM_m1" | |
186 /database="abmotifs" | |
187 /evalue="2.30E-06" | |
188 /asDomain_id="nrpspksmotif_ctg1_1_0006" | |
189 /detection="hmmscan" | |
190 /score="19.8" | |
191 /aSTool="pksnrpsmotif" | |
192 /translation="FLFAGQGSQRAGMGRELY" | |
193 /label="PKSI-AT-mM_m1" | |
194 aSDomain 2877..3500 | |
195 /domain="PKS_AT" | |
196 /locus_tag="ctg1_1" | |
197 /detection="hmmscan" | |
198 /database="nrpspksdomains.hmm" | |
199 /evalue="4.00E-80" | |
200 /score="260.9" | |
201 /translation="LFAGQGSQRAGMGRELYERHPVFADALDAVLGHFDLPRALRDVMW | |
202 DDDSTALDETGYTQPALFAFEVALFRLLESWGVTPDYLAGHSIGEIAAAHVAGVLSLAD | |
203 ACALVAARGALMQALPSGGAMVSVRGSEADVAGHLGEDVAVAAVNGPESVVLAGTEDAV | |
204 LQAAGRLEAAGHKVRRLRVSHAFHSPLMDPVLAEFATVAQGLTYH" | |
205 /label="ctg1_1_AT1" | |
206 /asDomain_id="nrpspksdomains_ctg1_1_AT1" | |
207 /specificity="PKS signature: mal" | |
208 /specificity="Minowa: mal" | |
209 /specificity="consensus: mal" | |
210 CDS_motif 3033..3095 | |
211 /note="NRPS/PKS Motif: PKSI-AT-mM_m2 (e-value: 0.0032, | |
212 bit-score: 10.9)" | |
213 /locus_tag="ctg1_1" | |
214 /motif="PKSI-AT-mM_m2" | |
215 /database="abmotifs" | |
216 /evalue="3.20E-03" | |
217 /asDomain_id="nrpspksmotif_ctg1_1_0007" | |
218 /detection="hmmscan" | |
219 /score="10.9" | |
220 /aSTool="pksnrpsmotif" | |
221 /translation="DETGYTQPALFAFEVALFRLL" | |
222 /label="PKSI-AT-mM_m2" | |
223 CDS_motif 3105..3227 | |
224 /note="NRPS/PKS Motif: PKSI-AT-M_m3 (e-value: 2.3e-22, | |
225 bit-score: 71.3)" | |
226 /locus_tag="ctg1_1" | |
227 /motif="PKSI-AT-M_m3" | |
228 /database="abmotifs" | |
229 /evalue="2.30E-22" | |
230 /asDomain_id="nrpspksmotif_ctg1_1_0008" | |
231 /detection="hmmscan" | |
232 /score="71.3" | |
233 /aSTool="pksnrpsmotif" | |
234 /translation="GVTPDYLAGHSIGEIAAAHVAGVLSLADACALVAARGALMQ" | |
235 /label="PKSI-AT-M_m3" | |
236 CDS_motif 3312..3350 | |
237 /note="NRPS/PKS Motif: PKSI-AT-M_m5 (e-value: 0.00047, | |
238 bit-score: 13.4)" | |
239 /locus_tag="ctg1_1" | |
240 /motif="PKSI-AT-M_m5" | |
241 /database="abmotifs" | |
242 /evalue="4.70E-04" | |
243 /asDomain_id="nrpspksmotif_ctg1_1_0009" | |
244 /detection="hmmscan" | |
245 /score="13.4" | |
246 /aSTool="pksnrpsmotif" | |
247 /translation="AAVNGPESVVLAG" | |
248 /label="PKSI-AT-M_m5" | |
249 ORIGIN | |
250 1 ggggcggcgt gctcgccctg cccgccgagc tggaccgccg cggcggcgac cggctggcgg | |
251 61 ctgtgctgtc cggcgccacc ggcgaagacc agctggccat ccgcgccgcc ggcgtgttcg | |
252 121 gccgccgcgt ggtgcgggcc ccggccggcg accgcgcgcc ggcgcggacc tggaccccgc | |
253 181 gcggcaccac gctgatcacc ggcggcaccg gcaccctggc cccgcacctg gcccgctggc | |
254 241 tggccgagca gggcgccgag cacatcgtgc tgaccagccg caccggcgcc gaggccccga | |
255 301 aggcccggca gctgctggcg gagctgggcg agaccgtcga ggcggtggcc tgcgacgtca | |
256 361 ccgacaaggc ggcgctggcc gccctgctgg cgcggttgcg ggccgagggc cggaccgtgc | |
257 421 ggaacgtggt gcacacggcc gccgtgatcg agctgcacac gctggccgag accgacctgg | |
258 481 ccgcgttctc ccggaccgtg cacgccaagg tggtgggcgc gcgcaacctg gacgagctgc | |
259 541 tcgacaccga cgagctcgat gcgttcgtgc tgtactcctc caccgccggc ctgtggggca | |
260 601 ccggcgcgca cgccgcctac gtggccggca acgcgtactt gcacgcgctg gcagcccacc | |
261 661 ggcgcgcccg ggggctgcgg gccaccgcgc tgtcgtgggg catctgggcc gacgaccgcg | |
262 721 aactcggccg ggtcgacccg gagcagatcg tgcgcagcgg cctggtgttc atggcgccgg | |
263 781 agctggcgct ggagggtctg cgccgggccc tggacgacga cgagaccgcg ctggccgtgg | |
264 841 ccgatctgga ctgggagcgg tactacccgg tctacaccgc cgtccggccg acgctgctgt | |
265 901 tcgacgagct gccggaggtg cggcggctca ccgaggccgc cgccgccacg gccgccaccg | |
266 961 gcgccggcgg cgagttcgcc gcccggctgc gcacgctgcc cgaggccgag cgcgcccacc | |
267 1021 tgctcctgga actggtccgg gccgaggccg cggccgtgct gggccacgcg tcggccgacg | |
268 1081 cgctgcccga ggaccgcgcc ttccgcgacg tcggcttcga ctcggtcacc gcggtcgacc | |
269 1141 tgcgcaaccg gatctccgcc ggcaccggcc tgaccctgcc cgccaccatg gtgttcgacc | |
270 1201 acccgacgcc gaggcggctg gccgggttcc tggccgccac gatcaccggc tcgggtgccg | |
271 1261 tcgagcaggc accggccgtg gccggcgtgg acaccggcga gcccgtcgcc atcatcggga | |
272 1321 tggcctgccg ctacccgggt ggcgcgaaca ccccggaacg gttgtgggac ctggtcgtgg | |
273 1381 gcggcgtgga cgccatctcc ggcttcccgg ccgaccgcaa ctggccgacc gacgcgctct | |
274 1441 acgacccgga cccggacgcc ggcggcaaga cctattcggt gcagggcggc ttcctgcacg | |
275 1501 aggcggccga gttcgacccg ggcttcttcg gcatctcgcc gcgggaggca ctgtccatgg | |
276 1561 atccgcagca gcgcctgctg ctggagacgg cgtgggaggc gttcgagcgg gccgggatcg | |
277 1621 acccgcacac gctgcggggc agcggcaccg gcaccttcat cggggccagc taccaggact | |
278 1681 acaccgcggc cgtgtccggc gcggtggaca acgccgacgg ccacatgatc accggctcgc | |
279 1741 tgggcagcat cctgtccggc cggctctcct acctgttcgg gctggagggc ccggcggtca | |
280 1801 ccctggacac cgcctgctcg tcgtcgctgg tcgccatcca cctggccgcg cagtcgctgc | |
281 1861 ggtcggggga gagcagcctg gcgctggccg gcggggtgag cgtgatggcg acgccggggg | |
282 1921 cgttcgtcgg cttctcgcgc cagcgcgcac tggccacgga cggccgttgc aaggcctact | |
283 1981 cggaccgggc cgacggcatg accctcggcg agggcgtcgg cctggtgctg ctggagaagc | |
284 2041 tgtccgacgc gcagcgcaac gggcaccgga tcctggcggt ggtccggggt tcggccacga | |
285 2101 accaggacgg cgcgtccaac ggcatgaccg cgcccagcgg cccgtcccag cagcgggtga | |
286 2161 tccggcaggc gctggccaac gcgcggctct cggcgtccga ggtggacgtg atcgagggcc | |
287 2221 acggcaccgg caccgcgctg ggcgacccga tcgaggccca ggccctgctg gccacctacg | |
288 2281 gccaggaccg ggaacggccg ctgctgctcg gctcggtgaa gtccaacatc ggccacaccc | |
289 2341 agatggcctc cggcgtggcc ggcgtgatca aggtggtgca ggcgctgcgg cacgggctgg | |
290 2401 tacccaagac gctgcacgtg gacgagccct ccacgcacgt cgactggagc accggctcga | |
291 2461 tcgagctgcc gtccggcagc gtgccgtggc cggagagcgg ccggccgcgc cgggccggta | |
292 2521 tctcgtcctt cgggctgagc ggcacgaacg tgcacaccat cctcgagcag gccccggaac | |
293 2581 cggccgccga agccggcccc gagccggagc ccggcctggt gccggtcccg ctgtccggcc | |
294 2641 ggacggaagc agcgctgcgc gctcaggccg ccaccgtgct ggacaccctg gacgacggcg | |
295 2701 tgtcgccggc cgtgctcggg tactcgctgg cctccacccg gtcggccttc gaacaccgtg | |
296 2761 cggtgctgct ggccgaggac cacgacgaac tgcggcgcgg cctggccgca ctggccggcg | |
297 2821 accagccgga cggcggcgtg gtgcggggca ccgtgacgcg gggccgcacg gcgttcctgt | |
298 2881 tcgccggcca gggcagccag cgggccggga tgggccgcga gctgtacgag cgccacccgg | |
299 2941 tgttcgccga cgcgctggac gcggtgctgg ggcacttcga cctgccccgt gcgctgcggg | |
300 3001 acgtgatgtg ggacgacgat tccacggccc tcgacgagac ggggtacacc cagccggcgt | |
301 3061 tgttcgcctt cgaggtggcg ttgttccggt tgctggagtc gtggggtgtg acgccggatt | |
302 3121 acctggccgg gcattcgatc ggtgagatcg ccgcggcgca cgtggccgga gtgttgtcgc | |
303 3181 tggccgatgc ctgtgcgttg gtcgctgcgc ggggtgcgct gatgcaggcg ctgccgtccg | |
304 3241 gcggggccat ggtttcggtg cgcggctccg aggccgacgt cgccgggcac ctcggcgagg | |
305 3301 acgtcgccgt cgcggcggtc aacgggcccg agtcggtggt gctggccggg accgaggacg | |
306 3361 cggtgctcca ggcggccggc cgcctggagg ccgccggcca caaggtccgc cgcctgcggg | |
307 3421 tcagccacgc cttccactcg cccttgatgg atcccgtgct ggccgagttc gcgacggtgg | |
308 3481 ctcagggcct gacctaccac | |
309 // |